120425 00PI_RevB 1R12045 00PI ITQ PIG Pre Installation Guide

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Xcalibur

Ion Trap Series

Preinstallation Requirements

Guide

1R12045-00PI Revision A April 2014

© 2014 Thermo Fisher Scientific Inc. All rights reserved. Xcalibur™, DSQ, DSQ II, TRACE DSQ, TRACE

GC, TRACE GC Ultra, TRACE 1300, TRACE 1310, FOCUS GC, PolarisQ, ISQ, and ITQ are trademarks

and/or product names of Thermo Fisher Scientific. Microsoft® is a registered trademark of Microsoft. Adobe® is

a registered trademark of Adobe Systems Incorporated in the United States and/or other countries. Septum

BTO® is a registered trademark of Chromatography Research Supplies, Inc. Swagelok® is a registered trademark

of Swagelok Company. ETP is an SGE product. All other trademarks are the property of Thermo Fisher

Scientific and its subsidiaries.

Ion Trap series refers to ITQ and PolarisQ instruments. DSQ series refers to all DSQ and DSQ II instruments.

Thermo Fisher Scientific Inc. provides this document to its customers with a product purchase to use in the

product operation. This document is copyright protected and any reproduction of the whole or any part of this

document is strictly prohibited, except with the written authorization of Thermo Fisher Scientific Inc.

The contents of this document are subject to change without notice. All technical information in this

document is for reference purposes only. System configurations and specifications in this document supersede

all previous information received by the purchaser.

Thermo Fisher Scientific Inc. makes no representations that this document is complete, accurate or error-

free and assumes no responsibility and will not be liable for any errors, omissions, damage or loss that might

result from any use of this document, even if the information in the document is followed properly.

This document is not part of any sales contract between Thermo Fisher Scientific Inc. and a purchaser. This

document shall in no way govern or modify any Terms and Conditions of Sale, which Terms and Conditions of

Sale shall govern all conflicting information between the two documents.

Release history: Revision A, April 2014.

For Research Use Only. Not for use in diagnostic procedures.

IMPORTANT PREINSTALLATION INFORMATION... PLEASE READ

Ion Trap Series Installation Request Form

Dear User:

After you review the ITQ Preinstallation Guide, you need to print and complete this form. Once items 1-13 are

completed, sign and date the form and mail it to your local Thermo Fisher Scientific sales/service office. The

address and fax number for all of our offices are listed on the following pages.

Print your name, company name, and company address clearly below:

Name ________________________________________________________

Company _____________________________________________________ Telephone____________________

Address ___________________________________________________________________________________

Address ___________________________________________________________________________________

City ______________________________________ State _____________ Country______________________

Signature _____________________________________________________ Date ________________________

Have any special acceptance specifications been agreed to in the contract? Yes  No 

If YES, attach full details of specifications.

Is there any additional equipment that needs to be interfaced to the system? Yes  No 

If YES, attach full details of additional equipment.

Note: We reserve the right to invoice against the engineer’s time if the installation requirements are not met on the

date of the installation.

1. All items in“Entrance Requirements” on page 2

are met.

2. All items in“Workbench & Space Requirements”

on page 3 are met.

3. All items in“Lighting Requirements ” on page 5

are met.

4. All items in“Power Requirements ” on page 5

are met.

5. All items in“Gas Equipment Requirements ” on

page 11 are met.

6. All items in“Solvent Requirements ” on page 14

are met.

7. All items in“Environmental Requirements ” on

page 15 are met.

8. I have read and understood the information

contained in“Telephone Requirements ” on

page 17 and “Receiving Instructions” on

page 17.

9. I have read and understood the information

contained in“What Happens Next?” on page 18.

10. All relevant safety regulations are met.

11. The principal operator is available during the

installation / certification period.

12. No more than three-calendar months have

elapsed since the GC/MS arrived.

13. I have read and agree to the End User License

Agreements for any software purchased with my

system.

Signature:______________________________

North America

United States

1400 North Point Pkwy #10

West Palm Beach, FL 33407

E-mail:

us.customer-support.analyze@thermofisher.com

Phone.........................[1] 800 532 4752

Fax .............................[1] 877 373 4006

Canada

2845 Argentia Road, Unit 4

Mississauga, Ontario, L5N 8G6

E-mail:

us.customer-support.analyze@thermofisher.com

Phone.........................[1] 800 530 8447

Fax .............................[1] (905) 890 9161

Europe

Austria

Wehlistrasse 27b

A-1200 Wien

E-mail: service.sid.austria@thermofisher.com

Phone.........................[43] (0) 1 333 50 34-0

Fax .............................[43] (0) 1 333 50 34-26

Belgium

Clintonpark “Keppekouter”

Ninovesteenweg 198

B-9320 ERMEBODEGEM - AALST

E-mail: service.sid.benelux@thermofisher.com

Phone.........................[32] (0) 2 482 3030

Fax .............................[32] (0) 2 482 3031

Denmark

Fruebjergvej 3

2100 København Ø

E-mail: service.sid.dk@thermofisher.com

Phone.........................[45] (70) 236267

Fax .............................[45] (70) 236263

Finland—see “Sweden, Norway, and Finland”

France

(Also representing French-speaking North Africa,

Algeria, Morocco, and Tunisia)

16 Avenue du Québec

Silic 765

Z.A. de Courtaboeuf

F-91963 Les Ulis Cédex

E-mail: service.sid.lesulis@thermofisher.com

Phone.........................[33] (0) 1 60 92 49 50

Fax .............................[33] (0) 1 60 92 48 99

Germany

Im Steingrund 4-6

D-63303 Dreieich

E-mail: service.dreieich@thermofisher.com

Phone.........................[49] (0) 6103 408 1050

Fax .............................[49] (0) 6103 408 1213

Italy

Strada Rivoltana

I-20090 Rodano (Milano)

E-mail: assistenza.tecnica.it@thermofisher.com

Phone.........................Numero Verde (800) 823 162

Fax .............................[39] (02) 95320 225

Netherlands

Takkebijsters 1

NL-4817 BL Breda

E-mail: service.sid.benelux@thermofisher.com

Phone.........................[31] (0) 76 579 55 55

Fax .............................[31] (0) 76 581 09 61

Norway—see “Sweden, Norway, and Finland”

Spain

C/Valportillo I, no22 1a Planta

Edificio Caoba

ES-28108 Alcobendas - Madrid

E-mail: service.sid.spain@thermofisher.com

Phone.........................[34] (914) 845 965

Fax .............................[34](914) 843 598

Offices for Thermo Scientific CMD Products

For up-to-date contact information, visit www.thermoscientific.com/.

Notes: The country code is enclosed in square brackets [ ]. The city code or area code is enclosed in parenthesis ( ). For countries other than the U.S., when you are

dialing from within the specified country, dial the 0 of the city code. For countries other than Italy, when you are dialing from outside the country, do not dial the 0 of

the city code.

Europe—continued

Sweden, Norway, and Finland

Pyramidbacken 3

S-141 75 Kungens Kurva (Stockholm)

Sweden

E-mail: service.sid.nordic@thermofisher.com

Phone.........................[46] (0) 8 556 468 20

Fax .............................[46] (0) 8 556 468 08

Switzerland

Neuhofstrasse 11

4153 Reinach

E-mail: service.sid.ch@thermofisher.com

Phone.........................[41] (617) 16 77 40

Fax .............................[41] (617) 16 77 20

United Kingdom

Stafford House

1 Boundary Park

Boundary Way

Hemel Hempstead

Hertfordshire HP2 7GE

E-mail: service.sid.hemel@thermofisher.com

Phone ........................[44] (0) 870 241 1034

Fax .............................[44] (0) 1442 233 667

Australasia and Asia

Australia

P.O. Box 9092

5 Caribbean Drive

Scoresby, VIC 3179

E-mail: analyze.au@thermofisher.com

Phone.........................[61] 39757 4300

Fax .............................[61] 9763 1169

Japan

C-2F

3-9 Moriya-cho, Kanagawa-ku

Yokohama 221-0022

E-mail: analyze.jp@thermofisher.com

Phone.........................[81] (45) 453 9100

Fax .............................[81] (45) 453 9110

P.R. China

7th Floor, 7F Tower West, Younghe Plaza

No. 28, Andingmen East Street

Beijing 100007

E-mail: analyze.cn@thermofisher.com

Phone (free lines).......800 810 5118

...................................400 650 5118

Fax .............................[86] 10 88370548

Offices for Thermo Scientific CMD Products—Continued

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide vii

C

Preface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .xiii

About Your System. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .xiii

Power Ratings. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . xv

Related Documentation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . xv

System Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . xv

Safety and Special Notices . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .xvi

Safety Symbols and Signal Words . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .xvi

Contacting Us . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .xviii

Chapter 1 Site Preparation. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1

Entrance Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2

Workbench & Space Requirements. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3

Lighting Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5

Power Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5

Gas Equipment Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11

Solvent Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14

Environmental Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15

ESD Precautions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16

Telephone Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17

Receiving Instructions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17

What Happens Next? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18

Appendix A End User License Agreements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .21

End-User License Agreement–Apache OpenOffice 4.0.1 and TraceFinder

3.2. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21

End-User License Agreement–Microsoft Office Professional Plus 2013 and

TraceFinder 3.2. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 28

Glossary . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .43

Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .47

Contents

Contents

viii Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Declaration

Manufacturer: Thermo Fisher Scientific

Thermo Fisher Scientific is the manufacturer of the instrument described in this manual and, as such, is responsible for

the instrument safety, reliability and performance only if:

•installation

• re-calibration

•changes and repairs

have been carried out by authorized personnel and if:

• the local installation complies with local law regulations

• the instrument is used according to the instructions provided and if its operation is only entrusted to qualified

trained personnel

Thermo Fisher Scientific is not liable for any damages derived from the non-compliance with the aforementioned

recommendations.

Regulatory Compliance

Thermo Fisher Scientific performs complete testing and evaluation of its products to ensure full compliance with

applicable domestic and international regulations. When the system is delivered to you, it meets all pertinent

electromagnetic compatibility (EMC) and safety standards as described in the next section or sections by product name.

Changes that you make to your system may void compliance with one or more of these EMC and safety standards.

Changes to your system include replacing a part or adding components, options, or peripherals not specifically

authorized and qualified by Thermo Fisher Scientific. To ensure continued compliance with EMC and safety standards,

replacement parts and additional components, options, and peripherals must be ordered from Thermo Fisher Scientific

or one of its authorized representatives. EMC Directive 89/336/EEC

EMC compliance has been evaluated by Professional Testing.

• Polaris Q, ITQ, and Ion Trap Series standards: EMC EN 61326-1:2006. Safety IEC 61010-1:2001,

IEC 61010-2-081:2001

• DSQ II standards: EMC EN 61326-1:1997 + A1:1998 + A2:2001. Safety EN 61010-1:2001

• Direct Probe Controller (DPC) standards: EMC EN 55011:1991 + EN 50082-1:1992. Safety EN 61010-1:1994

• ISQ standards: EMC EN 61326-1:2006. Safety IEC 61010-1:2001

Low Voltage Safety Compliance

This device complies with Low Voltage Directive 2006/95/EC and harmonized standard EN 61010-1:2001.

FCC Compliance Statement

Notice on Lifting and Handling of

Thermo Scientific Instruments

For your safety, and in compliance with international regulations, the physical handling of this Thermo Fisher Scientific

instrument requires a team effort to lift and/or move the instrument. This instrument is too heavy and/or bulky for one

person alone to handle safely.

Notice on the Proper Use of

Thermo Scientific Instruments

In compliance with international regulations: Use of this instrument in a manner not specified by Thermo Fisher

Scientific could impair any protection provided by the instrument.

Notice on the Susceptibility

to Electromagnetic Transmissions

Your instrument is designed to work in a controlled electromagnetic environment. Do not use radio frequency

transmitters, such as mobile phones, in close proximity to the instrument.

THIS DEVICE COMPLIES WITH PART 15 OF THE FCC RULES. OPERATION IS SUBJECT TO

THE FOLLOWING TWO CONDITIONS: (1) THIS DEVICE MAY NOT CAUSE HARMFUL

INTERFERENCE, AND (2) THIS DEVICE MUST ACCEPT ANY INTERFERENCE RECEIVED,

INCLUDING INTERFERENCE THAT MAY CAUSE UNDESIRED OPERATION.

CAUTION Read and understand the various precautionary notes, signs, and symbols

contained inside this manual pertaining to the safe use and operation of this product before

using the device.

For manufacturing location, see the label on the instrument.

WEEE Compliance

This product is required to comply with the European Union’s Waste Electrical & Electronic Equipment (WEEE)

Directive 2002/96/EC. It is marked with the following symbol:

Thermo Fisher Scientific has contracted with one or more recycling or disposal companies in each European Union

(EU) Member State, and these companies should dispose of or recycle this product. See www.thermoscientific.com/

rohsweee for further information on Thermo Fisher Scientific’s compliance with these Directives and the recyclers in

your country.

WEEE Konformität

Dieses Produkt muss die EU Waste Electrical & Electronic Equipment (WEEE) Richtlinie 2002/96/EC erfüllen.

Das Produkt ist durch folgendes Symbol gekennzeichnet:

Thermo Fisher Scientific hat Vereinbarungen mit Verwertungs-/Entsorgungsfirmen in allen EU-Mitgliedsstaaten

getroffen, damit dieses Produkt durch diese Firmen wiederverwertet oder entsorgt werden kann. Mehr Information

über die Einhaltung dieser Anweisungen durch Thermo Fisher Scientific, über die Verwerter, und weitere Hinweise,

die nützlich sind, um die Produkte zu identifizieren, die unter diese RoHS Anweisung fallen, finden sie unter

www.thermoscientific.com/rohsweee.

Conformité DEEE

Ce produit doit être conforme à la directive européenne (2002/96/EC) des Déchets d'Equipements Electriques et

Electroniques (DEEE). Il est marqué par le symbole suivant:

Thermo Fisher Scientific s'est associé avec une ou plusieurs compagnies de recyclage dans chaque état membre de

l’union européenne et ce produit devrait être collecté ou recyclé par celles-ci. Davantage d'informations sur la

conformité de Thermo Fisher Scientific à ces directives, les recycleurs dans votre pays et les informations sur les

produits Thermo Fisher Scientific qui peuvent aider la détection des substances sujettes à la directive RoHS sont

disponibles sur www.thermoscientific.com/rohsweee.

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide xiii

P

Preface

This guide contains preinstallation requirements that must be in compliance before your

instrument can be installed.

At the time you purchased your system, your sales representative should have left you this

preinstallation guide to help you prepare your laboratory for the arrival and installation of

your system.

Some information refers to the USA exclusively. Assurances and specifications might differ in

other locations. Specific details are available from your regional Thermo Scientific Technical

Support office. If you have questions, contact the Thermo Scientific Customer Service office

assigned to your area.

About Your System

Thermo Fisher Scientific systems provide the highest caliber gas chromatography/mass

spectrometry (GC/MS) instrumentation available on today’s market.

GC/MS represents a combination of two powerful analytical techniques: GC, which acts as a

separation technique and MS, which acts as a detection technique. Complex mixtures of

individual compounds can be injected into the GC, either manually or through the use of an

optional autosampler, and then separated for presentation to the MS. The MS will then

generate a mass spectrum of the GC eluent and its components, which can be used for

qualitative identification as well as accurate and precise quantification of the individual

compounds present in the sample.

Contents

•About Your System

•Power Ratings

•Related Documentation

•System Requirements

•Safety and Special Notices

•Contacting Us

Preface

About Your System

xiv Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

IMPORTANT Thermo Fisher Scientific systems are designed to optimize both the

separation and detection capabilities of GC/MS techniques and combine them in a

synergistic fashion to provide high performance analytical capabilities for both research

and routine applications. More information on the use of this system can be found in

related documentation sources and through the provided contact information.

WARNING Thermo Fisher Scientific systems operate safely and reliably under carefully

controlled environmental conditions. If the equipment is used in manner not specified by

the manufacturer, the protections provided by the equipment may be impaired. If you

maintain a system outside the specifications listed in this guide, failures of many types,

including personal injury or death, may occur. The repair of instrument failures caused by

operation in a manner not specified by the manufacturer is specifically excluded from the

Standard Warranty and service contract coverage.

Preface

Power Ratings

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide xv

Power Ratings

Mass Spectrometer (MS)

• 120 V ac +6/-10%, 50/60 Hz, 15 A max

• 230 V ac ±10%, 50/60 Hz, 10 A max

Gas Chromatograph (GC)

• 120 V ac +6%/-10%, 50/60 Hz, 16 A max

• 230 V ac ±10%, 50/60 Hz, 16 A max

Detailed instrument specifications are in the Product Specification or Product Brochure.

Related Documentation

In addition to this guide, Thermo Scientific provides the following documents for the Ion

Trap Series mass spectrometer. These documents are also available on a “Print-By-Request”

basis.

Ion Trap Series Preinstallation Requirements Guide PN 1R120425-00PI

Ion Trap Series User Guide PN 120425-USER

Ion Trap Series Hardware Manual PN 120425-00HW

Instrument Help is available from within the software.

To view product manuals

Open the desktop folder labeled Manuals.

To open Help

• From the Ion Trap Series window, choose Help > Ion Trap Series Help.

• If available for a specific window or dialog box, click Help or press the F1 key for

information about setting parameters.

For more information, visit www.thermo.com.

System Requirements

Your Ion Trap Series data system must meet the following minimum requirements.

Preface

Safety and Special Notices

xvi Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Safety and Special Notices

Make sure you follow the precautionary statements presented in this guide. The safety and

other special notices appear in boxes.

Safety and special notices include the following:

Safety Symbols and Signal Words

All safety symbols are followed by WARNING or CAUTION, which indicates the degree of risk

for personal injury and/or instrument damage. Cautions and warnings are following by a

descriptor. A WARNING is intended to prevent improper actions that could cause personal

injury. A CAUTION is intended to prevent improper actions that may cause personal injury

and/or instrument damage. The following safety symbols may be found on your instrument

and/or in this guide.

System Requirements

Hardware • 2.4 GHz processor with 4 GB RAM

•DVD/CD-ROM drive

• Resolution display 1280 ×1024 (XGA)

• 250 GB hard drive

•NTFS format

Software • Microsoft™ Windows™ 7 SP1 Operating System (32-bit or 64-bit)

• Thermo Scientific™ Xcalibur™ Foundation2

• Thermo Scientific™ TraceFinder™2

1Check release notes for compatibility with Ion Trap Series instrument control software.

2Check release notes for compatibility with Thermo Foundation, Xcalibur, and Ion Trap Series instrument

control software.

CAUTION Highlights hazards to humans, property, or the environment. Each CAUTION

notice is accompanied by an appropriate CAUTION symbol.

IMPORTANT Highlights information necessary to prevent damage to software, loss of

data, or invalid test results; or might contain information that is critical for optimal

performance of the system.

Note Highlights information of general interest.

Tip Highlights helpful information that can make a task easier.

Preface

Safety and Special Notices

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide xvii

BURN HAZARD: This symbol alerts you to the presence of a hot surface that

could or may cause burn injuries.

ELECTRICAL SHOCK HAZARD: This symbol indicates that an electrical shock

could or may occur.

FIRE HAZARD: This symbol indicates a risk of fire or flammability could or

may occur.

FLAMMABLE GAS HAZARD: This symbol alerts you to gases that are

compressed, liquefied or dissolved under pressure and can ignite on contact

with an ignition source. This symbol indicates this risk could or may cause

physical injury.

GLOVES REQUIRED: This symbol indicates that you must wear gloves when

performing a task or physical injury could or may occur.

HAND AND CHEMICAL HAZARD: This symbol indicates that chemical

damage or physical injury could or may occur.

INSTRUMENT DAMAGE: This symbol indicates that damage to the

instrument or component may occur. This damage may not be covered under

the standard warranty.

LIFTING HAZARD: This symbol indicates that a physical injury could or may

occur if two or more people do not lift an object.

MATERIAL AND EYE HAZARD: This symbol indicates that eye damage could

or may occur.

RADIOACTIVE HAZARD: This symbol indicates that exposure to radioactive

material could or may occur.

READ MANUAL: This symbol alerts you to carefully read your instrument’s

documentation to ensure your safety and the instrument’s operational ability.

Failing to carefully read the documentation could or may put you at risk for a

physical injury.

Preface

Contacting Us

xviii Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Contacting Us

There are several ways to contact Thermo Fisher Scientific for the information you need.

To contact Technical Support

To contact Customer Service for ordering information

To get local contact information for sales or service

Go to www.thermoscientific.com/wps/portal/ts/contactus.

To suggest changes to documentation or to Help

• Fill out a reader survey online at www.surveymonkey.com/s/PQM6P62.

• Send an e-mail message to the Technical Publications Editor at

techpubsaustin@thermofisher.com.

TOXIC SUBSTANCES HAZARD: This symbol indicates that exposure to a

toxic substance could occur and that exposure could or may cause personal

injury or death.

This is the general warning symbol that the ISO 3864-2 standard uses to

prevent personal injury. This symbol precedes the WARNING safety alert

word. In the vocabulary of ANSI Z535 signs, this symbol indicates a possible

personal injury hazard exists if the instrument is improperly used or if unsafe

actions occur. We use this symbol and another appropriate safety symbol to

alert you to an imminent or potential hazard that could cause personal injury.

Phone 800-532-4752

Fax 561-688-8736

E-mail us.techsupport.analyze@thermofisher.com

Knowledge base www.thermokb.com

Phone 800-532-4752

Fax 561-688-8731

E-mail us.customer-support.analyze@thermofisher.com

Web site www.thermo.com/ms

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 1

1

Site Preparation

This chapter contains detailed specifications for preparing your site before having the Ion

Trap Series system installed.

Contents

•Entrance Requirements

•Workbench & Space Requirements

•Lighting Requirements

•Power Requirements

•Gas Equipment Requirements

•Solvent Requirements

•Environmental Requirements

•Telephone Requirements

•Receiving Instructions

•What Happens Next?

1 Site Preparation

Entrance Requirements

2Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Entrance Requirements

1. See if your delivery doors are at least 102 cm (40 in.) across.

2. Consider any additional room you might need for moving the boxes around corners, into

elevators, or through doorways.

The MS, rotary-vane pump, and accessories are shipped in boxes with these approximate

dimensions:

Table 1. Box Dimensions

Box Length Width Height Weight

MS, rotary-vane

pump, and

accessories

102 cm (40

in.)

102 cm (40 in.) 117 cm (46 in.) 147 kg (325

lbs) maximum

Data System

(computer)

Modules such as the computer, monitor, gas chromatograph, and

optional instruments are shipped in their own containers. Their

dimensions and weights are less than those of the MS’ container.

Monitor

TRACE GC Ultra 79 cm (31 in.) 79 cm (31 in.) 79 cm (31 in.) 73 kg (161 lbs)

AI/AS 3000 II 36 cm (14 in.) 51 cm (20 in.) 41 cm (16 in.) 15 kg (33 lbs)

maximum

AI/AS 1310 36 cm (14 in.) 51 cm (20 in.) 36 cm (14 in.) 22 kg (49 lbs)

TriPlus 81 cm (32 in.) 140 cm (55 in.) 61 cm (24 in.) 54 kg (119 lbs)

maximum

TriPlus RSH (with

standard X-axis)

65 cm (26 in.) 100 cm (39 in.) 32 cm (13 in.) 55 kg (121 lbs)

maximum

TriPlus RSH (with

extended X-axis)

65 cm (26 in.) 105 cm (41 in.) 32 cm (13 in.) 60 kg (132 lbs)

1 Site Preparation

Workbench & Space Requirements

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 3

Workbench & Space Requirements

This section helps you prepare adequate space and weight required by the system components.

Table 2. Workbench and Space Requirements.

Depth Width Height Weight

Instrument cm in. cm in. cm in. kg lbs

Ion Trap Series MS 68 27 38 15 44 17 45 98

TRACE GC Ultra 65 25.5 61 24 48 19 48 105

FOCUS GC 68 27 36 14 46 18 30 66

TRACE 1300602444 17451855121

TRACE 1310672644 17451855121

Rotary Vane

Pumpa,b45 18 20 8 25 10 24 52

Computerb44.5 17.5 16.5 6.5 42 16.5 12 27

Monitorb43 17 40 16 42 16.5 14 30

Keyboardb18 7 47 18 2.5 1 1 2

AI/AS 3000

Autosamplerc

30 12 40 16 48 19 6 13

AS/AI 1310

Autosamplerc28 11 41 16 40 19 6 13

Tr i P l u s

Autosamplerc

50 19.7 54 21.3 69 27 25 56

TriPlus RSH

standard X axisc80 32 99 39 74 29 25 55

TriPlus RSH

extended X-axisc80 32 135 53 74 29 27 60

Direct Sample

Probed

54 21 33 13 12 5 6 13

aThis item is placed on the floor under the system, thereby reducing the weight requirements for your workbench.

bDimensions vary per manufacturer, therefore approximations are provided.

cMounts on top of GC.

dSits on top or to the side of the MS.

1 Site Preparation

Workbench & Space Requirements

4Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

3. Determine if you have at least 2 m (6 ft.) of workbench space for a standard Ion Trap

Series system. This includes 98 cm (39 in.) for the MS and GC, 40 cm (16 in.) to the left

of the MS for maintenance, and 47 cm (18 in.) for the monitor and keyboard.

Figure 1. Ion Trap Series System (Recommended Layout)

4. Supply a 1-in. i.d. hose to a fume hood or other suitable exhaust port. Consult local

Environmental and Safety Regulations for instructions in exhausting fumes from your

system.

5. Allow at least 30 cm (12 in.) of clearance behind the workbench. This space allows for

proper air circulation, clearance of the gas lines, electrical connections, and horizontal

movement of the TriPlus “Y” axis arm.

6. Make sure you have least 92 cm (3 ft.) of clearance above the instrument. This allows

room for optional accessories (such as autosamplers) and proper heat dissipation.

7. Make sure your workbench supports at least 119 kg (262 lbs) for a standard Ion Trap

Series system. Keep in mind additional instruments add to the total weight.

8. Ensure that your work area is stable and free from vibration, because the Ion Trap Series

system is a sensitive instrument. Be aware of vibrations caused by equipment located

nearby. For example, place the rotary-vane pump on the floor, because it vibrates as it

ITQ Mass Spec Gas Chromatograph (GC) Data System

Wall Outlet Wall Outlet Wall Outlet Phone Jack

Weight on the Workbench = 119 kg (262 lbs). Workbench Length = 2m (6 ft).

CAUTION INSTRUMENT DAMAGE. The pump exhaust contains carrier gas, solvents,

analytes, and a small amount of oil vapor, which are characteristic for these pumps to

emit. For your safety, the exhaust must be vented outside the building. A 1-in. (25.4 mm)

hose fitting is provided on the pump exhaust. You must provide a suitable hose to outside

the building or a fume hood. Positive pressure exhausts are not suitable.

1 Site Preparation

Lighting Requirements

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 5

operates. The rotary-vane pump should never be on the same workbench as the

instruments.

Lighting Requirements

1. Ensure that your work area is properly lit.

2. Use an overhead lamp to light your work area.

Use a small, high-intensity lamp when you clean the Ion Trap Series components.

Power Requirements

The power quality supplied to your system is very important. It must be stable and within the

minimum specifications listed in this section.

1. Test the power source quality in your laboratory to offset line voltage problems.

Improving power source quality is a complex task best handled by a company or

consultant specializing in that field. Contact your regional Thermo Scientific Customer

Service office for assistance in locating a power consultant. Having a poor quality power

source degrades mass spectrometer system performance. Here are some examples of poor

power source quality:

• Harmonic Distortion causes noise in the power supply lines and degrades

instrument performance. Harmonic distortion is a high-frequency disturbance

that may affect operation of your mass spectrometer. This disturbance appears as

distortion of the fundamental sine wave. Total harmonic distortion should be less

than 6%. For more information, see “EMC Directive 89/336/EEC” on page ix.

However, the power specifications for the mass spectrometer system are more

exact than those of the IEC.

• Sags are constant low line voltage, which cause the system to function erratically

or not at all.

• Slow changes are gradual, long-term changes in average root mean square (RMS)

voltage level, with typical durations greater than 2 s.

• Surges are constant high line voltage, which cause overheating and component

failure. Sags and surges are slow changes in average root mean square (RMS)

voltage level, with typical durations between 50 ms and 2 s.

• Transients, even of a few microseconds duration cause electronic devices to fail or

to degrade and significantly shorten their lives. Transients (or impulses) are brief

voltage excursions of up to several thousand volts with durations less than 50 ms.

2. Use Tab le 3 or Tab le 4 to determine how many circuits and wall outlets you need. Keep

in mind:

1 Site Preparation

Power Requirements

6Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

• Power must be single phase

• Wall outlets must have earth-ground hard-wired to the main panel

• Included power cords are at least 2 m (6 ft.) long

a. Look at your Customer Sales Order to determine if the instrument is 120 V or 230 V,

because it cannot be reconfigured once your field service engineer arrives.

b. Contact your local Customer Service office to discuss power cord sets concerns.

1 Site Preparation

Power Requirements

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 7

Table 3. 120 Vac Requirements. 120 V ac +6/-10%, 50/60 Hz ± 2 Hz, Single-Phase < 6% Total

Harmonic Distortion

Instrument Number of Circuits

Required Max. Current (A) Max. Power (VA)

Ion Trap Series1 MS

(including rotary-vane

pump)

1 15 1800

TRACE GC Ultra1

or FOCUS GC1

1 16

13.3

1920

1600

TRACE 1300/1310 GC1 1 16 2000

Computer2Additional

(as needed)

5 600

Monitor2Additional

(as needed)

2 240

AI/AS 1310 autosampler Additional

(as needed)

0.8 95

TriPlus Autosampler Additional

(as needed)

2 240

TriPlus RSH3Additional

(as needed)

3.2 200 with one

power module

400 with two

power modules

TriPlus 300 Headspace Additional

(as needed)

10.8 1300

Direct Sample Probe Additional

(as needed)

1.3 160

1This instrument must be on its own circuit.

2Power requirements vary by manufacturer.

3If using the temperature controlled door option, one additional circuit is needed.

1 Site Preparation

Power Requirements

8Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Table 4. 230 Vac Requirements: 230 V ac ±10%, 50/60 Hz ± 2 Hz, Single-Phase < 6% Total

Harmonic Distortion

Instrument Number of Circuits

Required

Max. Current

(A) Max. Power (VA)

Ion Trap Series1 MS

(including rotary-vane

pump)

1 7.8 1800

TRACE GC Ultra1

or FOCUS GC

1

1

10

8

1920

1600

TRACE 1300/1310 GC11 10 2000

Computer2Additional

(as needed)

2.6 600

Monitor2Additional

(as needed)

1240

AI/AS 1310 Autosampler Additional

(as needed)

0.4 95

TriPlus Autosampler Additional

(as needed)

1240

TriPlus RSH3Additional

(as needed)

1.7 200 with one

power module

400 with two

power modules

TriPlus 300 Headspace Additional

(as needed)

5.7 1300

Direct Sample Probe Additional

(as needed)

0.7 160

1This instrument must be on its own circuit.

2Power requirements vary by manufacturer.

3If using the temperature controlled door option, one additional circuit is needed.

1 Site Preparation

Power Requirements

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 9

3. Make sure you have at least three (3) separate circuits. They should be within 2 m (6 ft.)

of the instrument (see Figure 1).

For example, use one circuit for the GC, one circuit for the mass spectrometer, and one

circuit for the data system and any options. But, do not connect the GC and mass

spectrometer to the same circuit. The extra outlets illustrated in Figure 1 are for

additional options.

4. Make sure that the instruments you plug in do not exceed the maximum circuits and

current rating.

5. The Ion Trap Series MS comes with the required number and type of power cords for

your region. Ta bl e 5 will help you identify the correct power cord for your region and

instrument. It also includes the Thermo Scientific part numbers to reorder. You may use

any brand of power cord, as long as it is appropriate for your region.

Table 5. Power cord identification and ordering information by region. (Sheet 1 of 2)

Region

Thermo Scientific Part Number

C13 (for PC, monitors, and

autosamplers)

Thermo Scientific Part

Number C19 (for GC and MS)

North American 120V

North American 250V

Japanese 125V

Switzerland 250V

Australian 250V

1 Site Preparation

Power Requirements

10 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

China 250V

Europe-Schuko 250V

United Kingdom 250V

Danish 250V

Italian 250V

Israeli 250V

Indian 250V

Argentina 250V

Table 5. Power cord identification and ordering information by region. (Sheet 2 of 2)

Region

Thermo Scientific Part Number

C13 (for PC, monitors, and

autosamplers)

Thermo Scientific Part

Number C19 (for GC and MS)

1 Site Preparation

Gas Equipment Requirements

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 11

Gas Equipment Requirements

Provide the gas supplies for your system far enough ahead of time to have them ready for your

installation.

1. Obtain the correct carrier gas and regulator.

You must provide a supply of ultra-high purity helium for the GC carrier gas. A single

full-size tank is adequate for the typical flow of 30-50 mL/min. Typical cylinders are

about 23 cm (9 in.) wide by 140 cm (55 in.) tall and output >15,000 kPa (2200 psig). A

cylinder with about 8 m3 of helium will last about three (3) months. You must also

provide a suitable dual-stage stainless steel diaphragm regulator with a 1/8-in.

Swagelok-type connector.

Note The 250V region power cords will work with the 230V circuits.

Table 6. Carrier Gas Specifications

Gas Type Purity Outlet Pressure Regulator Connector

Helium 99.999%a

aUltra-high purity with less than 1.0 ppm each of water, oxygen, and total hydrocarbons and contained in

one tank.

400-700 kPa

(60-100 psig)

Dual stage brass regulator

with SS diaphragm. Use PN

116636-0580 or equivalent.

CGA-580

1 Site Preparation

Gas Equipment Requirements

12 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

2. [Optional] If necessary, obtain the correct CI Reagent Gas.

If your instrument is equipped with the chemical ionization (CI) option, you must

provide methane. Typical flow rates are only 1-3 mL/min, so smaller tanks such as 0.1 m3

can be used depending on your expected usage. You must also provide a suitable regulator

(dual-stage is preferred) with a 1/8-in. Swagelok type connector.

3. [Optional] Obtain the correct compressed air, if necessary.

Compressed air is required to cool the direct sample probe option. Refer to the

Compressed air specifications in this table before installation. Usage depends on how

often the direct sample probe option is used. We recommend a full-size tank like the size

of the helium cylinder. You must provide a single or dual-stage regulator with a 1/8-in.

Swagelok type connector.

Table 7. CI Gas Specifications

Gas Type Purity Outlet

Pressure Regulator Connector

Methane 99.99%

high-purity

35-240 kPa

(5-35 psig)

Dual stage brass regulator

with SS diaphragm. Use

PN 116636-0350 or

equivalent

CGA-350

Isobutane 99.9%

instrument

grade

35-240 kPa

(5-35 psig),

Consult gas supplier for

specific regulator

requirements

CGA-510

Ammonia 99.99%,

anhydrous

grade

35-240 kPa,

(5-35 psig)

Consult gas supplier for

specific regulator

requirements

CGA-240

CAUTION INSTRUMENT DAMAGE. Do not exceed 240 kPa (35 psig) to the CI reagent

gas flow module.

Note CI equipped systems use flammable gases, which must be suitably vented.

Table 8. Compressed Air Specifications

Gas Type Purity Outlet Pressure Regulator Connector

Direct

Sample

Probes

90%a

aPure, particle and oil free, and contained in one tank.

550-700 kPa

(80-100 psig)

Dual stage brass

regulator with SS

diaphragm. Use PN

116636-0590 or

equivalent.

CGA-590

1 Site Preparation

Gas Equipment Requirements

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 13

4. [Optional] If necessary, obtain the correct cryogenic coolant.

If you have purchased a cryogenic cooling option for the GC and PTV injector, then you

will need to provide a coolant supply like liquid nitrogen or liquid carbon dioxide. Be sure

to specify to your coolant supplier the exact cryogenic cooling option your GC is

configured for before you order cryogenic coolant.

Specific details for the TRACE GC Ultra is in the TRACE GC Ultra Site Preparation and

Installation Manual. Contact Customer Support for an additional copy or go to Web

address: http://www.thermo.com and type TRACE GC Ultra Manuals in the SEARCH

box. This will link you to the latest release of TRACE GC Ultra gas requirements.

5. Check your gas lines if the tanks are not located within 2 m (6 ft.) of the instrument. Gas

lines should be:

• As close as possible to the bench where the mass spectrometer system will be installed

• Copper or stainless steel for helium, methane, and isobutane

• Free of oil

• Free of moisture

• Stainless steel for ammonia

6. Obtain the correct gas line filters.

Gas line filters decrease impurities and contaminants from entering your system. Water,

oxygen, and total hydrocarbons should be less than 1 ppm in all cases to avoid high

background noise and contaminating the mass spectrometer system. Otherwise, you can

use appropriate gas filters to purify the gas. The ITQ is supplied with a gas line filter.

7. Store gas tanks and bottles properly.

Store gas tanks or lecture bottles where they cannot damage cables or gas lines. Also be

sure they are secured in accordance with standard safety practices.

1 Site Preparation

Solvent Requirements

14 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Solvent Requirements

1. Determine the solvent specifications to maintain and clean your system.

2. Store and handle these solvents in accordance with standard safety procedures.

3. Use laboratory grade detergents as specified. Common dishwashing detergents often leave

residue from fragrance or lotion additives.

Table 9. Solvent Specifications

Solvent Grade

Acetonea

aDo not use Acetone on components made from PEEK.

Reagent or HPLC Grade

Detergent Alconox, Micro, or equivalent

Glycerol Reagent Grade

Methanol Reagent or HPLC Grade

1 Site Preparation

Environmental Requirements

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 15

Environmental Requirements

Ensure your laboratory meets the minimum environment requirements. Regulating your

environment for temperature, humidity, particulate matter, and electrostatic discharge helps

maintain system performance.

1. Ensure that your room temperature is 15-31 °C (59-88 °F).

The ideal operating temperature is 18-21 ºC [64- 70 ºF]. Electronic components generate

heat while operating; the heat must dissipate into the surrounding air for the components

to continue to operate. This is why it is important to maintain a consistent temperature

and air flow around the system. Cooling a basic mass spectrometer system with air

conditioning requires approximately 3,940 W (13,450 Btu hr-1) of capacity (see

Table 10 ). The cost of air conditioning is more than offset by good sample throughput

and reduced repair costs.

Table 10. Maximum Heat Output

Instrument Heat Output (in

Btu hr-1) Heat Output (in W)

Standard Ion Trap Series MS 2390 700

TRACE GC Ultra 8190 2400

FOCUS GC 5500 1600

Monitor 820 240

Computer 2050 600

Options AS 2000, AI/AS 3000

Autosampler

570 170

TriPlus Autosampler 820 240

Tekmar Velocity 2040 600

Tekmar Aquatek 2570 750

Tekmar Solatek 2460 720

Direct Sample Probe 820 240

Hewlett-Packard DeskJet

printer/plotter

410 120

Hewlett-Packard LaserJet

printer

3200 940

1 Site Preparation

Environmental Requirements

16 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

2. Ensure that the relative humidity in your laboratory is between 40 and 80%, with no

condensation.

a. If you operate your mass spectrometer system in low humidity, static electricity

accumulates and discharges, which shortens the life-cycle of electronic components.

In contrast, high humidity causes condensation and short circuits to occur.

b. Put a temperature and humidity monitor in your laboratory to ensure that

temperature and humidity do not exceed these specifications.

3. Ensure that the air in your site is free of excess particulate matter.

For reference, the air should contain fewer than 100,000 particles (larger than 5 μm) per

28 L (1 cubic foot). Dust forms a layer on electronic components that reduces their heat

dissipation, causing them to overheat. Dust, smoke and other particulate matter clogs air

pathways, reducing air flow around your electronic components.

4. Ensure that your site is free of electrostatic discharge.

Electrostatic Discharge (ESD) damages the electronic components of your mass

spectrometer system. Human beings cannot detect ESD until the potential is about

4000 V. Many electronic Components, however, are damaged by a discharge of

electrostatic potential of as little as 100 V. ESD can damage sensitive components,

resulting in premature failures.

ESD Precautions

1. Use a static-dissipating floor covering (such as tile or conductive linoleum) in your

laboratory.

2. Use laboratory chairs covered with natural fiber or other static-dissipating material.

3. Wear laboratory coats and clothing made of natural fiber or other static-dissipating

material.

4. Do not place polystyrene (foam) cups or packing materials on the instrument.

1 Site Preparation

Telephone Requirements

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 17

Telephone Requirements

1. Check if your telephone is within 2 m (6 ft.) of your system.

This allows you to operate the system while talking on the phone with Thermo Scientific

Technical Support, should the need arise. Thermo Scientific Technical Support staff are

available by phone or fax to help you.

2. Call your Thermo Scientific Customer Service Representative for questions about parts,

instruments, or service.

Receiving Instructions

1. Complete the Preinstallation Checklist located at the front of your guide and forward it

to the Customer Support office.

2. When the boxes arrive, determine if your instrument was shipped either Domestic or

International, to determine shipping liabilities.

•Domestic Shipments

Instruments are shipped in one of two manners: Free On Board (FOB) Austin, TX, USA,

or FOB destination.

The method of shipment determines who has responsibility for filing a claim against the

carrier if the system is damaged in transit.

Most systems are shipped FOB Austin, TX, and in this instance any damages incurred in

shipment are the responsibility of the purchaser and the carrier. If necessary, we will assist

with filing claims and (billable) repairs. If the system is shipped FOB destination, we will

file a claim against the carrier. However, we do not accept liability for damage if materials

are received with obvious damage, and the damage is not recorded on the receiving

documents.

• International Shipments

Instruments shipped outside of the USA are usually shipped Carriage and Insurance Paid

(CIP) to Destination, unless otherwise specified. If the system is shipped CIP destination

and damages occur during shipment, we will file a claim against the carrier. However, we

do not accept liability for damage if materials are received with obvious damage, and the

damage is not recorded on the receiving documents.

1 Site Preparation

What Happens Next?

18 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

3. Inspect the boxes for damage when the instrument arrives.

Our instruments are shipped by electronic equipment carriers who specialize in the

handling of delicate equipment. Occasionally, however, equipment is inadvertently

damaged in transit. By following these instructions, you can protect yourself and your

company from any possible loss or liability.

Please inspect for obvious damage or evidence of rough handling, including triggering of

the Shockwatch® or Tiltwatch™ labels when receiving material.

4. If you see external damage:

a. Do not refuse shipment. Instead, make a note of any damage on the receiving

documents and leave the instruments in their original packaging.

b. Request inspection from the carrier within 15 days of delivery (3 days for

international), and contact our Customer Service Representative to report the

damage.

c. Move the cartons to a protected location, preferably the installation site.

d. Leave the boxes as complete as possible and do not unpack or open the boxes without

our Field Service Engineer (FSE) present. Doing otherwise may void your warranty

or order.

What Happens Next?

Tell your Customer Service Representative that your instruments are ready to be installed.

If your site meets all items listed on the Preinstallation Checklist, then a standard mass

spectrometer system takes about 48-hours for an engineer to install.

Your field service engineer will unpack and install your system. Next, the engineer will run

tests to make sure the system is working according to factory specifications. Afterwards, the

engineer will provide a brief demonstration on how to use your system and the software. Your

field service engineer will perform the following:

1. Unpack and install your Ion Trap Series system including optional instruments.

2. Install a TR-5MS column in the GC and allow the MS to pump down overnight.

3. Run a series of tests the next day to verify the performance of the system.

The field service engineer performs the same series of injections that we do at the factory

in your laboratory. For example, at the factory, your Ion Trap Series is put through a series

of tests to qualify that it meets specifications before shipping.

a. First, it is thoroughly checked for leaks in the vacuum systems.

b. Next, it is put through a series of diagnostic checks to verify all of the electronics are

functioning properly.

c. Finally, it is attached to your GC and the complete system is tested.

1 Site Preparation

What Happens Next?

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 19

4. Perform a series of injections with the test compound to verify the system meets signal

and noise requirements.

5. Place the instrument methods on your hard-drive for each test and the data file generated

on your PC for your review.

These methods are stored under \Xcalibur\Examples\Methods and the raw data files are

stored under \Xcalibur\Data\Factory Test Data.

6. Verify that the system is in working order and meets the required Ion Mode

Specifications.

1 Site Preparation

What Happens Next?

20 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 21

A

End User License Agreements

This appendix contains the end user license agreements (EULA) for TraceFinder 3.2 with

Apache OpenOffice 4.0.1 with TraceFinder 3.2, and Microsoft Office Professional Plus 2013

with TraceFinder 3.2. Read the agreement and sign the designated area of the Preinstallation

Survey.

End-User License Agreement–Apache OpenOffice 4.0.1 and

TraceFinder 3.2

IF YOU PURCHASED TRACEFINDER 3.2 SOFTWARE PACKAGE THEN YOU ALSO

HAVE RECEIVED APACHE OPENOFFICE 4.0.1 AND YOU AGREE TO BE BOUND

BY BOTH OF THE END-USER LICENSE AGREEMENTS (EULA) FOR THERMO

FISHER SCIENTIFIC TRACEFINDER 3.2 AND APACHE OPENOFFICE 4.0.1

Is OpenOffice really free for any user? OpenOffice is free for use by everybody. You may

take this copy of OpenOffice and install it on as many computers as you like, and use it for

any purpose you like (including commercial, government, public administration and

educational use). For further details see the license text delivered together with OpenOffice or

http://www.openoffice.org/license.html

Why is OpenOffice free for any user? You can use this copy of OpenOffice today free of

charge because individual contributors and corporate sponsors have designed, developed,

tested, translated, documented, supported, marketed, and helped in many other ways to make

OpenOffice what it is today - the world's leading open-source office software.

If you appreciate their efforts, and would like to ensure Apache OpenOffice continues into

the future, please consider contributing to the project - see

http://openoffice.apache.org/get-involved.html for details on contributing time and

http://www.apache.org/foundation/contributing.html for details on donations. Everyone has

a contribution to make.

Contents

End-User License Agreement–Apache OpenOffice 4.0.1 and TraceFinder 3.2

End-User License Agreement–Microsoft Office Professional Plus 2013 and

Tr a c e Fi n d e r 3 .2

END-USER LICENSE AGREEMENT – APACHE OPENOFFICE 4.0.1

A End User License Agreements

End-User License Agreement–Apache OpenOffice 4.0.1 and TraceFinder 3.2

22 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

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A End User License Agreements

End-User License Agreement–Apache OpenOffice 4.0.1 and TraceFinder 3.2

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 23

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excluding those notices that do not pertain to any part of the Derivative Works; and

4. If the Work includes a "NOTICE" text file as part of its distribution, then any

Derivative Works that You distribute must include a readable copy of the attribution

notices contained within such NOTICE file, excluding those notices that do not pertain

to any part of the Derivative Works, in at least one of the following places: within a

NOTICE text file distributed as part of the Derivative Works; within the Source form or

documentation, if provided along with the Derivative Works; or, within a display

generated by the Derivative Works, if and wherever such third-party notices normally

appear. The contents of the NOTICE file are for informational purposes only and do not

modify the License. You may add Your own attribution notices within Derivative Works

that You distribute, alongside or as an addendum to the NOTICE text from the Work,

provided that such additional attribution notices cannot be construed as modifying the

License.

A End User License Agreements

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24 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

You may add Your own copyright statement to Your modifications and may provide

additional or different license terms and conditions for use, reproduction, or distribution of

Your modifications, or for any such Derivative Works as a whole, provided Your use,

reproduction, and distribution of the Work otherwise complies with the conditions stated in

this License.

5. Submission of Contributions. Unless You explicitly state otherwise, any Contribution

intentionally submitted for inclusion in the Work by You to the Licensor shall be under the

terms and conditions of this License, without any additional terms or conditions.

Notwithstanding the above, nothing herein shall supersede or modify the terms of any

separate license agreement you may have executed with Licensor regarding such

Contributions.

6. Tra d em ar ks . This License does not grant permission to use the trade names, trademarks,

service marks, or product names of the Licensor, except as required for reasonable and

customary use in describing the origin of the Work and reproducing the content of the

NOTICE file.

7. Disclaimer of Warranty. Unless required by applicable law or agreed to in writing,

Licensor provides the Work (and each Contributor provides its Contributions) on an "AS IS"

BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or

implied, including, without limitation, any warranties or conditions of TITLE,

NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A PARTICULAR

PURPOSE. You are solely responsible for determining the appropriateness of using or

redistributing the Work and assume any risks associated with Your exercise of permissions

under this License.

8. Limitation of Liability. In no event and under no legal theory, whether in tort (including

negligence), contract, or otherwise, unless required by applicable law (such as deliberate and

grossly negligent acts) or agreed to in writing, shall any Contributor be liable to You for

damages, including any direct, indirect, special, incidental, or consequential damages of any

character arising as a result of this License or out of the use or inability to use the Work

(including but not limited to damages for loss of goodwill, work stoppage, computer failure or

malfunction, or any and all other commercial damages or losses), even if such Contributor has

been advised of the possibility of such damages.

9. Accepting Warranty or Additional Liability. While redistributing the Work or Derivative

Works thereof, You may choose to offer, and charge a fee for, acceptance of support, warranty,

indemnity, or other liability obligations and/or rights consistent with this License. However,

in accepting such obligations, You may act only on Your own behalf and on Your sole

responsibility, not on behalf of any other Contributor, and only if You agree to indemnify,

defend, and hold each Contributor harmless for any liability incurred by, or claims asserted

against, such Contributor by reason of your accepting any such warranty or additional

liability.

END-USER LICENSE AGREEMENT – THERMO FISHER SCIENTIFIC

TRACEFINDER 3.2

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Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 25

A. THE PARTIES

1. The parties to this Agreement are Thermo Finnigan LLC and the Customer. “Thermo”

and "Thermo Fisher Scientific" means Thermo Finnigan LLC, the licensor of the

TraceFinder version 3.2 software that is the subject of this Agreement (“Software”). The

"Customer" is the person or organization that orders, uses and pays the applicable license

fee, if any, for the Software.

2. In granting this license to the Customer, Thermo may also be acting on behalf of

Information Partners. "Information Partners" are entities that have licensed to Thermo

software for sublicensing or programs or code included as part of the Software. Each

Information Partner retains its right to enforce its trademarks, copyrights, patents, trade

secrets and other rights concerning the Software directly against the Customer.

B. LICENSE GRANT

1. Thermo grants to the Customer a non-exclusive, non-transferable license to use the

Software and any accompanying manuals and reference and instructional materials

(“Documentation”) solely for the purposes for which the Software is intended as set forth

in the Documentation and only for Customer’s internal business, scientific and research

purposes.

2. The Customer is authorized to install and use two (2) copies of the Software and

maintain one (1) uninstalled copy for backup purposes. T

3. The Software and the Documentation are and shall remain the property of Thermo or an

Information Partner as applicable and are protected by all applicable intellectual property,

copyright, and patent laws, as well as international treaties and other contractual rights.

The Software and Documentation are and shall remain the confidential and proprietary

information of Thermo and Information Partners, and Customer shall not disclose the

Software and Documentation to any third party or place such items in the public domain.

4. No title, ownership or interest in the Software or Documentation is transferred to

Customer by this Agreement or by the payment of any fee.

5. Any rights not expressly granted herein to Customer are reserved to Thermo and

Information Partners.

C. WHAT CUSTOMER MAY DO

1. Use the Software only to perform the functions for which the Software was designed as set

forth in the applicable Documentation and only in connection with Customer’s internal

business, scientific and research purposes.

D. WHAT CUSTOMER MAY NOT DO

1. Create derivative works of, decompile, reverse engineer or attempt to determine the

source code of the Software.

2. Sell, distribute or commercially exploit the Software and Documentation without the

prior written consent of Thermo.

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26 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

3. Transfer, assign or sublicense the Software or Documentation without the prior written

approval of Thermo; provided, however, that Customer may transfer the Software, upon

written notification to Thermo, to an affiliate or successor in interest of Customer for

such affiliate’s or successor’s use in accordance with the terms and conditions of this

Agreement.

E. LIMITATION OF WARRANTIES AND LIABILITY

1. The Software provided under this Agreement is a tool. Its successful use and operation is

dependent on the skill of the operator, and it is not a substitute for skilled human

judgment. It is possible to obtain erroneous results by giving inappropriate instructions to

the Software.

2. THERMO AND ITS INFORMATION PARTNERS PROVIDE THE SOFTWARE

AND DOCUMENTATION TO CUSTOMER ON AN “AS IS” BASIS AND MAKE

NO REPRESENTATIONS OR WARRANTIES OF ANY KIND WITH RESPECT

TO THE SOFTWARE AND DOCUMENTATION, INCLUDING BUT NOT

LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A

PARTICULAR PURPOSE AND NONINFRINGEMENT. THERMO DISCLAIMS

ALL WARRANTIES WITH RESPECT TO THIRD-PARTY PRODUCTS,

INCLUDING SOFTWARE PROVIDED BY INFORMATION PARTNERS.

3. THERMO AND INFORMATION PARTNERS ASSUME NO RESPONSIBILITY

FOR THE USE OF THE SOFTWARE AND DOCUMENTATION BY THE

CUSTOMER OR ANY OTHER PARTY, AND THERMO AND INFORMATION

PARTNERS SHALL NOT BE LIABLE FOR LOSS OF PROFITS, USE, BUSINESS,

REVENUES, DATA, INFORMATION OR GOODWILL OR FOR INCIDENTAL,

CONSEQUENTIAL, INDIRECT, PUNITIVE OR EXEMPLARY DAMAGES AS A

RESULT OF SUCH USE, EVEN IF THERMO AND/OR INFORMATION

PARTNERS ARE EXPRESSLY MADE AWARE OF THE POSSIBILITY THEREOF

OR ARE NEGLIGENT. Thermo cannot and does not guarantee or warrant that the

Software or files available for downloading through any Thermo download Web Site are

or will be free of infection or viruses, worms, Trojan horses or other code that manifest

contaminating or destructive properties. Customer is responsible for implementing

sufficient procedures and checkpoints to satisfy its particular requirements for accuracy of

data input and output, and for maintaining a means external to the Site for the

reconstruction of any lost data. It is solely Customer’s responsibility to evaluate the

accuracy, completeness and usefulness of all Software. Thermo does not warrant the

accuracy, currency, and completeness of Software or that the Software is error-free, will

accomplish any particular result or will operate without interruption.

4. IN NO EVENT MAY ANY ACTION BE BROUGHT AGAINST THERMO OR

INFORMATION PARTNERS ARISING OUT OF THIS AGREEMENT MORE

THAN ONE YEAR AFTER THE CLAIM OR CAUSE OF ACTION ARISES,

DETERMINED WITHOUT REGARD TO WHEN THE CUSTOMER SHALL

HAVE LEARNED OF THE ALLEGED DEFECT, INJURY, OR LOSS.

5. IN NO EVENT SHALL THE TOTAL LIABILITY OF INFORMATION PARTNERS

AND THERMO EXCEED THE LICENSE FEE PAID BY CUSTOMER FOR THE

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Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 27

SOFTWARE GIVING RISE TO THE CLAIM (WHETHER SUCH LIABILITY

ARISES FROM TORT, NEGLIGENCE, STRICT LIABILITY, BREACH OF

WARRANTY, BREACH OF CONTRACT OR OTHERWISE).

6. SOME JURISDICTIONS DO NOT ALLOW THE EXCLUSION OR LIMITATION

OF IMPLIED WARRANTIES OR LIABILITY FOR INCIDENTAL OR

CONSEQUENTIAL DAMAGES, SO THE ABOVE EXCLUSIONS OR

LIMITATIONS MAY NOT APPLY TO EVERY CUSTOMER WHERE

APPLICABLE.

F. APPLICABLE LAW

1. This Agreement will be governed by and construed in accordance with the laws of the

Commonwealth of Massachusetts without giving effect to the principles of conflict of

laws thereof, and both parties consent to the jurisdiction of the federal and state courts

situated in the Commonwealth of Massachusetts in any action arising under this

Agreement. In the event of any legal proceeding between Thermo and Customer relating

to this Agreement, neither party may claim the right to a trial by jury, and both parties

waive any right to a trial by jury. The application of the U.N. Convention on Contracts

for the International Sale of Goods to this Agreement is hereby expressly excluded.

G. EXPORT COMPLIANCE

1. Customer acknowledges that the Software and Documentation is subject to export

controls of the U.S. Government, which may include those of the Export Administration

Regulations of the U.S. Department of Commerce. Customer agrees to comply with the

Export Administration Regulations and all other applicable laws and regulations relating

to the export, re-export, or import of the Software and Documentation.

H. ENTIRE UNDERSTANDING

1. This Agreement constitutes the entire understanding of the parties with respect to the

subject matter hereof. Without limiting the generality of the foregoing, it is expressly

agreed that the terms of any prior Customer purchase order will be subject to the terms of

this license and that any acceptance of a purchase order by Thermo will be for

acknowledgment purposes only and none of the terms set forth in the purchase order will

be binding upon Thermo. Any representation, promise, warranty, covenant or

undertaking not expressly set forth in this license shall not be deemed a part of the

Agreement or otherwise legally effective.

I. SEVERABILITY

1. If a term or condition of this Agreement is held to be invalid or unenforceable, the

remaining terms and conditions of this Agreement will remain in full force and effect.

J. AUDIT

1. Customer grants Thermo the right to audit, during regular business hours, Customer’s

use of the Software and Documentation to ensure compliance with this Agreement.

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K. INDEMNIFICATION

1. Customer agrees to indemnify, defend and hold harmless Thermo and Information

Partners from and against any and all claims of third parties arising out of or related to

Customer’s use of the Software, regardless whether such claims were foreseeable by

Thermo or the Information Partners.

L. TERMINATION

1. Thermo may, in addition to its other legal rights and remedies and upon written notice to

Customer, terminate this Agreement in the event Customer breaches any term of this

Agreement or becomes insolvent, files or has filed against it a petition in bankruptcy or

undergoes a reorganization pursuant to a petition in bankruptcy filed with respect to it.

2. Upon termination, Customer will, unless otherwise agreed to in writing by Thermo,

immediately return to Thermo the Software and Documentation, and all copies thereof,

and will erase all electronic storage of copies of the Software.

3. Termination of this Agreement will not affect any obligation or liability of Customer

arising prior to termination, and the following sections shall survive: 2b, 2c, 2d, 2.2, 3

through 9, 10b, 10c, 11 and 12.

M. FORCE MAJEURE

1. Neither Thermo nor Information Partners will be responsible for any delay or failure in

performance resulting from any cause beyond their control.

N. RESTRICTED RIGHTS APPLICABLE TO U.S. GOVERNMENT ONLY

1. Use, duplication or disclosure of any included database, Software or associated materials

by the U.S. Government is subject to the restricted rights applicable to commercial

computer software (under FAR 52.227019 and DFARS 252.227-7013 or parallel

regulations). The manufacturer for this purpose is Thermo Finnigan LLC, 355 River

Oaks Parkway, San Jose, CA 95134-1908 or the applicable Information Partner.

End-User License Agreement–Microsoft Office Professional Plus

2013 and TraceFinder 3.2

IF YOU PURCHASED THE TRACEFINDER 3.2 WITH MICROSOFT OFFICE

SOFTWARE PACKAGE THEN YOU AGREE TO BE BOUND BY THIS COMBINED

END-USER LICENSE AGREEMENT (EULA) FOR THERMO FISHER SCIENTIFIC

TRACEFINDER 3.2 AND MICROSOFT OFFICE PROFESSSIONAL PLUS 2013

Thermo Scientific TraceFinder 3.2 with Microsoft Office Professional Plus 2013 Edition

Licenses: One (1) for Microsoft Office Professional Plus 2013 Edition and two (2) for

Thermo Fisher Scientific TraceFinder 3.2.

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Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 29

Thank you for choosing a software application that includes Microsoft Office 2013. This is a

license agreement between the licensor of the software application or suite of applications with

which you acquired the Microsoft software (“licensor”) and you. For your convenience, we’ve

organized this agreement into two parts. The first part includes introductory terms; the

Additional Terms follow and contain greater detail. You should review the entire agreement,

including any linked terms, because all of the terms are important and together create this

contract that applies to you. You can review linked terms by pasting the forward link into your

browser window. THE ADDITIONAL TERMS CONTAIN A BINDING ARBITRATION

CLAUSE AND CLASS ACTION WAIVER. IF YOU LIVE IN THE UNITED STATES,

THESE AFFECT YOUR RIGHTS TO RESOLVE A DISPUTE WITH THE LICENSOR

OR MICROSOFT, AND YOU SHOULD READ THEM CAREFULLY.

BY ACCEPTING THIS AGREEMENT OR USING THE SOFTWARE, YOU AGREE

TO ALL OF THESE TERMS AND CONSENT TO THE TRANSMISSION OF

CERTAIN INFORMATION DURING ACTIVATION AND FOR INTERNET-BASED

FEATURES OF THE SOFTWARE. IF YOU DO NOT ACCEPT AND COMPLY WITH

THESE TERMS, YOU MAY NOT USE THE SOFTWARE OR FEATURES. Instead, you

should return it to the place where you purchased the software license, for a refund or credit.

How can I use the software? We do not sell our software or your copy of it – we only license

it. Under our license we grant you the right to install and run that one copy on one computer

(the licensed computer) for use by one person at a time, but only if you comply with all the

terms of this agreement. Our software license is permanently assigned to the licensed

computer. Please refer to the Additional Terms for licenses and conditions that are specific to

certain countries, Limited Rights Versions and Special Editions of the software. The

components of the software are licensed as a single unit. You may not separate or virtualize the

components and install them on different computers. The software may include more than

one version, such as 32-bit and 64-bit, and you may install and use only one version at a time.

Except for the permitted use described under “Remote Access” below, this license is for direct

use of the software only through the input mechanisms of the licensed computer, such as a

keyboard, mouse, or touchscreen. It does not give permission for installation of the software

on a server or for use by or through other computers or devices connected to the server over

an internal or external network. The software also is not licensed for commercial hosting. For

more information on multiple user scenarios and virtualization, see the Additional Terms.

How do I obtain a backup copy? You may order or download a backup copy of the software

from microsoft.com/office/backup. You may not distribute the backup copy of the software.

You may use it only to reinstall the software on the licensed computer.

Can I transfer the software to another computer or user? You may not transfer the software

to another computer or user. You may transfer the software directly to a third party only, as

part of a transfer of the integrated software turnkey application or suite of applications (the

“Unified Solution”) delivered to you by or on behalf of the Licensor solely as part of the

END-USER LICENSE AGREEMENT – MICROSOFT OFFICE PROFESSIONAL PLUS 2013

EDITION

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30 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Unified Solution, and as installed on the licensed computer, with the Certificate of

Authenticity label, if applicable, and this agreement. Before the transfer, that party must agree

that this agreement applies to the transfer and use of the software. You may not retain any

copies.

How does Internet activation work? Activation associates the use of the software with a

specific computer or device. During activation, the software will automatically contact

Microsoft or its affiliate to confirm the license is associated with the licensed computer. This

process is called “activation.” Because activation is meant to identify unauthorized changes to

the licensing or activation functions of the software, and to otherwise prevent unlicensed use

of the software, you have no right to use the software after the time permitted for

activation and you may not bypass or circumvent activation. If you have not entered a

product key during the time permitted for activation, most features of the software will stop

running.

Does the software collect my personal information? If you connect your computer to the

Internet, some features of the software may connect to Microsoft or service provider computer

systems to send or receive information. You may not always receive a separate notice when

they connect. If you choose to use any of these features, you agree to send or receive this

information when using that feature. Many of these features can be switched off or you can

choose not to use them.

How do we use your information? Microsoft uses the information it collects through the

software features to upgrade or fix the software and otherwise improve our products and

services. In certain circumstances, we also share it with others. For example, we share error

reports with relevant hardware and software vendors, so that they can use the information to

improve how their products run with Microsoft products. You agree that we may use and

disclose the information as described in our Privacy Statement at

r.office.microsoft.com/r/rlidOOPrivacyState15HighLight?clid=1033.

What does this agreement apply to? This agreement applies to the software, the media on

which you received the software, and also any Microsoft updates, supplements, and services

for the software, unless other terms come with them.

Are there things I’m not allowed to do with the software? Yes. Because the software is

licensed, not sold, Microsoft reserves all rights (such as rights under intellectual property laws)

not expressly granted in this agreement. In particular, this license does not give you any right

to, and you may not: use or virtualize features of the software separately, publish, copy (other

than the permitted backup copy), rent, lease, or lend the software; transfer the software

(except as permitted by this agreement), attempt to circumvent technical protection measures

in the software, reverse engineer, decompile, or disassemble the software, except if the laws

where you live permit this even when our agreement does not. In that case, you may do only

what your law allows. When using Internet-based features, you may not use those features in

any way that could interfere with anyone else’s use of them, or to try to gain access to any

service, data, account or network, in an unauthorized manner.

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Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 31

What about upgrading or converting the software? If you install the software covered by

this agreement as an upgrade or conversion to your existing software, then the upgrade or

conversion replaces the original software that you are upgrading or converting from. You do not

retain any rights to the original software after you have upgraded and you may not continue to

use it or transfer it in any way. This agreement governs your rights to use the upgrade software

and replaces the agreement for the software from which you upgraded.

ADDITIONAL TERMS

A. LICENSE RIGHTS AND MULTI USER SCENARIOS

1. Computer. In this agreement, “computer” means a hardware system (whether physical or

virtual) with a storage device capable of running the software. A hardware partition or

blade is considered to be a computer.

2. Multiple or Pooled Connections. You may not use hardware or software to multiplex or

pool connections, or otherwise allow multiple users or multiple computers or devices to

access or use the software indirectly through the licensed computer.

3. Use in a Virtualized Environment. If you use virtualization software, including client

hyper-v, to create one or more virtual computers on a single computer hardware system,

each virtual computer, and the physical computer, is considered a separate computer for

purposes of this agreement. This license allows you to install only one copy of the

software for use on one computer, whether that computer is physical or virtual. If you

want to use the software on more than one computer, you must obtain separate copies of

the software and a separate license for each copy. Content protected by digital rights

management technology or other full-volume disk drive encryption technology may be

less secure in a virtualized environment.

4. Remote access. The user that primarily uses the licensed computer is the “primary user.”

The primary user may access and use the software installed on the licensed device

remotely from any other device, as long as the software installed on the licensed device is

not being used non-remotely by another user simultaneously. As an exception, you may

allow others to access the software simultaneously only to provide you with technical

support.

B. BINDING ARBITRATION AND CLASS ACTION WAIVER

1. Application. This Section B applies to any dispute EXCEPT IT DOES NOT INCLUDE

A DISPUTE RELATING TO THE ENFORCEMENT OR VALIDITY OF YOUR,

THE LICENSOR’S, OR EITHER OF OUR LICENSORS’ INTELLECTUAL

PROPERTY RIGHTS. Dispute means any dispute, action, or other controversy between

you and the licensor, or you and Microsoft, concerning the software (including its price)

or this agreement, whether in contract, warranty, tort, statute, regulation, ordinance, or

any other legal or equitable basis. “Dispute” will be given the broadest possible meaning

allowable under law.

2. Notice of Dispute. In the event of a dispute, you or the licensor must give the other a

Notice of Dispute, which is a written statement of the name, address, and contact

information of the party giving it, the facts giving rise to the dispute, and the relief

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requested. Send it by U.S. Mail to the licensor, ATTN: LEGAL DEPARTMENT. The

licensor will send any Notice of Dispute to your U.S. Mail address if available, or

otherwise to your e-mail address. You and the licensor will attempt to resolve any dispute

through informal negotiation within 60 days from the date the Notice of Dispute is sent.

After 60 days, you or the licensor may commence arbitration.

3. Small Claims Court. You may also litigate any dispute in small claims court in your

county of residence or the licensor’s principal place of business, if the dispute meets all

requirements to be heard in the small claims court. You may litigate in small claims court

whether or not you negotiated informally first.

4. BINDING ARBITRATION. IF YOU AND THE LICENSOR, OR MICROSOFT,

DO NOT RESOLVE ANY DISPUTE BY INFORMAL NEGOTIATION OR IN

SMALL CLAIMS COURT, ANY OTHER EFFORT TO RESOLVE THE DISPUTE

WILL BE CONDUCTED EXCLUSIVELY BY BINDING ARBITRATION. YOU

ARE GIVING UP THE RIGHT TO LITIGATE (OR PARTICIPATE IN AS A PARTY

OR CLASS MEMBER) ALL DISPUTES IN COURT BEFORE A JUDGE OR JURY.

Instead, all disputes will be resolved before a neutral arbitrator, whose decision will be

final except for a limited right of appeal under the Federal Arbitration Act. Any court

with jurisdiction over the parties may enforce the arbitrator’s award.

5. CLASS ACTION WAIVER. ANY PROCEEDINGS TO RESOLVE OR LITIGATE

ANY DISPUTE IN ANY FORUM WILL BE CONDUCTED SOLELY ON AN

INDIVIDUAL BASIS. NEITHER YOU, THE LICENSOR, NOR MICROSOFT,

WILL SEEK TO HAVE ANY DISPUTE HEARD AS A CLASS ACTION, AS A

PRIVATE ATTORNEY GENERAL ACTION, OR IN ANY OTHER PROCEEDING

IN WHICH ANY PARTY ACTS OR PROPOSES TO ACT IN A REPRESENTATIVE

CAPACITY. NO ARBITRATION OR PROCEEDING WILL BE COMBINED

WITH ANOTHER WITHOUT THE PRIOR WRITTEN CONSENT OF ALL

PARTIES TO ALL AFFECTED ARBITRATIONS OR PROCEEDINGS.

6. Arbitration Procedure. Any arbitration will be conducted by the American Arbitration

Association (the “AAA”) under its Commercial Arbitration Rules. If you are an individual

and use the software for personal or household use, or if the value of the dispute is

$75,000 or less whether or not you are an individual or how you use the software, the

AAA Supplementary Procedures for Consumer-Related Disputes will also apply. To

commence arbitration, submit a Commercial Arbitration Rules Demand for Arbitration

form to the AAA. You may request a telephonic or in-person hearing by following the

AAA rules. In a dispute involving $10,000 or less, any hearing will be telephonic unless

the arbitrator finds good cause to hold an in-person hearing instead. For more

information, see adr.org or call 1-800-778-7879. You agree to commence arbitration only

in your county of residence or in the licensor’s principal place of business. The licensor

agrees to commence arbitration only in your county of residence. The arbitrator may

award the same damages to you individually as a court could. The arbitrator may award

declaratory or injunctive relief only to you individually, and only to the extent required to

satisfy your individual claim.

7. Arbitration Fees and Incentives.

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a. Disputes Involving $75,000 or Less. The licensor will promptly reimburse your filing

fees and pay the AAA’s and arbitrator’s fees and expenses. If you reject the licensor’s

last written settlement offer made before the arbitrator was appointed (“last written

offer”), your dispute goes all the way to an arbitrator’s decision (called an “award”),

and the arbitrator awards you more than the last written offer, the licensor will give

you three incentives: (1) pay the greater of the award or $1,000; (2) pay twice your

reasonable attorney’s fees, if any; and (3) reimburse any expenses (including expert

witness fees and costs) that your attorney reasonably accrues for investigating,

preparing, and pursuing your claim in arbitration. The arbitrator will determine the

amounts.

b. Disputes Involving More Than $75,000. The AAA rules will govern payment of

filing fees and the AAA’s and arbitrator’s fees and expenses.

c. Disputes Involving Any Amount. In any arbitration you commence, the licensor will

seek its AAA or arbitrator’s fees and expenses, or your filing fees it reimbursed, only if

the arbitrator finds the arbitration frivolous or brought for an improper purpose. In

any arbitration the licensor commences, it will pay all filing, AAA, and arbitrator’s

fees and expenses. It will not seek its attorney’s fees or expenses from you in any

arbitration. Fees and expenses are not counted in determining how much a dispute

involves.

8. Claims or Disputes Must be Filed Within One Year. To the extent permitted by law, any

claim or dispute under this agreement to which Section B applies must be filed within

one year in small claims court (Section B.3) or in arbitration (Section B.4). The one-year

period begins when the claim or dispute first could be filed. If such a claim or dispute is

not filed within one year, it is permanently barred.

9. Severability. If the class action waiver in Section B.5 is found to be illegal or

unenforceable as to all or some parts of a dispute, then Section B (arbitration) will not

apply to those parts. Instead, those parts will be severed and proceed in a court of law,

with the remaining parts proceeding in arbitration. If any other provision of Section B is

found to be illegal or unenforceable, that provision will be severed with the remainder of

Section B remaining in full force and effect.

10. Third-Party Beneficiary. Microsoft Corporation is not a party to this agreement but is a

third-party beneficiary of your and the licensor’s agreement to resolve disputes through

informal negotiation and arbitration. If your dispute is with Microsoft, Microsoft agrees

to do everything the licensor agrees to do in Section B, and you agree to do everything

regarding Microsoft that Section B requires you to do regarding the licensor. Mail a

Notice of Dispute with Microsoft to Microsoft Corporation, ATTN: LCA

ARBITRATION, One Microsoft Way, Redmond, WA 98052-6399. You may commence

an arbitration or small claims court case against Microsoft in your county of residence or

King County, Washington.

C. CHOICE OF LAW

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The laws of the state or country where you live govern all claims and disputes under this

agreement, including breach of contact claims and claims under state consumer protection

laws, unfair competition laws, implied warranty laws, for unjust enrichment, and in tort. If

you acquired the software in any other country, the laws of that country apply. This

agreement describes certain legal rights. You may have other rights, including consumer

rights, under the laws of your state or country. You may also have rights with respect to the

party from whom you acquired the software. This agreement does not change those other

rights if the laws of your state or country do not permit it to do so.

D. ACTIVATION

1. More on How Activation Works. During activation, the software will send information

about the software and your computer to Microsoft. This information includes the

version, license version, language, and product key of the software, the Internet protocol

address of the computer, and information derived from the hardware configuration of the

computer. For more information about activation, see

microsoft.com/piracy/activation.mspx. If the licensed computer is connected to the

Internet, the software will automatically connect to Microsoft for activation. You can also

activate the software manually by Internet or telephone. In either case, Internet and

telephone service charges may apply.

2. Re-activation. Some changes to your computer components or the software may require

re-activation of the software.

3. Activation Failure. During online activation, if the licensing or activation functions of the

software are found to be counterfeit or improperly licensed, activation will fail. The

software will notify you if the installed copy of the software is improperly licensed. In

addition, you will receive reminders to obtain a properly licensed copy of the software.

4. Updates and Upgrades. You may only obtain updates or upgrades for the software from

Microsoft or authorized sources. Certain upgrades, support, and other services may be

offered only to users of genuine Microsoft software. To identify genuine Microsoft

software, see howtotell.com.

E. INTERNET-BASED FEATURES; PRIVACY

The following software features use Internet protocols, which send to Microsoft (or its

suppliers or service providers) computer information, such as your Internet protocol address,

the type of operating system, browser and name and version of the software you are using, and

the language code of the computer where you installed the software. Microsoft uses this

information to make the Internet-based features available to you, in accordance with the

Office 2013 Privacy Statement, at

r.office.microsoft.com/r/rlidOOPrivacyState15HighLight?clid=1033. Some Internet-based

features may be delivered at a later date via Microsoft’s Update service.

1. Consent for Internet-Based Services. The software features described below and in the

Office 2013 Privacy Statement connect to Microsoft or service provider computer systems

over the Internet. In some cases, you will not receive a separate notice when they connect.

In some cases, you may switch off these features or not use them. For more information

A End User License Agreements

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Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 35

about these features, see the Office 2013 Privacy Statement at

r.office.microsoft.com/r/rlidOOPrivacyState15HighLight?clid=1033. BY USING THESE

FEATURES, YOU CONSENT TO THE TRANSMISSION OF THIS INFORMATION.

Microsoft does not use the information to identify or contact you.

2. Customer Experience Improvement Program (CEIP). This software uses CEIP. CEIP

automatically sends Microsoft information about your hardware and how you use this

software. We do not use this information to identify or contact you. CEIP will also

periodically download a small file to your computer. This file helps us collect information

about problems that you have while using the software. When available, new help

information about the errors might also be automatically downloaded. To learn more

about CEIP, see microsoft.com/products/ceip/EN-US/privacypolicy.mspx.

3. Online Features and Content. Features in the software can retrieve online content from

Microsoft and provide it to you. Certain features may also permit you to search for and

access information online. Examples of these features include clip art, templates, online

training, online assistance and help, and Outlook Weather on the Calendar. If you save a

template provided by Office.com, information will be sent online to Microsoft, such as

information that identifies the template, but not any specific document you have created

using the template. This information is used to provide you with content you request and

to improve our services. You may choose not to use these online features and content. See

the Office 2013 Privacy Statement linked at the end of this agreement for more

information.

4. Cookies. If you choose to use online features in the software, such as online assistance and

help, and templates, cookies may be set. To learn how to block, control and delete

cookies, please read the cookies section of the Office 2013 Privacy Statement linked at the

end of this agreement.

5. Digital Certificates. The software uses digital certificates. These digital certificates

confirm the identity of Internet users sending X.509 standard encrypted information.

They also can be used to digitally sign files and macros to verify the integrity and origin of

the file contents. The software retrieves certificates and updates certificate revocation lists

using the Internet, when available.

6. Automatic Update. Software with Click-to-Run technology may periodically check with

Microsoft for updates and supplements to the software. If found, these updates and

supplements might be automatically downloaded and installed on your licensed

computer.

7. Use of Information. Microsoft may use the computer information, error reports, and

malware reports to improve our software and services. We may also share it with others,

such as hardware and software vendors. They may use the information to improve how

their products run with Microsoft software.

8. Misuse of Internet-Based Services. You may not use these services in any way that could

harm them or impair anyone else’s use of them. You may not use the services to try to gain

unauthorized access to any service, data, account or network by any means.

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36 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

9. Office Roaming Service. If you choose to sign into the software with your Microsoft

account, you turn on the Office Roaming Service. Turning on the Office Roaming

Service sends certain settings (including your list of Most Recently Used Documents,

your custom dictionary, and your visual themes) online to Microsoft servers, where they

are stored and downloaded to your computer the next time you sign into the service with

your Microsoft account. For more information about the Office Roaming Service, see the

full Privacy Statement found at

r.office.microsoft.com/r/rlidOOPrivacyState15HighLight?clid=1033, then clicking the

Privacy Statement link in the Important Information section at the bottom of the page.

F. ADDITIONAL LICENSING REQUIREMENTS AND/OR USE RIGHTS

1. Third-Party Programs. The software may include third-party programs that Microsoft,

not the third party, licenses to you under this agreement. Notices, if any, for the

third-party program are included for your information only.

2. Font Components. While the software is running, you may use its fonts to display and

print content. You may temporarily download the fonts to a printer or other output

device to print content, and you may embed fonts in content only as permitted by the

embedding restrictions in the fonts.

3. Media Elements. Microsoft grants you a license to copy, distribute, perform and display

media elements (images, clip art, animations, sounds, music, video clips, templates and

other forms of content) included with the software in projects and documents, except that

you may not: (i) sell, license or distribute copies of any media elements by themselves or

as a product if the primary value of the product is the media elements; (ii) grant your

customers rights to further license or distribute the media elements; (iii) license or

distribute for commercial purposes media elements that include the representation of

identifiable individuals, governments, logos, trademarks, or emblems or use these types of

images in ways that could imply an endorsement or association with your product, entity

or activity; or (iv) create obscene or scandalous works using the media elements. Other

media elements, which are accessible on Office.com or on other websites through features

of the software, are governed by the terms on those websites.

4. Language Packs and Proofing Tools. If you acquire a language pack, language interface

pack or proofing tool that offers additional language version support for the software, you

may use the additional languages included in that pack or tool. The language packs,

language interface packs and proofing tools are a part of the software and may not be used

separately.

G. GEOGRAPHIC AND EXPORT RESTRICTIONS

You must comply with all domestic and international export laws and regulations that apply

to the software, which include restrictions on destinations, end users, and end use. For further

information on export restrictions, visit microsoft.com/exporting.

H. ENTIRE AGREEMENT

A End User License Agreements

End-User License Agreement–Microsoft Office Professional Plus 2013 and TraceFinder 3.2

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 37

This agreement (together with terms accompanying any software supplements, updates, and

services that are provided by Microsoft and that you use), and the terms contained in web

links listed in this agreement, are the entire agreement for the software and any such

supplements, updates, and services (unless Microsoft provides other terms with such

supplements, updates, or services). You can review this agreement after your software is

running by going to the software Help screen and clicking on the Microsoft Software License

Terms link or going to

microsoft.com/about/legal/en/us/intellectualproperty/useterms/default.aspx. You can also

review the terms at any of the links in this agreement by typing the URLs into your browser

address bar, and you agree to do so. You agree that for each service that is governed by this

agreement and also specific terms linked in this agreement, you will read the terms for that

service before using the service. You understand that by using the service, you accept this

agreement and the linked terms. There are also informational links in this agreement. The

links containing terms that bind you are:

•r.office.microsoft.com/r/rlidOOPrivacyState15HighLight?clid=1033 (Office 2013

Privacy Statement)

I. NO HIGH RISK USE. THE PRODUCTS ARE NOT FAULT-TOLERANT AND ARE

NOT GUARANTEED TO BE ERROR FREE OR TO OPERATE UNINTERRUPTED.

YOU DO NOT HAVE THE RIGHT TO USE THE PRODUCTS IN ANY

APPLICATION OR SITUATION WHERE THE PRODUCT(S) FAILURE COULD

LEAD TO DEATH OR SERIOUS BODILY INJURY OF ANY PERSON, OR TO

SEVERE PHYSICAL OR ENVIRONMENTAL DAMAGE (“HIGH RISK USE”).

EXAMPLES OF HIGH RISK USE INCLUDE, BUT ARE NOT LIMITED TO:

AIRCRAFT OR OTHER MODES OF HUMAN MASS TRANSPORTATION,

NUCLEAR OR CHEMICAL FACILITIES, LIFE SUPPORT SYSTEMS,

IMPLANTABLE MEDICAL EQUIPMENT, MOTOR VEHICLES, OR WEAPONRY

SYSTEMS. HIGH RISK USE DOES NOT INCLUDE UTILIZATION OF PRODUCTS

FOR ADMINISTRATIVE PURPOSES, TO STORE CONFIGURATION DATA,

ENGINEERING AND/OR CONFIGURATION TOOLS, OR OTHER

NON-CONTROL APPLICATIONS, THE FAILURE OF WHICH WOULD NOT

RESULT IN DEATH, PERSONAL INJURY, OR SEVERE PHYSICAL OR

ENVIRONMENTAL DAMAGE. THESE NON-CONTROLLING APPLICATIONS

MAY COMMUNICATE WITH THE APPLICATIONS THAT PERFORM THE

CONTROL, BUT MUST NOT BE DIRECTLY OR INDIRECTLY RESPONSIBLE

FOR THE CONTROL FUNCTION. LICENSOR HAS INDEPENDENTLY

DETERMINED HOW TO USE THE SOFTWARE IN THE INTEGRATED

SOFTWARE APPLICATION OR SUITE OF APPLICATIONS THAT IT IS

LICENSING TO YOU, AND MICROSOFT HAS RELIED ON LICENSOR TO

CONDUCT SUFFICIENT TESTING TO DETERMINE THAT THE SOFTWARE IS

SUITABLE FOR SUCH USE. microsoft.com/exporting.

J. NO WARRANTIES BY MICROSOFT. YOU AGREE THAT IF YOU HAVE

RECEIVED ANY WARRANTIES WITH REGARD TO EITHER (A) THE SOFTWARE,

OR (B) THE SOFTWARE APPLICATION OR SUITE OF APPLICATIONS WITH

WHICH YOU ACQUIRED THE SOFTWARE, THEN THOSE WARRANTIES ARE

A End User License Agreements

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38 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

PROVIDED SOLELY BY THE LICENSOR AND DO NOT ORIGINATE FROM, AND

ARE NOT BINDING ON, MICROSOFT. MICROSOFT DOES NOT PROVIDE AN

IMPLIED WARRANTY OF MERCHANTABILITY OR ANY OTHER EXPRESS OR

IMPLIED WARRANTY.

K. NO LIABILITY OF MICROSOFT FOR CERTAIN DAMAGES. TO THE

MAXIMUM EXTENT PERMITTED BY APPLICABLE LAW, MICROSOFT SHALL

HAVE NO LIABILITY FOR ANY INDIRECT, SPECIAL, CONSEQUENTIAL OR

INCIDENTAL DAMAGES ARISING FROM OR IN CONNECTION WITH THE USE

OR PERFORMANCE OF THE SOFTWARE OR THE SOFTWARE APPLICATION

OR SUITE OF APPLICATIONS WITH WHICH YOU ACQUIRED THE SOFTWARE,

INCLUDING WITHOUT LIMITATION, PENALTIES IMPOSED BY

GOVERNMENT. THIS LIMITATION WILL APPLY EVEN IF ANY REMEDY FAILS

OF ITS ESSENTIAL PURPOSE. IN NO EVENT SHALL MICROSOFT BE LIABLE

FOR ANY AMOUNT IN EXCESS OF TWO HUNDRED FIFTY U.S. DOLLARS

(US$250.00).

L. FOR AUSTRALIA ONLY. References to “Limited Warranty” are references to the

express warranty provided by Microsoft. This warranty is given in addition to other

rights and remedies you may have under law, including your rights and remedies in

accordance with the statutory guarantees under the Australian Consumer Law.

If the Australian Consumer Law applies to your purchase, the following applies to you:

Our goods come with guarantees that cannot be excluded under the Australian

Consumer Law. You are entitled to a replacement or refund for a major failure and

compensation for any other reasonably foreseeable loss or damage. You are also entitled

to have the goods repaired or replaced if the goods fail to be of acceptable quality and the

failure does not amount to a major failure.

Microsoft, Outlook, SkyDrive, and Windows are registered trademarks of Microsoft

Corporation in the United States and/or other countries.

A. THE PARTIES

1. The parties to this Agreement are Thermo Finnigan LLC and the Customer. “Thermo”

and "Thermo Fisher Scientific" means Thermo Finnigan LLC, the licensor of the

TraceFinder version 3.2 software that is the subject of this Agreement (“Software”). The

"Customer" is the person or organization that orders, uses and pays the applicable license

fee, if any, for the Software.

2. In granting this license to the Customer, Thermo may also be acting on behalf of

Information Partners. "Information Partners" are entities that have licensed to Thermo

software for sublicensing or programs or code included as part of the Software. Each

Information Partner retains its right to enforce its trademarks, copyrights, patents, trade

secrets and other rights concerning the Software directly against the Customer.

END-USER LICENSE AGREEMENT – THERMO FISHER SCIENTIFIC

TRACEFINDER 3.2

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Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 39

B. LICENSE GRANT

1. Thermo grants to the Customer a non-exclusive, non-transferable license to use the

Software and any accompanying manuals and reference and instructional materials

(“Documentation”) solely for the purposes for which the Software is intended as set forth

in the Documentation and only for Customer’s internal business, scientific and research

purposes.

2. The Customer is authorized to install and use two (2) copies of the Software and

maintain one (1) uninstalled copy for backup purposes. T

3. The Software and the Documentation are and shall remain the property of Thermo or an

Information Partner as applicable and are protected by all applicable intellectual property,

copyright, and patent laws, as well as international treaties and other contractual rights.

The Software and Documentation are and shall remain the confidential and proprietary

information of Thermo and Information Partners, and Customer shall not disclose the

Software and Documentation to any third party or place such items in the public domain.

4. No title, ownership or interest in the Software or Documentation is transferred to

Customer by this Agreement or by the payment of any fee.

5. Any rights not expressly granted herein to Customer are reserved to Thermo and

Information Partners.

C. WHAT CUSTOMER MAY DO

1. Use the Software only to perform the functions for which the Software was designed as set

forth in the applicable Documentation and only in connection with Customer’s internal

business, scientific and research purposes.

D. WHAT CUSTOMER MAY NOT DO

1. Create derivative works of, decompile, reverse engineer or attempt to determine the

source code of the Software.

2. Sell, distribute or commercially exploit the Software and Documentation without the

prior written consent of Thermo.

3. Transfer, assign or sublicense the Software or Documentation without the prior written

approval of Thermo; provided, however, that Customer may transfer the Software, upon

written notification to Thermo, to an affiliate or successor in interest of Customer for

such affiliate’s or successor’s use in accordance with the terms and conditions of this

Agreement.

E. LIMITATION OF WARRANTIES AND LIABILITY

1. The Software provided under this Agreement is a tool. Its successful use and operation is

dependent on the skill of the operator, and it is not a substitute for skilled human

judgment. It is possible to obtain erroneous results by giving inappropriate instructions to

the Software.

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40 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

2. THERMO AND ITS INFORMATION PARTNERS PROVIDE THE SOFTWARE

AND DOCUMENTATION TO CUSTOMER ON AN “AS IS” BASIS AND MAKE

NO REPRESENTATIONS OR WARRANTIES OF ANY KIND WITH RESPECT

TO THE SOFTWARE AND DOCUMENTATION, INCLUDING BUT NOT

LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A

PARTICULAR PURPOSE AND NONINFRINGEMENT. THERMO DISCLAIMS

ALL WARRANTIES WITH RESPECT TO THIRD-PARTY PRODUCTS,

INCLUDING SOFTWARE PROVIDED BY INFORMATION PARTNERS.

3. THERMO AND INFORMATION PARTNERS ASSUME NO RESPONSIBILITY

FOR THE USE OF THE SOFTWARE AND DOCUMENTATION BY THE

CUSTOMER OR ANY OTHER PARTY, AND THERMO AND INFORMATION

PARTNERS SHALL NOT BE LIABLE FOR LOSS OF PROFITS, USE, BUSINESS,

REVENUES, DATA, INFORMATION OR GOODWILL OR FOR INCIDENTAL,

CONSEQUENTIAL, INDIRECT, PUNITIVE OR EXEMPLARY DAMAGES AS A

RESULT OF SUCH USE, EVEN IF THERMO AND/OR INFORMATION

PARTNERS ARE EXPRESSLY MADE AWARE OF THE POSSIBILITY THEREOF

OR ARE NEGLIGENT. Thermo cannot and does not guarantee or warrant that the

Software or files available for downloading through any Thermo download Web Site are

or will be free of infection or viruses, worms, Trojan horses or other code that manifest

contaminating or destructive properties. Customer is responsible for implementing

sufficient procedures and checkpoints to satisfy its particular requirements for accuracy of

data input and output, and for maintaining a means external to the Site for the

reconstruction of any lost data. It is solely Customer’s responsibility to evaluate the

accuracy, completeness and usefulness of all Software. Thermo does not warrant the

accuracy, currency, and completeness of Software or that the Software is error-free, will

accomplish any particular result or will operate without interruption.

4. IN NO EVENT MAY ANY ACTION BE BROUGHT AGAINST THERMO OR

INFORMATION PARTNERS ARISING OUT OF THIS AGREEMENT MORE

THAN ONE YEAR AFTER THE CLAIM OR CAUSE OF ACTION ARISES,

DETERMINED WITHOUT REGARD TO WHEN THE CUSTOMER SHALL

HAVE LEARNED OF THE ALLEGED DEFECT, INJURY, OR LOSS.

5. IN NO EVENT SHALL THE TOTAL LIABILITY OF INFORMATION PARTNERS

AND THERMO EXCEED THE LICENSE FEE PAID BY CUSTOMER FOR THE

SOFTWARE GIVING RISE TO THE CLAIM (WHETHER SUCH LIABILITY

ARISES FROM TORT, NEGLIGENCE, STRICT LIABILITY, BREACH OF

WARRANTY, BREACH OF CONTRACT OR OTHERWISE).

6. SOME JURISDICTIONS DO NOT ALLOW THE EXCLUSION OR LIMITATION

OF IMPLIED WARRANTIES OR LIABILITY FOR INCIDENTAL OR

CONSEQUENTIAL DAMAGES, SO THE ABOVE EXCLUSIONS OR

LIMITATIONS MAY NOT APPLY TO EVERY CUSTOMER WHERE

APPLICABLE.

F. APPLICABLE LAW

A End User License Agreements

End-User License Agreement–Microsoft Office Professional Plus 2013 and TraceFinder 3.2

Thermo Scientific Ion Trap Series Preinstallation Requirements Guide 41

1. This Agreement will be governed by and construed in accordance with the laws of the

Commonwealth of Massachusetts without giving effect to the principles of conflict of

laws thereof, and both parties consent to the jurisdiction of the federal and state courts

situated in the Commonwealth of Massachusetts in any action arising under this

Agreement. In the event of any legal proceeding between Thermo and Customer relating

to this Agreement, neither party may claim the right to a trial by jury, and both parties

waive any right to a trial by jury. The application of the U.N. Convention on Contracts

for the International Sale of Goods to this Agreement is hereby expressly excluded.

G. EXPORT COMPLIANCE

1. Customer acknowledges that the Software and Documentation is subject to export

controls of the U.S. Government, which may include those of the Export Administration

Regulations of the U.S. Department of Commerce. Customer agrees to comply with the

Export Administration Regulations and all other applicable laws and regulations relating

to the export, re-export, or import of the Software and Documentation.

H. ENTIRE UNDERSTANDING

1. This Agreement constitutes the entire understanding of the parties with respect to the

subject matter hereof. Without limiting the generality of the foregoing, it is expressly

agreed that the terms of any prior Customer purchase order will be subject to the terms of

this license and that any acceptance of a purchase order by Thermo will be for

acknowledgment purposes only and none of the terms set forth in the purchase order will

be binding upon Thermo. Any representation, promise, warranty, covenant or

undertaking not expressly set forth in this license shall not be deemed a part of the

Agreement or otherwise legally effective.

I. SEVERABILITY

1. If a term or condition of this Agreement is held to be invalid or unenforceable, the

remaining terms and conditions of this Agreement will remain in full force and effect.

J. AUDIT

1. Customer grants Thermo the right to audit, during regular business hours, Customer’s

use of the Software and Documentation to ensure compliance with this Agreement.

K. INDEMNIFICATION

1. Customer agrees to indemnify, defend and hold harmless Thermo and Information

Partners from and against any and all claims of third parties arising out of or related to

Customer’s use of the Software, regardless whether such claims were foreseeable by

Thermo or the Information Partners.

L. TERMINATION

1. Thermo may, in addition to its other legal rights and remedies and upon written notice to

Customer, terminate this Agreement in the event Customer breaches any term of this

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42 Ion Trap Series Preinstallation Requirements Guide Thermo Scientific

Agreement or becomes insolvent, files or has filed against it a petition in bankruptcy or

undergoes a reorganization pursuant to a petition in bankruptcy filed with respect to it.

2. Upon termination, Customer will, unless otherwise agreed to in writing by Thermo,

immediately return to Thermo the Software and Documentation, and all copies thereof,

and will erase all electronic storage of copies of the Software.

3. Termination of this Agreement will not affect any obligation or liability of Customer

arising prior to termination, and the following sections shall survive: 2b, 2c, 2d, 2.2, 3

through 9, 10b, 10c, 11 and 12.

M. FORCE MAJEURE

1. Neither Thermo nor Information Partners will be responsible for any delay or failure in

performance resulting from any cause beyond their control.

N. RESTRICTED RIGHTS APPLICABLE TO U.S. GOVERNMENT ONLY

Use, duplication or disclosure of any included database, Software or associated materials by

the U.S. Government is subject to the restricted rights applicable to commercial computer

software (under FAR 52.227019 and DFARS 252.227-7013 or parallel regulations). The

manufacturer for this purpose is Thermo Finnigan LLC, 355 River Oaks Parkway, San Jose,

CA 95134-1908 or the applicable Information Partner.

Thermo Scientific Glossary 43

G

Glossary

Numerics

μ micro (10-6)

Ω ohm

A

A ampere

ACE automatic collision energy

ac alternating current

amu atomic mass unit

ADC analog-to-digital converter

ASCII american standard code for information

interchange

B

baud rate data transmission speed in events per

second.

C

ºC degrees Celsius

CD-ROM compact disc read-only memory

CE (F. Conformité Européenne) European

conformity. Mandatory european marking for certain

product groups to indicate conformity with essential

health and safety requirements set out in european

directives.

cfm cubic feet per minute

CI chemical ionization

CID collision induced dissociation

CIP carriage and insurance paid to

cm centimeter

cc or cm3 cubic centimeter

CPU central processing unit (in a computer)

D

Da Dalton

DAC digital-to-analog converter

dc direct current

DDS data dependency scanning

DEP™ direct exposure probe

DIP direct insertion probe

DS data system

DSP digital signal processor

A B C D E F G H I JK L M N OP Q R S T U V W X Y Z

Glossary: EI

44 Glossary Thermo Scientific

E

EI electron ionization

ESD electrostatic discharge

eV electron volt

EN european conformity

F

F

f femto (10-15)

ºF degrees Fahrenheit

FCC federal communication commission

FOB free on board

ft. foot

FSE field service engineer

FTP file transfer protocol

G

G

g gram

G giga (109)

GB gigabytes 1024 MB (billion)

GC gas chromatograph

GC/MS gas chromatograph / mass spectrometer

GND electrical ground

GPIB general-purpose interface bus

GUI graphical user interface

H

HV high voltage

Hz hertz (cycles per second)

I

ICIS™ interactive chemical information system

IEC international electrotechnical commission

IEEE institute of electrical and electronics engineers

in. inch

I/O input/output

K

k kilo (103, 1000)

K Kelvin

kb kilobyte 1024 bytes (thousand)

kg kilogram

kPa kilopascal

kVA kilo volt amperes (1000 VA)

L

L liter

LAN local area network

lb pound

LED light-emitting diode

M

m meter; milli (10-3)

M mega (106)

MB megabyte or 1,024 kb (million)

M+ molecular ion

min minute

mL milliliter

mm millimeter

Glossary: MS

Thermo Scientific Glossary 45

MS scan power: MS1, mass spectrometer

m/z mass-to-charge ratio

N

n nano (10-9)

P

p pico (10-12)

Pa Pascal

PCB printed circuit board

PID proportional / integral / differential

PN part number

P/P peak-to-peak voltage

PPINICI pulsed positive ion negative ion chemical

ionization

ppm parts per million

PQD pulsed q dissociation

psig pounds per square inch, gauge

Q

q maximum excitation energy

R

RAM random access memory

RF radio frequency

RMS root mean square

ROM read-only memory

RS-232 industry standard for serial communications

S

s second

SCSI small computer system interface

SIM selected ion monitoring

SI international system of units

S/N signal to noise ratio

T

TIC total ion current

TCP/IP transmission control protocol / Internet

protocol

To r r torr

U

URL uniform resource locator

USB universal serial bus

V

V volt

V ac volts alternating current

V dc volts direct current

Glossary: V dc

46 Glossary Thermo Scientific

Thermo Scientific Ion Trap Series Preinstallation Requirments Guide 47

I

Numerics

120 V 6

120 V requirements 7

230 V 6, 8

A

Acetone 14

Ammonia 12

analytes 4

Autosampler 3–4, 7–8, 15

B

Box Dimensions 2

C

carrier gas 4, 11

CI Reagent Gas 12

CIP 17

circuits 5

compliance

FCC x

regulatory ix

WEEE xi

components 5

compressed air 12

connectors 12

cordsets 6

cryogenic coolant 13

D

delivery doors 2

detergent 14

Direct Sample Probe 3, 7–8, 12, 15

documentation survey xviii

Domestic Shipments 17

E

electromagnetic compatibility x

electrostatic discharge 16

elevators 2

EMC compliance ix

Entrance Requirements 2

Environment Requirements 15

ESD Precautions 16

exhaust port 4

F

FCC compliance x

FOB 17

fume hood 4

G

gas bottles 13

gas line filters 13

gas lines 13

gas tanks 13

gas type 12

GC 3–4, 7, 9, 11, 13, 15, 18

Glycerol 14

H

Harmonic Distortion 5

Helium 11

I

installation 18

International Shipments 17

Ion Mode Specifications 19

Isobutane 12

L

Lighting Requirements 5

Index

48 Ion Trap Series Preinstallation Requirments Guide Thermo Scientific

Index: M

M

Maximum Heat Temperatures 15

Methane 12

Methanol 14

monitor 2, 7–8, 15

MS 2–3, 7–8, 15, 18

O

Outlet Pressure 12

P

particulate matter 16

power source 5

PTV injector 13

Purity 12

R

Receiving Instructions 17

Recommended Layout 4

regulator 11–12

regulatory compliance ix

requirements xiii

RMS 5

room temperature 15

rotary-vane pump 2, 4, 7–8

S

safety standards ix

Sags 5

Solvent Specifications 14

solvents 4

Space Requirements 3

specifications xiii

Surges 5

survey link xviii

T

Technical Support office xiii

Tekmar 15

Telephone Requirements 17

testing 19

Total harmonic distortion 5

TR-5MS 18

training 19

V

venting 4

W

wall outlets 6

WEEE compliance xi

workbench

workstation layout 4

Workbench & Space Requirements 3