Introduction Python Scripting Manual V.3.7.4
User Manual:
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Page Count: 78
- 1. Contents
- 2. Introduction
- 3. How to use Python in CompuCell3D
- 4. SteppableBasePy class
- 5. Adding Steppable to Simulation using Twedit++
- 6. Passing information between steppables
- 7. Creating and Deleting Cells. Cell Type Names
- 8. Calculating distances in CC3D simulations.
- 9. Looping over select cell types. Finding cell in the inventory.
- 10. Writing data files in the simulation output directory.
- 11. Adding plots to the simulation
- 12. Custom Cell Attributes in Python
- 13. Adding and managing extra fields for visualization purposes
- 14. Automatic Tracking of Cells’ Attributes
- 15. Field Secretion
- 16. Chemotaxis on a cell-by-cell basis
- 17. Steering – changing CC3DML parameters on-the-fly.
- 18. Replacing CC3DML with equivalent Python syntax
- 19. Cell Motility. Applying force to cells.
- 20. Setting cell membrane fluctuation ona cell-by-cell basis
- 21. Checking if two cell objects point to different cells
- 22. Modifying attributes of CellG object
- 23. Controling steppable call frequency. Stoppping simulation on demand or increasing maximum Monte Carlo Step.
- 24. Building a wall (destroying sounds too cliché).
- 25. Resizing the lattice
- 26. Changing number of Worknodes
- 27. Iterating over cell neighbors
- 28. Accesing concentration fields managed of PDE solvers
- 29. Mitosis
- 30. Dividing Clusters (aka compartmental cells)
- 31. Changing cluster id of a cell.
- 32. SBML Solver
- 33. Parameter Scans
- 34. Implementing Energy Functions in Python
- 35. Appendix A
- 36. Appendix B