Sleuth2 Manual
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Package ‘Sleuth2’ January 24, 2019 Title Data Sets from Ramsey and Schafer's ``Statistical Sleuth (2nd Ed)'' Version 2.0-5 Date 2019-01-24 Author Original by F.L. Ramsey and D.W. Schafer; modifications by Daniel W. Schafer, Jeannie Sifneos and Berwin A. Turlach; vignettes contributed by Nicholas Horton, Kate Aloisio and Ruobing Zhang, with corrections by Randall Pruim Description Data sets from Ramsey, F.L. and Schafer, D.W. (2002), ``The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed)'', Duxbury. Maintainer Berwin A TurlachLazyData yes Depends R (>= 3.5.0) Suggests lattice, knitr, MASS, agricolae, car, gmodels, leaps, mosaic VignetteBuilder knitr License GPL (>= 2) URL http://r-forge.r-project.org/projects/sleuth2/ R topics documented: Sleuth2-package . case0101 . . . . case0102 . . . . case0201 . . . . case0202 . . . . case0301 . . . . case0302 . . . . case0401 . . . . case0402 . . . . case0501 . . . . case0502 . . . . case0601 . . . . case0602 . . . . case0701 . . . . case0702 . . . . case0801 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 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case2101 case2102 case2201 case2202 ex0112 . . ex0116 . . ex0211 . . ex0221 . . ex0222 . . ex0223 . . ex0321 . . ex0323 . . ex0327 . . ex0328 . . ex0331 . . ex0332 . . ex0333 . . ex0428 . . ex0429 . . ex0430 . . ex0431 . . ex0432 . . ex0518 . . ex0523 . . ex0524 . . ex0621 . . ex0622 . . ex0723 . . ex0724 . . ex0726 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 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. ex0920 . ex1014 . ex1026 . ex1027 . ex1028 . ex1029 . ex1115 . ex1120 . ex1122 . ex1123 . ex1124 . ex1217 . ex1220 . ex1221 . ex1222 . ex1317 . ex1319 . ex1320 . ex1414 . ex1415 . ex1417 . ex1509 . ex1512 . ex1513 . ex1514 . ex1515 . ex1605 . ex1611 . ex1612 . ex1613 . ex1614 . ex1615 . ex1708 . ex1713 . ex1714 . ex1914 . ex1916 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 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ex1918 . . . . . ex1919 . . . . . ex2011 . . . . . ex2012 . . . . . ex2015 . . . . . ex2016 . . . . . ex2017 . . . . . ex2018 . . . . . ex2115 . . . . . ex2116 . . . . . ex2117 . . . . . ex2118 . . . . . ex2119 . . . . . ex22.20 . . . . ex2216 . . . . . ex2222 . . . . . ex2223 . . . . . ex2224 . . . . . ex2225 . . . . . ex2414 . . . . . Sleuth2Manual . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Index Sleuth2-package . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 101 102 103 103 104 105 106 107 108 109 110 111 112 113 114 114 115 116 117 118 118 119 120 The R Sleuth2 package Description Data sets from Ramsey and Schafer’s "Statistical Sleuth (2nd ed)" Details This package contains a variety of datasets. For a complete list, use library(help="Sleuth2") or Sleuth2Manual(). Author(s) Original by F.L. Ramsey and D.W. Schafer Modifications by Daniel W Schafer, Jeannie Sifneos and Berwin A Turlach Maintainer: Berwin A Turlach case0101 case0101 5 Motivation and Creativity Description Data from an experiment concerning the effects of intrinsic and extrinsic motivation on creativity. Subjects with considerable experience in creative writing were randomly assigned to one of two treatment groups. Usage case0101 Format A data frame with 47 observations on the following 2 variables. Score creativity score Treatment factor denoting the treatment group Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Amabile, T. (1985). Motivation and Creativity: Effects of Motivational Orientation on Creative Writers, Journal of Personality and Social Psychology 48(2): 393–399. Examples str(case0101) boxplot(Score~Treatment, case0101) case0102 Sex Discrimination in Employment Description The data are the beginning salaries for all 32 male and all 61 female skilled, entry–level clerical employees hired by a bank between 1969 and 1977. Usage case0102 6 case0201 Format A data frame with 93 observations on the following 2 variables. Salary starting salaries (in US$) Sex sex of the clerical employee Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Roberts, H.V. (1979). Harris Trust and Savings Bank: An Analysis of Employee Compensation, Report 7946, Center for Mathematical Studies in Business and Economics, University of Chicago Graduate School of Business. See Also case1202 Examples str(case0102) boxplot(Salary~Sex, case0102) case0201 Bumpus’s Data on Natural Selection (Humerus) Description As evidence in support of natural selection, Bumpus presented measurements on house sparrows brought to the Anatomical Laboratory of Brown University after an uncommonly severe winter storm. Some of these birds had survived and some had perished. Bumpus asked whether those that perished did so because they lacked physical characteristics enabling them to withstand the intensity of that particular instance of selective elimination. The data are on the humerus (arm bone) lengths for the 24 adult male sparrows that perished and for the 35 adult males that survived. Usage case0201 Format A data frame with 59 observations on the following 2 variables. Humerus Humerus length of adult male sparrows (in inches) Status factor variable indicating whether the sparrow perished or survived in a winter storm Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. case0202 7 See Also ex0221, ex2016 Examples str(case0201) with(subset(case0201, Status=="Perished"), stem(Humerus, scale=10)) with(subset(case0201, Status=="Survived"), stem(Humerus)) case0202 Anatomical Abnormalities Associated with Schizophrenia Description Are any physiological indicators associated with schizophrenia? In a 1990 article, researchers reported the results of a study that controlled for genetic and socioeconomic differences by examining 15 pairs of monozygotic twins, where one of the twins was schizophrenic and the other was not. The researchers used magnetic resonance imaging to measure the volumes (in cm$^3$) of several regions and subregions of the twins’ brains. Usage case0202 Format A data frame with 15 observations on the following 2 variables. Unaffect volume of left hippocampus of unaffected twin (in cm3 ) Affected volume of left hippocampus of affected twin (in cm3 ) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Suddath, R.L., Christison, G.W., Torrey, E.F., Casanova, M.F. and Weinberger, D.R. (1990). Anatomical Abnormalities in the Brains of Monozygotic Twins Discordant for Schizophrenia, New England Journal of Medicine 322(12): 789–794. Examples str(case0202) with(case0202, stem(Unaffect-Affected, scale=2)) 8 case0301 case0301 Cloud Seeding Description Does dropping silver iodide onto clouds increase the amount of rainfall they produce? In a randomized experiment, researchers measured the volume of rainfall in a target area (in acre-feet) on 26 suitable days in which the clouds were seeded and on 26 suitble days in which the clouds were not seeded. Usage case0301 Format A data frame with 52 observations on the following 2 variables. Rainfall the volume of rainfall in the target area (in acre-feet) Treatment a factor with levels "Unseeded" and "Seeded" indicating whether the clouds were unseeded or seeded. Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Simpson, J., Olsen, A., and Eden, J. (1975). A Bayesian Analysis of a Multiplicative Treatment Effect in Weather Modification. Technometrics 17: 161–166. Examples str(case0301) boxplot(Rainfall ~ Treatment, case0301) boxplot(log(Rainfall) ~ Treatment, case0301) library(lattice) bwplot(Treatment ~ log(Rainfall), case0301) bwplot(log(Rainfall) ~ Treatment, case0301) case0302 case0302 9 Agent Orange Description In 1987, researchers measured the TCDD concentration in blood samples from 646 U.S. veterans of the Vietnam War and from 97 U.S. veterans who did not serve in Vietnam. TCDD is a carcinogenic dioxin in the herbicide called Agent Orange, which was used to clear jungle hiding areas by the U.S. military in the Vietnam War between 1962 and 1970. Usage data(case0302) Format A data frame with 743 observations on the following 2 variables. Dioxin the concentration of TCDD, in parts per trillion Veteran factor variable with two levels, "Vietnam" and "Other", to indicate the type of veteran Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Centers for Disease Control Veterans Health Studies: Serum 2,3,7,8-Tetraclorodibenzo-p-dioxin Levels in U.S. Army Vietnam-era Veterans. Journal of the American Medical Association 260: 1249–1254. Examples str(case0302) boxplot(Dioxin ~ Veteran, case0302) t.test(Dioxin ~ Veteran, case0302) ## To examine results with largest dioxin omitted t.test(Dioxin ~ Veteran, case0302, subset=(Dioxin < 40)) case0401 Space Shuttle Description The number of space shuttle O-ring incidents for 4 space shuttle launches when the air temperatures was below 65 degrees F and for 20 space shuttle launches when the air temperature was above 65 degrees F. 10 case0402 Usage case0401 Format A data frame with 24 observations on the following 2 variables. Incidents the number of O-ring incidents Launch factor variable with two levels—"Cool" and "Warm" Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Feynman, R.P. (1988). What do You Care What Other People Think? W. W. Norton. See Also ex2011, ex2223 Examples str(case0401) stem(subset(case0401, Launch=="Cool", Incidents, drop=TRUE)) stem(subset(case0401, Launch=="Warm", Incidents, drop=TRUE)) case0402 Cognitive Load Description Educational researchers randomly assigned 28 ninth-year students in Australia to receive coordinate geometry training in one of two ways: a conventional way and a modified way. After the training, the students were asked to solve a coordinate geometry problem. The time to complete the problem was recorded, but five students in the “conventional” group did not complete the solution in the five minute alloted time. Usage case0402 Format A data frame with 28 observations on the following 3 variables. Time the time (in seconds) that the student worked on the problem Treatmt factor variable with two levels—"Modified" and "Conventional" Censor 1 if the individual did not complete the problem in 5 minutes, 0 if they did case0501 11 Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Sweller, J., Chandler, P., Tierney, P. and Cooper, M. (1990). Cognitive Load as a Factor in the Structuring of Technical Material, Journal of Experimental Psychology General 119(2): 176–192. Examples str(case0402) stem(subset(case0402, Treatmt=="Conventional", Time, drop=TRUE)) stem(subset(case0402, Treatmt=="Modified", Time, drop=TRUE)) wilcox.test(Time ~ Treatmt, case0402) case0501 Diet Restriction and Longevity Description Female mice were randomly assigned to six treatment groups to investigate whether restricting dietary intake increases life expectancy. Diet treatments were: 1. "NP"—mice ate unlimited amount of nonpurified, standard diet 2. "N/N85"—mice fed normally before and after weaning. After weaning, ration was controlled at 85 kcal/wk 3. "N/R50"—normal diet before weaning and reduced calorie diet (50 kcal/wk) after weaning 4. "R/R50"—reduced calorie diet of 50 kcal/wk both before and after weaning 5. "N/R50 lopro"—normal diet before weaning, restricted diet (50 kcal/wk) after weaning and dietary protein content decreased with advancing age 6. "N/R40"—normal diet before weaning and reduced diet (40 Kcal/wk) after weaning. Usage case0501 Format A data frame with 349 observations on the following 2 variables. Lifetime the lifetime of the mice (in months) Diet factor variable with six levels—"NP", "N/N85", "lopro", "N/R50", "R/R50" and "N/R40" Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. 12 case0502 References Weindruch, R., Walford, R.L., Fligiel, S. and Guthrie D. (1986). The Retardation of Aging in Mice by Dietary Restriction: Longevity, Cancer, Immunity and Lifetime Energy Intake, Journal of Nutrition 116(4):641–54. Examples str(case0501) boxplot(Lifetime~Diet, width=c(rep(.8,6)), data=case0501, xlab="Diet", ylab="Lifetime in months") summary(subset(case0501, Diet=="NP", Lifetime)) case0502 The Spock Conspiracy Trial Description In 1968, Dr. Benjamin Spock was tried in Boston on charges of conspiring to violate the Selective Service Act by encouraging young men to resist being drafted into military service for Vietnam. The defence in the case challenged the method of jury selection claiming that women were underrepresented. Boston juries are selected in three stages. First 300 names are selected at random from the City Directory, then a venire of 30 or more jurors is selected from the initial list of 300 and finally, an actual jury is selected from the venire in a nonrandom process allowing each side to exclude certain jurors. There was one woman on the venire and no women on the final list. The defence argued that the judge in the trial had a history of venires in which women were systematically underrepresented and compared the judge’s recent venires with the venires of six other Boston area district judges. Usage case0502 Format A data frame with 46 observations on the following 2 variables. Percent is the percent of women on the venire’s of the Spock trial judge and 6 other Boston area judges Judge a factor with levels "Spock's", "A", "B", "C", "D", "E" and "F" Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Zeisel, H. and Kalven, H. Jr. (1972). Parking Tickets and Missing Women: Statistics and the Law in Tanur, J.M. et al. (eds.) Statistics: A Guide to the Unknown, Holden-Day. case0601 13 Examples str(case0502) boxplot(Percent~Judge, data=case0502, xlab="Judge",ylab="Percentage of Women") percent.spocks <- subset(case0502, Judge == "Spock's", Percent) percent.others <- subset(case0502, Judge != "Spock's", Percent) t.test( percent.spocks,percent.others) summary(aov(Percent~Judge, case0502, subset = Judge != "Spock's")) #as in Display 5.10 summary(aov(Percent~Judge, case0502)) case0601 Discrimination Against the Handicapped Description Study explores how physical handicaps affect people’s perception of employment qualifications. Researchers prepared 5 videotaped job interviews using actors with a script designed to reflect an interview with an applicant of average qualifications. The 5 tapes differed only in that the applicant appeared with a different handicap in each one. Seventy undergraduate students were randomly assigned to view the tapes and rate the qualification of the applicant on a 0-10 point scale. Usage case0601 Format A data frame with 70 observations on the following 2 variables. Score is the score each student gave to the applicant Handicap is a factor variable with 5 levels—"None", "Amputee", "Crutches", "Hearing" and "Wheelchair" Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Cesare, S.J., Tannenbaum, R.J. and Dalessio, A. (1990). Interviewers’ Decisions Related to Applicant Handicap Type and Rater Empathy, Human Performance 3(3): 157–171. Examples str(case0601) boxplot(Score~Handicap, data=case0601, ylab="Score") aov.handicap <- aov(Score ~ Handicap, case0601) summary(aov.handicap) TukeyHSD(aov.handicap) 14 case0602 #Calculate confidence interval for linear combination #(wheelchair+crutches)/2 - (amputee+hearing)/2 as in Display 6.4 mean.handicaps <- with(case0601, tapply(Score, Handicap, mean)) var.handicaps <- with(case0601, tapply(Score, Handicap, var)) n <- 14 s.pooled <- sqrt(sum((n-1)*var.handicaps)/sum((n-1)*5)) ## either cr.wh <- mean.handicaps["Wheelchair"] + mean.handicaps["Crutches"] am.he <- mean.handicaps["Amputee"] + mean.handicaps["Hearing"] g <- cr.wh/2 - am.he/2 ## or contr <- c(0, -1, 1, -1, 1)/2 g <- sum(contr * mean.handicaps) se.g <- s.pooled * sqrt(sum(contr^2)/n) t.65 <- qt(.975, 65) ## ci g + c(-1,1) * t.65 * se.g case0602 Mate Preference of Platyfish Description Do female Platyfish prefer male Platyfish with yellow swordtails? A.L. Basolo proposed and tested a selection model in which females have a pre-existing bias for a male trait even before the males possess it. Six pairs of males were surgically given artificial, plastic swordtails—one pair received a bright yellow sword, the other a transparent sword. Females were given the opportunity to engage in courtship activity with either of the males. Of the total time spent by each female engaged in courtship during a 20 minute observation period, the percentages of time spent with the yellowsword male were recorded. Usage case0602 Format A data frame with 84 observations on the following 3 variables. Proportion The proportion of courtship time spent by 84 females with the yellow-sword males Pair Factor variable with 6 levels—"Pair 1", "Pair 2", "Pair 3", "Pair 4", "Pair 5" and "Pair 6" Length Body size of the males Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. case0701 15 References Basolo, A.L. (1990). Female Preference Predates the Evolution of the Sword in Swordtail Fish, Science 250: 808–810. Examples str(case0602) boxplot(Proportion~Pair, case0602, ylab="Proportion") #as in Display 6.5 summary(aov(Proportion~Pair, case0602)) n.fish <- with(case0602, tapply(Proportion, Pair, length)) av.fish <- with(case0602, tapply(Proportion, Pair, mean)) sd.fish <- with(case0602, tapply(Proportion, Pair, sd)) male.body.size <- with(case0602, tapply(Length, Pair, unique)) mean.body <- mean(male.body.size) table.fish <- data.frame(n.fish, round(av.fish*100,2), round(sd.fish*100,2), male.body.size, 2*(male.body.size-mean.body)) names(table.fish) <- c("n", "average", "sd", "male.body.size", "coefficient") s.pooled <- with(table.fish, round(sqrt(sum(sd^2*(n-1))/sum(n-1)),2)) g <- with(table.fish, sum(average*coefficient)) se.g <- with(table.fish, round(s.pooled*sqrt(sum(coefficient^2/n)),2)) g/se.g case0701 The Big Bang Description Hubble’s initial data on 24 nebulae outside the Milky Way. Usage case0701 Format A data frame with 24 observations on the following 2 variables. Velocity recession velocity (in kilometres per second) Distance distance from earth (in magaparsec) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Hubble, E. (1929). A Relation Between Distance and Radial Velocity Among Extragalactic Nebulae, Proceedings of the National Academy of Science 15: 168–173. 16 case0702 See Also ex0727 Examples str(case0701) plot(case0701) case0702 Meat Processing and pH Description A certain kind of meat processing may begin once the pH in postmortem muscle of a steer carcass has decreased sufficiently. To estimate the timepoint at which pH has dropped sufficiently, 10 steer carcasses were assigned to be measured for pH at one of five times after slaughter. Usage case0702 Format A data frame with 10 observations on the following 2 variables. Time time after slaughter (hours) pH pH level in postmortem muscle Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Schwenke, J.R. and Milliken, G.A. (1991). On the Calibration Problem Extended to Nonlinear Models, Biometrics 47(2): 563–574. See Also ex0816 Examples str(case0702) plot(case0702) case0801 case0801 17 Island Area and Number of Species Description The data are the numbers of reptile and amphibian species and the island areas for seven islands in the West Indies. Usage case0801 Format A data frame with 7 observations on the following 2 variables. Area area of island (in square miles) Species number of reptile and amphibian species on island Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. Examples str(case0801) plot(case0801) case0802 Breakdown Times for Insulating Fluid under different Voltage Description In an industrial laboratory, under uniform conditions, batches of electrical insulating fluid were subjected to constant voltages until the insulating property of the fluids broke down. Seven different voltage levels were studied and the measured reponses were the times until breakdown. Usage case0802 Format A data frame with 76 observations on the following 3 variables. Time times until breakdown (in minutes) Voltage voltage applied (in kV) Group factor variable (group number) 18 case0901 Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. Examples str(case0802) plot(log(Time)~Voltage, case0802) case0901 Effects of Light on Meadowfoam Flowering Description Meadowfoam is a small plant found growing in moist meadows of the US Pacific Northwest. Researchers reported the results from one study in a series designed to find out how to elevate meadowfoam production to a profitable crop. In a controlled growth chamber, they focused on the effects of two light–related factors: light intensity and the timeing of the onset of the ligth treatment. Usage case0901 Format A data frame with 24 observations on the following 3 variables. Flowers average number of flowers per meadowfoam plant Time time light intensity regiments started Intens light intensity (in µmol/m2 /sec) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. Examples str(case0901) plot(Flowers~Intens, case0901, pch= ifelse(Time=="Early", 19, 21)) case0902 case0902 19 Why Do Some Mammals Have Large Brains for Their Size? Description The data are the average values of brain weight, body weight, gestation lengths (length of pregnancy) and litter size for 96 species of mammals. Usage case0902 Format A data frame with 96 observations on the following 5 variables. Species species Brain average brain weight (in grams) Body average body weight (in kilograms) Gestation gestation period (in days) Litter average litter size Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. See Also case0902 Examples str(case0902) pairs(log(Brain)~log(Body)+log(Litter)+Gestation, case0902) case1001 Galileo’s Data on the Motion of Falling Bodies Description In 1609 Galileo proved mathematically that the trajectory of a body falling with a horizontal velocity component is a parabola. His search for an experimental setting in which horizontal motion was not affected appreciably (to study inertia) let him to construct a certain apparatus. The data comes from one of his experiments. Usage case1001 20 case1002 Format A data frame with 7 observations on the following 2 variables. Distance horizontal distances (in punti) Height initial height (in punti) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. Examples str(case1001) plot(Distance ~ Height, case1001) case1002 The Energy Costs of Echolocation by Bats Description The data are on in–flight energy expenditure and body mass from 20 energy studies on three types of flying vertebrates: echolocating bats, non–echolocating bats and non–echolocating birds. Usage case1002 Format A data frame with 20 observations on the following 4 variables. Species species Mass mass (in grams) Type a factor with 3 levels indicating the type of flying vertebrate Energy in–flight energy expenditure (in W) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Speakman, J.R. and Racey, P.A. (1991). No cost of Echolocation for Bats in Flight, Nature 350: 421–423. case1101 21 Examples str(case1002) plot(log(Energy)~log(Mass), case1002, pch = ifelse(Type=="echolocating bats", 19, ifelse(Type=="non-echolocating birds", 21, 24))) plot(Energy~Mass, case1002, log="xy", xlab = "Body Mass (g) (log scale)", ylab = "Energy Expenditure (W) (log scale)", pch = ifelse(Type=="echolocating bats", 19, ifelse(Type=="non-echolocating birds", 21, 24))) legend(7, 50, pch=c(24, 21, 19), c("Non-echolocating bats", "Non-echolocating birds","Echolocating bats")) library(lattice) yticks <- c(1,2,5,10,20,50) xticks <- c(10,20,50,100,200,500) xyplot(Energy ~ Mass, case1002, groups=Type, scales = list(log=TRUE, y=list(at=yticks), x=list(at=xticks)), ylab = "Energy Expenditure (W) (log scale)", xlab = "Body Mass (g) (log scale)", auto.key = list(x = 0.2, y = 0.9, corner = c(0, 1), border = TRUE)) case1101 Alcohol Metabolism in Men and Women Description These data were collected on 18 women and 14 men to investigate a certain theory on why women exhibit a lower tolerance for alcohol and develop alcohol–related liver disease more readily than men. Usage case1101 Format A data frame with 32 observations on the following 5 variables. Subject subject number in the study Metabol first–pass metabolism of alcohol in the stomach (in mmol/liter-hour) Gastric gastric alcohol dehydrogenase activity in the stomach (in µmol/min/g of tissue) Sex sex of the subject Alcohol whether the subject is alcoholic or not Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. 22 case1102 Examples str(case1101) plot(Metabol~Gastric, case1101, pch=ifelse(Sex=="Female", 19, 21), col=ifelse(Alcohol=="Alcoholic", "red", "green")) legend(1,12, pch=c(19,21,19,21), col=c("green","green", "red", "red"), c("Non-alcoholic Females", "Non-alcoholic Males", "Alcoholic Females", "Alcoholic Males")) library(lattice) xyplot(Metabol~Gastric|Sex*Alcohol, case1101) xyplot(Metabol~Gastric, case1101, groups=Sex:Alcohol, auto.key=list(x=0.2, y=0.8, corner=c(0,0), border=TRUE)) case1102 The Blood–Brain Barrier Description The human brain is protected from bacteria and toxins, which course through the blood–stream, by a single layer of cells called the blood–brain barrier. These data come from an experiment (on rats, which process a similar barrier) to study a method of disrupting the barrier by infusing a solution of concentrated sugars. Usage case1102 Format A data frame with 34 observations on the following 9 variables. Brain Brain tumor count (per gm) Liver Liver count (per gm) Time Sacrifice time (in hours) Treat Treatment received Days Days post inoculation Sex Sex of the rat Weight Initial weight (in grams) Loss Weight loss (in grams) Tumor Tumor weight (in 10−4 grams) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. case1201 23 Examples str(case1102) plot(Brain/Liver ~ Time, case1102, log="xy", pch=ifelse(Treat=="BD", 19,21)) legend(10,0.1, pch=c(19,21), c("Saline control", "Barrier disruption")) case1201 State Average SAT Scores Description Data on the average SAT scores for US states in 1982 and possible associated factors. Usage case1201 Format A data frame with 50 observations on the following 8 variables. State US state SAT state averages of the total SAT (verbal + quantitative) scores Takers the percentage of the total eligible students (high school seniors) in the state who took the exam Income the median income of families of test–takers (in hundreds of dollars) Years the average number of years that the test–takers had formal studies in social sciences, natural sciences and humanities Public the percentage of the test–takers who attended public secondary schools Expend the total state expenditure on secondary schools (in hundreds of dollars per student) Rank the median percentile ranking of the test–takers within their secondary school classes Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. Examples str(case1201) pairs(SAT~Rank+Years+Income+Public+Expend, case1201) 24 case1202 case1202 Sex discrimination in Employment Description Data on employees from one job category (skilled, entry–level clerical) of a bank that was sued for sex discrimination. The data are on 32 male and 61 female employees, hired between 1965 and 1975. Usage case1202 Format A data frame with 93 observations on the following 7 variables. Bsal Annual salary at time of hire Sal77 Salary as of March 1975 Sex Sex of employee Senior Seniority (months since first hired) Age Age of employee (in months) Educ Education (in years) Exper Work experience prior to employment with the bank (months) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Roberts, H.V. (1979). Harris Trust and Savings Bank: An Analysis of Employee Compensation, Report 7946, Center for Mathematical Studies in Business and Economics, University of Chicago Graduate School of Business. See Also case0102 Examples str(case1202) pairs(Sal77~Bsal+Senior+Age+Exper, case1202) case1301 case1301 25 Seaweed Grazers Description To study the influence of ocean grazers on regeneration rates of seaweed in the intertidal zone, a researcher scraped rock plots free of seaweed and observed the degree of regeneration when certain types of seaweed-grazing animals were denied access. The grazers were limpets (L), small fishes (f) and large fishes (F). Each plot received one of six treatments named by which grazers were allowed access. In addition, the researcher applied the treatments in eight blocks of 12 plots each. Within each block she randomly assigned treatments to plots. The blocks covered a wide range of tidal conditions. Usage case1301 Format A data frame with 96 observations on the following 3 variables. Cover percent of regenerated seaweed cover Block a factor with levels "B1", "B2", "B3", "B4", "B5", "B6", "B7" and "B8" Treat a factor indicating treatment, with levels "C", "f", "fF", "L", "Lf" and "LfF" Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Olson, A. (1993). Evolutionary and Ecological Interactions Affecting Seaweeds, Ph.D. Thesis. Oregon State University. Examples str(case1301) # full two-way model with interactions fitfull <- aov(Cover ~ Treat*Block, case1301) # Residual plot indicates a transformation might help plot(fitfull) # Log of seaweed "regeneration ratio" y <- with(case1301, log(Cover/(100-Cover))) # Full two-way model with interactions fitfull <- aov(y~Treat*Block, case1301) # No problems indicated by residual plot plot(fitfull) # Note that interactions are not statistically significant anova(fitfull) # Additive model (no interactions) 26 case1302 fitadditive <- aov(y ~ Treat + Block, case1301) # Make lmp 65" Make a factor with levels "Ford" and "Other" Other cause of accident was other than tire-related Tire cause of accident was tire-related Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. See Also ex2018 Examples str(ex1919) ex2011 Space Shuttle Description This data frame contains the launch temperatures (degrees Fahrenheit) and an indicator of O-ring failures for 24 space shuttle launches prior to the space shuttle Challenger disaster of January 28, 1986. Usage ex2011 104 ex2012 Format A data frame with 24 observations on the following 2 variables. Temp Launch temperature (in degrees Fahrenheit) Failure Indicator of O-ring failure Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. See Also case0401, ex2223 Examples str(ex2011) ex2012 Muscular Dystrophy Description Duchenne Muscular Dystrophy (DMD) is a genetically transmitted disease, passed from a mother to her children. Boys with the disease usually die at a young age; but affected girls usually do not suffer symptoms, may unknowingly carry the disease and may pass it to their offspring. It is believed that about 1 in 3,300 women are DMD carriers. A woman might suspect she is a carrier when a related male child develops the disease. Doctors must rely on some kind of test to detect the presence of the disease. This data frame contains data on two enzymes in the blood, creatine kinase (CK) and hemopexin (H) for 38 known DMD carriers and 82 women who are not carriers. It is desired to use these data to obtain an equation for indicating whether a women is a likely carrier. Usage ex2012 Format A data frame with 120 observations on the following 3 variables. Group Indicator whether the woman has DMD ("Case") or not ("Control") CK Creatine kinase reading H Hemopexin reading Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. ex2015 105 References Andrews, D.F. and Herzberg, A.M. (1985). Data: A Collection of Problems From Many Fields For The Student And Research Worker, Springer-Verlag, New York. Examples str(ex2012) ex2015 Spotted Owl Habitat Description A study examined the association between nesting locations of the Northern Spotted Owl and availability of mature forests. Wildlife biologists identified 30 nest sites. The researchers selected 30 other sites at random coordinates in the same forest. On the basis of aerial photographs, the percentage of mature forest (older than 80 years) was measured in various rings around each of the 60 sites. Usage ex2015 Format A data frame with 60 observations on the following 8 variables. Site Site, a factor with levels "Random" and "Nest" PctRing1 Percentage of mature forest in ring with outer radius 0.91 km PctRing2 Percentage of mature forest in ring with outer radius 1.18 km PctRing3 Percentage of mature forest in ring with outer radius 1.40 km PctRing4 Percentage of mature forest in ring with outer radius 1.60 km PctRing5 Percentage of mature forest in ring with outer radius 1.77 km PctRing6 Percentage of mature forest in ring with outer radius 2.41 km PctRing7 Percentage of mature forest in ring with outer radius 3.38 km Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Ripple W.J., Johnson, D.H., Thershey, K.T. and Meslow E.C. (1991). Old–growth and Mature Forests Near Spotted Owl Nests in Western Oregon, Journal of Wildlife Management 55(2): 316– 318. Examples str(ex2015) 106 ex2016 ex2016 Bumpus Natural Selection Data Description Hermon Bumpus analysed various characteristics of some house sparrows that were found on the ground after a severe winter storm in 1898. Some of the sparrows survived and some perished. This data set contains the survival status, age, the length from tip of beak to tip of tail (in mm), the alar extent (length from tip to tip of the extended wings, in mm), the weight in grams, the length of the head in mm, the length of the humerus (arm bone, in inches), the length of the femur (thigh bones, in inches), the length of the tibio–tarsus (leg bone, in inches), the breadth of the skull in inches and the length of the sternum in inches. Usage ex2016 Format A data frame with 87 observations on the following 11 variables. Status Survival status, factor with levels "Perished" and "Survived" AG Age, factor with levels "adult" and "juvenile" TL total length (in mm) AE alar extent (in mm) WT weight (in grams) BH length of beak and head (in mm) HL length of humerus (in inches) FL length of femur (in inches) TT length of tibio–tarsus (in inches) SK width of skull (in inches) KL length of keel of sternum (in inches) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. See Also case0201, ex0221 Examples str(ex2016) ex2017 ex2017 107 Catholic stance Description The Catholic church has explicitly opposed authoritarian rule in some (but not all) Latin American countries. Although such action could be explained as a desire to counter repression or to increase the quality of life of its parishioners, A.J. Gill supplies evidence that the underlying reason may be competition from evangelical Protestant denominations. He compiled the data given in this data frame. Usage ex2017 Format A data frame with 12 observations on the following 5 variables. Stance Catholic church stance, factor with levels "Pro" and "Anti" Country Latin American country PQLI Physical Quality of Life Index in the mid-1970s; Average of live expectancy at age 1, infant mortality and literacy at age 15+. Repress Average civil rights score for the period of authoritarian rule until 1979 Compete Percentage increase of competitive religious groups during the period 1900–1970 Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Gill, A.J. (1994). Rendering unto Caesar? Religious Competition and Catholic Strategy in Latin America, 1962–1979, American Journal of Political Science 38(2): 403–425. Examples str(ex2017) 108 ex2018 ex2018 Fatal Car Accidents Involving Tire Failures on Ford Explorers Description This data frame contains data on 1995 and later model compact sports utility vehicles involved in fatal accidents in the United States between 1995 and 1999, excluding those that were struck by another car and excluding accidents that, according to police reports, involved alcohol. Usage ex2018 Format A data frame with 2321 observations on the following 4 variables. Make Type of sports utility vehicle, factor with levels "Other" and "Ford" Vehicle.age Vehicle age (in years); surrogate for age of tires Passengers Number of passengers Cause Cause of fatal accident, factor with levels "Not_Tire" and "Tire" Details The Ford Explorer is a popular sports utility vehicle made in the United States and sold throughout the world. Early in its production concern arose over a potential accident risk associated with tires of the prescribed size when the vehicle was carrying heavy loads, but the risk was thought to be acceptable if a low tire pressure was recommended. The problem was apparently exacerbated by a particular type of Firestone tire that was overly prone to separation, especially in warm temperatures. This type of tire was a common one used on Explorers in model years 1995 and later. By the end of 1999 more than 30 lawsuits had been filed over accidents that were thought to be associated with this problem. U.S. federal data on fatal car accidents were analysed at that time, showing that the odds of a fatal accident being associated with tire failure were three times as great for Explorers as for other sports utility vehicles. Additional data from 1999 and additional variables may be used to further explore the odds ratio. It is of interest to see whether the odds that a fatal accident is tire-related depend on whether the vehicle is a Ford, after accounting for age of the car and number of passengers. Since the Ford tire problem may be due to the load carried, there is some interest in seeing whether the odds associated with a Ford depend on the number of passengers. Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. See Also ex1919 Examples str(ex2018) ex2115 ex2115 109 Belief Accessibility Description The study the effect of context questions prior to target questions, researchers conducted a poll involving 1,054 subjects selected randomly from the Chicago phone directory. To include possibly unlisted phones, selected numbers were randomly altered in the last position. This data frame contains the responses to one of the questions asked concerning continuing U.S. aid to the Nicaraguan Contra rebels. Eight different versions of the interview were given, representing all possible combinations of three factors at each of two levels. The experimental factors were Context, Mode and Level. Context refers to the type of context questions preceding the question about Nicaraguan aid. Some subjects received a context question about Vietnam, designed to elicit reticence about having the U.S. become involved in another foreign war in a third–world country. The other context question was about Cuba, designed to elicit anti–communist sentiments. Mode refers to whether the target question immediately followed the context question or whether there were other questions scattered in between. Level refers to two versions of the context question. In the "high" level the question was worded to elicit a higher level of agreement than in the "low" level wording. Usage ex2115 Format A data frame with 8 observations on the following 5 variables. Context Factor referring to the context of the question preceding the target question about U.S. aid to the Nicaraguan Contra rebels Mode Factor with levels "not" and "scattered", "scattered" is used if the target question was not asked directly after the context question Level Factor with levels "low" and "high", refers to the wording of the question M Number of people interviewed Percent Percentage in favour of Contra aid Details Increasingly, politicians look to public opinion surveys to shape their public stances. Does this represent the ultimate in democracy? Or are seemingly scientific polls being rigged by the manner of questioning? Psychologists believe that opinions—expressed as answers to questions—are usually generated at the time the question is asked. Answers are based on a quick sampling of relevant beliefs held by the subject, rather than a systematic canvas of all such beliefs. Furthermore, this sampling of beliefs tends to overrepresent whatever beliefs happen to be most accessible at the time the question is asked. This aspect of delivering opinions can be abused by the pollster. Here, for example, is one sequence of questions: (1) “Do you believe the Bill of Rights protects personal freedom?” 110 ex2116 (2) “Are you in favor of a ban on handguns?” Here is another: (1) “Do you think something should be done to reduce violent crime?” (2) “Are you in favor of a ban on handguns?” The proportion of yes answers to question 2 may be quite different depending on which question 1 is asked first. Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Tourangeau, R., Rasinski, K.A., Bradburn, N. and D’Andrade, R. (1989). Belief Accessibility and Context Effects in Attitude Measurement, Journal of Experimental Social Psychology 25: 401–421. Examples str(ex2115) ex2116 Aflatoxicol and Liver Tumors in Trout Description An experiment at the Marine/Freshwater Biomedical Sciences Center at Oregon State University investigated the carcinogenic effects of aflatoxicol, a metabolite of Aflatoxin B1, which is a toxic by-product produced by a mold that infects cottonseed meal, peanuts and grains. Twenty tanks of rainbow trout embryos were exposed to one of five doses of Aflatoxicol for one hour. The data represent the numbers of fish in each tank and the numbers of these that had liver tumours after one year. Usage ex2116 Format A data frame with 20 observations on the following 3 variables. Dose Dose (in ppm) Tumor Number of trout with liver tumours Total Number of trout in tank Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. ex2117 111 Examples str(ex2116) ex2117 Effect of Stress During Conception on Odds of a Male Birth Description The probability of a male birth in humans is about .51. It has previously been noticed that lower proportions of male births are observed when offspring is conceived at times of exposure to smog, floods or earthquakes. Danish researchers hypothesised that sources of stress associated with severe life events may also have some bearing on the sex ratio. To investigate this theory they obtained the sexes of all 3,072 children who were born in Denmark between 1 January 1980 and 31 December 1992 to women who experienced the following kind of severe life events in the year of the birth or the year prior to the birth: death or admission to hospital for cancer or heart attack of their partner or of their other children. They also obtained sexes on a sample of 20,337 births to mothers who did not experience these life stress episodes. This data frame contains the data that were collected. Noticed that for one group the exposure is listed as taking place during the first trimester of pregnancy. The rationale for this is that the stress associated with the cancer or heart attack of a family member may well have started before the recorded time of death or hospital admission. Usage ex2117 Format A data frame with 5 observations on the following 4 variables. Group Indicator for groups to which mothers belong Time Indicator for time at which severe life event occurred Number Number of births PctBoys Percentage of boys born Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Hansen, D., Møller, H. and Olsen, J. (1999). Severe Periconceptional Life Events and the Sex Ratio in Offspring: Follow Up Study based on Five National Registers, British Medical Journal 319(7209): 548–549. Examples str(ex2117) 112 ex2118 ex2118 HIV and Circumcision Description Researchers in Kenya identified a cohort of more that 1,000 prostitutes who were known to be a major reservoir of sexually transmitted diseases in 1985. It was determined that more than 85% of them were infected with human immunodeficiency virus (HIV) in February, 1986. The researchers identified men who acquired a sexually-transmitted disease from this group of women after the men sought treatment at a free clinic. The data frame contains data on the subset of those men who did not test positive for HIV on their first visit and who agreed to participate in the study. The men are categorised according to whether they later tested positive for HIV during the study period, whether they had one or multiple sexual contacts with the prostitutes and whether they were circumcised. Usage ex2118 Format A data frame with 4 observations on the following 5 variables. Contact Whether men had single or multiple contact with prostitutes Circumcised Whether the men are circumcised, factor with levels "no" and "yes" HIV Number of men that tested positive for HIV Number Number of men NoHIV Number of men that did not test positive for HIV (should be Number-HIV) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Cameron, D.W., D’Costa, L.J., Maitha, G.M., Cheang, M., Piot, P., Simonsen, J.N., Ronald, A.R., Gakinya, M.N., Ndinya-Achola, J.O., Brunham, R.C. and Plummer, F. A. (1989). Female to Male Transmission of Human Immunodeficiency Virus Type I: Risk Factors for Seroconversion in Men, The Lancet 334(8660): 403–407. Examples str(ex2118) ex2119 ex2119 113 Meta–Analysis of Breast Cancer and Lactation Studies Description This data frame gives the results of 10 separate case–control studies on the association of breast cancer and whether a woman had breast–fed children. Usage ex2119 Format A data frame with 20 observations on the following 4 variables. Study Factor indicating the study from which data was taken Lactate Whether women had breast–fed children (lactated) Cancer Number of women with breast cancer NoCancer Number of women without breast cancer Details Meta–analysis refers to the analysis of analyses. When the main results of studies can be cast into 2×2 tables of counts, it is natural to combine individual odds ratios with a logistic regression model that includes a factor to account for different odds from the different studies. In addition, the odds ratio itself might differ slightly among studies because of different effects on different populations or different research techniques. One approach for dealing with this is to suppose an underlying common odds ratio and to model between–study variability as extra–binomial variation. Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Data gathered from various sources by Karolyn Kolassa as part of a Master’s project, Oregon State University. Examples str(ex2119) 114 ex2216 ex22.20 Cancer Death of Atomic Bomb Survivors Description The data in this data frame are the number of cancer deaths among survivors of the atomic bombs dropped on Japan during World War II, categorised by time (years) after the bomb that death occurred and the amount of radiation exposure that the survivors received from the blast (Data from D.A. Pierce, personal communication.) Also listed in each cell is the person-years at risk, in 100s. This is the sum total of all years spent by all persons in the category. Usage ex22.20 Format A data frame with 42 observations on the following 4 variables. Exposure Estimated exposure to radiation (in rads) Years Years after exposure, factor with 7 levels Deaths Number of cancer deaths Risk Person-years at risk (in 100s) Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. Examples str(ex22.20) ex2216 Murder–Suicides by Deliberate Plane Crash Description Some sociologist suspect that highly publicised suicides may trigger additional suicides. In one investigation of this hypothesis, D.P. Phillips collected information about 17 airplane crashes that were known (because of notes left behind) to be murder–suicides. For each of these crashes, Phillips reported an index of the news coverage (circulation of nine newspapers devoting space to the crash multiplied by length of coverage) and the number of multiple-fatality plane crashes during the week following the publicised crash. This data frame contains the collected data. Usage ex2216 ex2222 115 Format A data frame with 17 observations on the following 2 variables. Index Index for the amount of newspaper coverage given the murder–suicide Crashes Multiple-fatality crashes in the week following a murder–suicide by plane crash Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Phillips, D.P. (1978). Airplane Accident Fatalities Increase Just After Newspaper Stories About Murder and Suicide, Science 201: 748–750. Examples str(ex2216) ex2222 Emulating Jane Austen’s Writing Style Description When she died in 1817, the English novelist Jane Austen had not yet finished the novel Sanditon, but she did leave notes on how she intended to conclude the book. The novel was completed by a ghost writer, who attempted to emulate Austen’s style. In 1978, a researcher reported counts of some words found in chapters of books written by Austen and in chapters written by the emulator. These data are given in this data frame. Usage ex2222 Format A data frame with 24 observations on the following 3 variables. Count Number of occurrences of a word in various chapters of books written by Jane Austen and the ghost writer Book Title of books used Word Words used Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. 116 ex2223 References Morton, A.Q. (1978). Literary Detection: How to Prove Authorship and Fraud in Literature and Documents, Charles Scribner’s Sons, New York. Examples str(ex2222) ex2223 Space Shuttle O-Ring Failures Description On January 27, 1986, the night before the space shuttle Challenger exploded, an engineer recommended to the National Aeronautics and Space Administration (NASA) that the shuttle not be launched in the cold weather. The forecasted temperature for the Challenger launch was 31 degrees Fahrenheit—the coldest launch ever. After an intense 3-hour telephone conference, officials decided to proceed with the launch. This data frame contains the launch temperatures and the number of O-ring problems in 24 shuttle launches prior to the Challenger. Usage ex2223 Format A data frame with 24 observations on the following 2 variables. Temp Launch temperatures (in degrees Fahrenheit) Incident Numbers of O-ring incidents Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. See Also case0401, ex2011 Examples str(ex2223) ex2224 ex2224 117 Valve Failure in Nuclear Reactors Description This data frame contains data on characteristics and numbers of failures observed in valve types from one pressurised water reactor. Usage ex2224 Format A data frame with 90 observations on the following 7 variables. System System, factor with 5 levels Operator Operator type, factor with 4 levels Valve Valve type, factor with 6 levels Size Head size, factor with 3 levels (less than 2 inches, 2–10 inches and 10–30 inches) Mode Operation mode, factor with 2 levels Failures Number of failures observed Time Lengths of observation time Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Moore, L.M. and Beckman, R.J. (1988). Appropriate One-Sided Tolerance Bounds on the Number of Failures using Poisson Regression, Technometrics 30: 283–290. Examples str(ex2224) 118 ex2414 ex2225 Body Size and Reproductive Success in a Population of Male Bullfrogs Description As an example of field observation in evidence of theories of sexual selection, S.J. Arnold and M.J. Wade presented the following data set on size and number of mates observed in 38 bullfrogs. Usage ex2225 Format A data frame with 38 observations on the following 2 variables. Bodysize Body size (in mm) Mates Number of mates Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Arnold, S.J. and Wade, M.J. (1984). On the Measurement of Natural and Sexual Selection: Aplications, Evolution 38: 720–734. Examples str(ex2225) ex2414 Amphibian Crisis and UV-B Description Data frame contains the percentage of unsuccessful hatching from enclosures containing 150 eggs each in a study to investigate whether UV-B is responsible for low hatch rates. Usage ex2414 Sleuth2Manual 119 Format A data frame with 71 observations on the following 4 variables. Percent percentage of frog eggs failing to hatch Treat factor variable with levels "NoFilter", "UV-BTransmitting" and "UV-BBlocking" Location factor variable with levels "ThreeCreeks", "SparksLake", "SmallLake" and "LostLake" Phtolyas Photolyase activity Source Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. References Blaustein, A.R., Hoffman, P.D., Hokit, D.G., Kiesecker, J.M., Walls, S.C. and Hays, J.B. (1994). UV Repair and Resistance to Solar UV-B in Amphibian Eggs: A Link to Population Declines? Proceedings of the National Academy of Science, USA 91: 1791–1795. Examples str(ex2414) Sleuth2Manual Manual of the R Sleuth2 package Description If the option “pdfviewer” is set, this command will display the PDF version of the help pages. Usage Sleuth2Manual() Author(s) Berwin A Turlach References Ramsey, F.L. and Schafer, D.W. (2002). The Statistical Sleuth: A Course in Methods of Data Analysis (2nd ed), Duxbury. Examples ## Not run: Sleuth2Manual() Index ex0116, 43 ex0211, 44 ex0221, 44 ex0222, 45 ex0223, 46 ex0321, 46 ex0323, 47 ex0327, 48 ex0328, 49 ex0331, 49 ex0332, 50 ex0333, 51 ex0428, 51 ex0429, 52 ex0430, 53 ex0431, 53 ex0432, 54 ex0518, 55 ex0523, 55 ex0524, 56 ex0621, 57 ex0622, 57 ex0723, 59 ex0724, 60 ex0726, 61 ex0727, 61 ex0728, 62 ex0729, 63 ex0730, 63 ex0816, 64 ex0817, 65 ex0818, 66 ex0820, 66 ex0822, 67 ex0823, 68 ex0824, 69 ex0825, 69 ex0914, 70 ex0915, 71 ex0918, 71 ex0920, 72 ex1014, 73 ex1026, 74 ∗Topic datasets case0101, 5 case0102, 5 case0201, 6 case0202, 7 case0301, 8 case0302, 9 case0401, 9 case0402, 10 case0501, 11 case0502, 12 case0601, 13 case0602, 14 case0701, 15 case0702, 16 case0801, 17 case0802, 17 case0901, 18 case0902, 19 case1001, 19 case1002, 20 case1101, 21 case1102, 22 case1201, 23 case1202, 24 case1301, 25 case1302, 26 case1401, 27 case1402, 28 case1501, 29 case1502, 30 case1601, 31 case1602, 32 case1701, 33 case1702, 34 case1902, 35 case2001, 37 case2002, 38 case2101, 39 case2102, 40 case2201, 41 case2202, 41 ex0112, 42 120 INDEX ex1027, 74 ex1028, 75 ex1029, 76 ex1115, 77 ex1120, 77 ex1122, 78 ex1123, 79 ex1124, 80 ex1217, 80 ex1220, 82 ex1221, 83 ex1222, 84 ex1317, 85 ex1319, 85 ex1320, 86 ex1414, 87 ex1415, 88 ex1417, 89 ex1509, 89 ex1512, 90 ex1513, 91 ex1514, 91 ex1515, 92 ex1605, 93 ex1611, 94 ex1612, 94 ex1613, 95 ex1614, 96 ex1615, 96 ex1708, 97 ex1713, 98 ex1714, 99 ex1914, 100 ex1916, 100 ex1917, 101 ex1918, 102 ex1919, 103 ex2011, 103 ex2012, 104 ex2015, 105 ex2016, 106 ex2017, 107 ex2018, 108 ex2115, 109 ex2116, 110 ex2117, 111 ex2118, 112 ex2119, 113 ex22.20, 114 ex2216, 114 ex2222, 115 ex2223, 116 121 ex2224, 117 ex2225, 118 ex2414, 118 ∗Topic documentation Sleuth2Manual, 119 ∗Topic package Sleuth2-package, 4 case0101, 5 case0102, 5, 24 case0201, 6, 45, 106 case0202, 7 case0301, 8 case0302, 9 case0401, 9, 104, 116 case0402, 10 case0501, 11 case0502, 12 case0601, 13 case0602, 14 case0701, 15, 61, 62 case0702, 16, 64, 65 case0801, 17 case0802, 17 case0901, 18 case0902, 19, 19, 51 case1001, 19 case1002, 20 case1101, 21 case1102, 22 case1201, 23 case1202, 6, 24 case1301, 25 case1302, 26 case1401, 27 case1402, 28 case1501, 29 case1502, 30 case1601, 31 case1602, 32 case1701, 33 case1702, 34 case1902, 35 case2001, 37, 102 case2002, 38 case2101, 39 case2102, 40 case2201, 41 case2202, 41 ex0112, 42 ex0116, 43 ex0211, 44 122 ex0221, 7, 44, 106 ex0222, 45 ex0223, 46 ex0321, 46 ex0323, 47 ex0327, 48 ex0328, 49 ex0331, 49 ex0332, 50 ex0333, 51 ex0428, 51 ex0429, 52 ex0430, 53 ex0431, 53 ex0432, 54 ex0518, 55 ex0523, 55, 78 ex0524, 56 ex0621, 57 ex0622, 57 ex0723, 59 ex0724, 60 ex0726, 61 ex0727, 16, 61 ex0728, 62 ex0729, 63 ex0730, 63 ex0816, 16, 64 ex0817, 65 ex0818, 66 ex0820, 66, 77 ex0822, 67 ex0823, 68 ex0824, 69 ex0825, 69, 84 ex0914, 70 ex0915, 71 ex0918, 71 ex0920, 72 ex1014, 73 ex1026, 74 ex1027, 74 ex1028, 75 ex1029, 76 ex1115, 67, 77 ex1120, 56, 77 ex1122, 78 ex1123, 79, 80, 81 ex1124, 80 ex1217, 79, 80 ex1220, 82 ex1221, 83 INDEX ex1222, 70, 84 ex1317, 85 ex1319, 85, 93 ex1320, 86 ex1414, 87, 88 ex1415, 87, 88 ex1417, 89 ex1509, 89 ex1512, 90 ex1513, 91 ex1514, 91 ex1515, 92 ex1605, 86, 93 ex1611, 94 ex1612, 94 ex1613, 95 ex1614, 96 ex1615, 96 ex1708, 97 ex1713, 98 ex1714, 99 ex1914, 100 ex1916, 100 ex1917, 101 ex1918, 37, 102 ex1919, 103, 108 ex2011, 10, 103, 116 ex2012, 104 ex2015, 105 ex2016, 7, 45, 106 ex2017, 107 ex2018, 103, 108 ex2115, 109 ex2116, 110 ex2117, 111 ex2118, 112 ex2119, 113 ex22.20, 114 ex2216, 114 ex2222, 115 ex2223, 10, 104, 116 ex2224, 117 ex2225, 118 ex2414, 118 Sleuth2 (Sleuth2-package), 4 Sleuth2-package, 4 Sleuth2Manual, 119
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