User Manual
UserManual
User Manual:
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Page Count: 370 [warning: Documents this large are best viewed by clicking the View PDF Link!]
- 1 Introduction to Kepler
- 2 Installing and Running Kepler
- 3 Scientific Workflows
- 4 Working with Existing Scientific Workflows
- 5 Building Workflows with Existing Actors
- 6 Working with Data Sets
- 6.1 Data Actors
- 6.2 Using Tabular Data Sets with Metadata
- 6.3 Using Tabular Data without Metadata
- 6.4 Accessing Data Access Protocol (DAP) Sources
- 6.5 Accessing Data from DataTurbine Servers
- 6.6 Using FTP
- 6.7 Using Data Stored in Relational Databases
- 6.8 Using Spatial and Image Data
- 6.9 Using Gene and Protein Sequence Data
- 7 Using Remote Computing Resources: The Cluster, Grid, and Web Services
- 8 Mathematical, Data Analysis, and Visualization Packages
- 8.1 Expressions and the Expression Actor
- 8.2 Statistical Computing: Kepler and R
- 8.3 Statistical Computing: MATLAB
- 8.4 Image Manipulation: ImageJ
- 8.4.1 Intro to ImageJ and the ImageJ Actor
- 8.4.1.1 Rescaling ImagesOnce an image has been opened by ImageJ, you can use the ImageJ tools and menu options to process and save the image as desired. To rescale an image, for example, select Scale from the drop-down Image menu in the ImageJ toolbar...
- 8.4.1.2 Clipping Images
- 8.4.1.3 Adjusting Image Color and Brightness
- 8.4.1.4 Selecting a Color Palette for ASC Grid Images
- 8.4.2 The IJMacro Actor
- 8.4.1 Intro to ImageJ and the ImageJ Actor
- 8.5 Spatial Data: Geographic Information Systems (GIS)
- 9 Domain Specific Workflows
- Appendix A: Creating New Actors
- Appendix B: Modules
- Appendix C: Using R in Kepler
- C.1 Installing R
- C.2 A Brief Overview of R
- C.3 The RExpression Actor
- C.4 Handling Data
- C.4.1 Inputting Data
- C.4.1.1 EML (Ecological Metadata Language) Data Sets
- C.4.1.1.1 Example One: Selecting and Using Columns of Data (Column Vectors)
- C.4.1.1.2 Example Two: Selecting and Using an Entire Data Set (Column-Based Records)
- C.4.1.1.3 Example Three: Selecting and Using a Cached Dataset (read.table function)
- C.4.1.1.4 Example Four: Using Data Sequences
- C.4.1.1.5 Example Five: Using Ports Configured as Multiports
- C.4.1.2 Non-EML Data Sets
- C.4.1.1 EML (Ecological Metadata Language) Data Sets
- C.4.2 Outputting Data
- C.4.1 Inputting Data
- C.5 Example R Scripts and Functions
- Glossary