Manual

• Introduction
• Getting help
• Hands on
• Input data
  • VCF data format
  • Frequency spectrum file format
  • SNP data format
• Specifying scheme
• Specifying a model
  • Dynamics of population size change
  • Specifying structure of the model
    • Initial structure
    • Final structure
  • Specifying model in details
• Several repeats and parallel computing
• Output
  • Stdout and log file
  • Model representation
  • Output directory content
  • Generated code of models
• Plotting model
  • Time units on model's plot
  • Plotting after GADMA finished
• Usefull options
  • Time for generation
  • [language=Python, showstringspaces=False]@Theta0@
    • Estimating [language=Python, showstringspaces=False]@Theta0@
    • Changing [language=Python, showstringspaces=False]@Theta0@
  • Examples of [language=Python, showstringspaces=False]@Theta0@ and time for generation
  • Relative to NA parameters
  • Disable migrations
  • Upper bound for time split
  • Resume launch
    • Only models
• Extra parameters file
• Units
• Decreasing number of model's parameters
• Dependencies
• Installation
  • ai
  • moments
  • Pillow
  • GADMA
    • Verifying installation
• Appendices
• Example of full parameters file
• Example of generated code