Manual
User Manual:
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Page Count: 24
- CaSpER-package
- assignStates
- AverageReference
- calcROC
- calculateLOHShiftsForEachSegment
- casper
- CenterSmooth
- ControlNormalize
- CreateCasperObject
- extractEvents
- extractLargeScaleEvents
- extractMUAndCooccurence
- extractSegmentSummary
- gene.matrix
- generateAnnotation
- generateEnrichmentSummary
- generateLargeScaleEvents
- generateParam
- getDiffExprGenes
- goEnrichmentBP
- lohCallMedianFilter
- lohCallMedianFilterByChr
- mergeScalesAndGenerateFinalEventSummary
- PerformMedianFilter
- PerformMedianFilterByChr
- PerformSegmentationWithHMM
- plotBAFAllSamples
- plotBAFInSeperatePages
- plotBAFOneSample
- plotGEAllSamples
- plotGEAndBAFOneSample
- plotGEAndGT
- plotHeatmap
- plotLargeScaleEvent
- plotLargeScaleEvent2
- plotMUAndCooccurence
- plotSCellCNVTree
- plotSingleCellLargeScaleEventHeatmap
- ProcessData
- readBAFExtractOutput
- runCaSpER
- splitByOverlap
- Index