Supplementary File 2 JME AV7.1 239 2009 9258 MOESM4 ESM

User Manual: AV7.1

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Av7-1 TTGTGAAGCCAAGAAGGAAACATCAACAAAGAAAACAGTCAAATTTTGATTCAA 54
Av7-2 ****************************************************** 54
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 GTAAGTTTGATGGATGTCATTTCTTCTTACGATTTTATTTAAAGAATATATACT 108
Av7-2 ****************************************************-* 107
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 GTATTTATACTCATTATTATATCATGATTCCCATCAAACCGACCCTTTTCCTTT 162
Av7-2 *********-******************************************** 160
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 CGAAGCAACAGGCGGGTTAGGACTGTACTAAACCCTCCTGAGTTATAATTATAA 216
Av7-2 ****************************************************** 214
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 AATTAAGAGATTTTATTTCTGTTTGTTTTCCTACAATCTAATCAAACCAAACAC 270
Av7-2 ****************************************************** 268
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 ATCAGGAGTGACCAAGAGCGACTTTTGTTTATCAGTATGTTCTTTTCTTTATTT 324
Av7-2 *****************************************-************ 321
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 CCACGCTTACCCTCAAGGGCTGGGTATGTCCACAGAACAGAACTTCTCCACTAC 378
Av7-2 ****************************************************** 375
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 GGGTAGCACTAGCACTTTTTTATCACTAAAGGAGCATTTTCAATGAATAAGCGA 432
Av7-2 ****************************************************A* 429
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 AATATCTTTATGATGTCACCATTTTACTGTTGGCCATCTAGAATGGCATCTCTC 486
Av7-2 ****************************************************** 483
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 TCTGGACGTGTCTTTTGTAAAAAAAAATAAAAAAATTTAGCCGCATGCGTCTAC 540
Av7-2 ****************************************************** 537
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
Av7-1 TTTTTGTAATCTGTTAAATACACAAAAAATGGTTCATACATTCTTTTTTAACAG 594
Av7-2 ****************************-************************* 591
Av7-3 ------------------------------------------------------
Av10 ------------------------------------------------------
[M] M N R L L V F L M L G A/- A F
Av7-1 AAAGCTACAGTGATGAACCGTCTTTTGGTCTTTCTGATGCTCGGGGCAGCTTTT 648
Av7-2 ****************************************************** 645
Av7-3 ---------A**************C********************---*****C 42
Av10 ---------A**************C********************---*****C 42
M L V V S A N D A Y G
Av7-1 ATGCTTGTCGTTTCAGCCAATGATGCTTATGGCGGTAAGATTCTAAATGGGGACA 703
Av7-2 ******************************************************* 700
Av7-3 *******************************************G*********** 97
Av10 *******************************************G*********** 97
Av7-1 TAGAGAGAGTAGAAGAGAGGGAGAGAGAGGGAGTTTGAGAGA------------ 744
Av7-2 *********************************AG*TT****------------ 741
Av7-3 *********************************AGA******----AATTGAGT 146
Av10 *********************************AGA******GAGAAATTGAGT 150
Av7-1 --------------GAGAGAGGCAAGTTGTGTACTCACAAATATGTGCACAATT 784
Av7-2 ------------GA*******************TC*-***************** 782
Av7-3 TAGGGAGATTGAGA********************C*-***************** 199
Av10 TAGGGAGATTGAGA********************C*-***************** 203
Av7-1 GTTCGTCGCTATATCGGATCTTTATCGGATAATTCATGCTGAAATTAATGCCAG 838
Av7-2 ************************************G*********-------- 828
Av7-3 ************************************G*********GT***--- 250
Av10 ************************************G*********GT***--- 254
Av7-1 TAATAGATGGATACAAAGCTATCTTGACCAGAAATGTGGAACACAACTCAACTC 892
Av7-2 ------------------------------------------------------ 828
Av7-3 ------*C**G**A*GCAAC*CT**T*GATT*T**AA*A**G***CTA*T**-- 296
Av10 ------*C**G**A*GCAAC*CT**T*GATT*T**AA*A**G***CTA*T**-- 300
Av7-1 ATGAATAATGTTACGATTCTCTTGTTAAAATTCTTTTTTCTGAGCAAACTTTTT 946
Av7-2 ------------------------------------------------------ 828
Av7-3 ------------------------------------------------------ 296
Av10 ------------------------------------------------------ 300
Av7 S1D (part 1)
Av7-1 CATGTTCAGTTGGTTAGTGTGCGTCCTTCGTAGATGAAGGCCCTCGGTTCGACT 1000
Av7-2 ------------------------------------------------------ 828
Av7-3 ------------------------------------------------------ 296
Av10 ------------------------------------------------------ 300
Av7-1 CCCAGGATCCACAAATCTATCTGCTTTGACTTCTCTTTTTCCGTGTAGCTACAG 1054
Av7-2 ------------------------------------------------------ 828
Av7-3 -----------A*GT*G****C**GCGTGTC*A*T**CC*T*T**C*TAC***A 339
Av10 -----------A*GT*G****C**GCGTGTC*T*T**CC*T*T**C*TAC***A 343
Av7-1 CTTAAATAACTTTGTAAGGAGCACTGATGGTTTGAGGGGGTCAGTAAAGTGCTC 1108
Av7-2 ------------------------------------------------------ 828
Av7-3 G***C*ATT****C*G--------------------------------*CC*** 361
Av10 G***C*ATT****C*G--------------------------------*CC*** 365
Av7-1 ACCTTCGATTGC-TTAAACTATTTGGTAATCAACCTCTCCTTTACCTATGCCTT 1161
Av7-2 ------------------------------------------------------ 828
Av7-3 G********CATG***C*****-------------------------------- 383
Av10 G********CATG***C*****-------------------------------- 387
Av7-1 TTTTTTCAGACGAGCCGGCATTTAAAGACCTCAAACGAGGTATCGTATAAAGTG 1215
Av7-2 ------------------------------------------------------ 828
Av7-3 --------------------------***TCT*GGA*G**AGGGG*GCCCC**A 411
Av10 --------------------------***TCT*GGA*G**AGGGG*GCCCC**A 415
Av7-1 TTTAAATTATCGAATTTTAGTGGAAACTGACAATGTGAAAATGATATATTCAAA 1269
Av7-2 ------------------------------------------------------ 828
Av7-3 C*A*C*A*G*-----------------------**CA*****ATCC*G*C**C* 442
Av10 C*A*C*A*G*-----------------------**CA*****ATCC*G*C**C* 446
Av7-1 GAACAAAT-CCATTAATATAATGTCATTCAGGGGAAGAAAACTGAAGGA-ATTA 1321
Av7-2 -----***G***G*****G*T----------**ATG**C****C*T*A*T*A*G 867
Av7-3 A**TT***G***G*****G*T----------**ATG**C****C*T*A*T*A*G 486
Av10 A**TT***G***G*****G*T----------**ATG**C****C*T*A*T*A*G 490
Av7-1 TTAAACTCCTACCTTTAATGTTTTCTTTCTGCCATTTTCATCATTTGTTTTTTT 1375
Av7-2 ***CGA*G**CTTG****AA**C*T***T-CTG*GC*----------AGC**** 910
Av7-3 ***CGA*TG*CTTG****AA**C*T***T*CTG*GC*----------AGC**** 530
Av10 ***CGA*TG*CTTG****AA**C*T***T*CTG*GC*----------AGC**** 534
Av7-1 TTATGTTCAGTTGGTTAGTATGCGGCCCT-GTAGATGAAGGCCCTCGGTTCGAC 1428
Av7-2 *C*****************G*******T*C************************ 964
Av7-3 GC*****************G*******T*C*A*************A******** 584
Av10 GC*****************G*******T*C*A*************A******** 588
Av7-1 TCCC---AGGATGCACAAATCTGCTTTGACTTCTCTTTGTC------------- 1466
Av7-2 ****---*****C*****G**********************CGTGTAGCTACAG 1015
Av7-3 ****TGC***T*T*****G**********************CGTGTAGCTACAG 638
Av10 ****TGC***T*T*****G**********************CGTGTAGCTACAG 642
Av7-1 -TTAAATACCTTTGTAAAAGAGCACTGATGGTTTGAGGGGGTCAGTAAAGTGCT 1519
Av7-2 C************A***G-************A*****C*T************** 1068
Av7-3 C*******A********G-*********************************** 691
Av10 C*******A********G-*********************************** 695
Av7-1 CACCT-------CGATTGCTTTTAAACTATTTGGTAATCAACCTACTCCTTTAC 1566
Av7-2 *****TAAAATT*********--*********************-********* 1119
Av7-3 *****TAAAATT*********--*********************-********* 742
Av10 *****TAAAATT*********--*********************-********* 746
(D) E P A F K D L N Q
Av7-1 CTATGCCTTTTTTTTTC-AGACGAGCCGGCATTTAAAGACCTCAACCAAGGTAT 1619
Av7-2 ***************C*C************************************ 1173
Av7-3 ***************CA--*********************************** 794
Av10 *****************--*********************************** 798
Av7-1 CGTATAAAGTGTTTAAG-TTATCGAATTTTAGTGGAAACTGACAATGCGAAAAT 1672
Av7-2 *****************-**************************T**T*****A 1226
Av7-3 *****************C*********************************G** 848
Av10 ****************************************************** 852
Av7-1 AATATATTC-----TTGCAATAAAGTCACTTTGGTGTTTCCAAAGAACAAATCC 1721
Av7-2 *********ATGTC**************************************** 1280
Av7-3 *********-----**************************************** 897
Av10 *********-----**************************************** 901
Av7-1 ATTAATATGATGTCATTCAGGAGAAGAAAACTGAAGGAATTATTAAACTCCTG- 1774
Av7-2 ********A**********************************A***G****AG 1334
Av7-3 *****************************************************- 950
Av10 *****************************************************- 954
Av7-1 -CTTTAATGTTTTCTTTCTGCCATTTTCATCATTTGTT-GTTTTTTTTATACTT 1826
Av7-2 CT*******************T*****T**********TA************** 1388
Av7-3 -*************************************-*************** 1002
Av10 -**************C**********************-*************** 1006
(G)D E S L G K
Av7-1 GCATTTTAGGTGACGAAAGTTTGGGAAAAAGTAAGTATTCATGCAAAGCATGCC 1880
Av7-2 *****************************************************T 1442
Av7-3 ****************************************************** 1056
Av10 ****************************************************** 1060
Av7 S1D (part 2) Av7 S2D (part 1)
Av7 S2D (part 2)
Av7-1 ATTCGTTGCCTTAATTAATATTTTTCAATATTTT-AGTGAGAA-GGTAAATGTG 1932
Av7-2 **********************************T********A********** 1496
Av7-3 ******-***************************-********-********** 1107
Av10 **********************************-********-********** 1112
Av7-1 ATGTAATCGAAGGACTCAAGGACTTTGATGGATGTGACACGTCAGTTTGAGAAG 1986
Av7-2 ****************************************************** 1550
Av7-3 ****************************************************** 1161
Av10 ****************************************************** 1166
Av7-1 TGTGAGAAGAGTAGCCGTCTTGTGTGTTAATGCCACGGCGTGCTTGAAAACGGG 2040
Av7-2 ******G***********G*******C*******G******************* 1604
Av7-3 ************G*****G*********************************** 1215
Av10 ******************G*********************************** 1220
Av7-1 GGGGAGATAGGGGATGTAGCCAAGTACCGGGGCGTCAGTGAAGGGCATCGGATT 2094
Av7-2 **--************************************************** 1656
Av7-3 **--************************************************** 1267
Av10 **--************************************************** 1272
Av7-1 AGTCGTAAGATTAGCTACAGTTTTTTCATGCGCAGGTTGCATTTTTAAAAGCTG 2148
Av7-2 ***************-----------------------------------*TA* 1675
Av7-3 ************************************GC*************T** 1321
Av10 ************************************GC*************T** 1326
Av7-1 ACGTACTTCAGCAACCATTCACACACTGTGGACCAGGCACTGCTCCATCTTCAA 2202
Av7-2 ***************************************************G** 1729
Av7-3 ****************************************************** 1375
Av10 ****************************************************** 1380
Av7-1 GCATTTGGGGAAGTGTATGGATCACTGATGCTAATTGTTTATTCAGTAAACTTG 2256
Av7-2 *************C******************G**********A********** 1783
Av7-3 ****************************************************** 1429
Av10 ****************************************************** 1434
Av7-1 CCAGATTTGCATACACAGGAAACGTTTTCAATTTCCTAAATGGGAACTTTGGGA 2310
Av7-2 ***************************************C************** 1837
Av7-3 ****************************************************** 1483
Av10 ****************************************************** 1488
Av7-1 AATTATTGGGAAATCACAACCCAAATTTGGGAAAATCTTTTTGAAATGAAATTT 2364
Av7-2 ******************************************T*********** 1891
Av7-3 ****************************************************** 1540
Av10 ****************************************************** 1545
Av7 L2D
Av7-1 TTTCCAAACCTTGGATTTTGTTGCATTTTCCCAATCATGGGAAGTTATGTGAAT 2418
Av7-2 ****************************************************** 1945
Av7-3 ***********C****G**************************T********** 1591
Av10 ***********C**G*G**************************T********** 1596
Av7-1 TTCCCATAAAAGTCCCA--GAAATTACCCAAAACTTTGCCAGAATGGGGATCAT 2470
Av7-2 *****************--*********************************** 1997
Av7-3 *******T*******T*CT**************T******************** 1645
Av10 *******T*******T*CT**************T******************** 1650
Av7-1 GAAAAATTTCCTGTGATAGTTTGCCTCATTGGTATTATTGAGAGA----GTCAT 2520
Av7-2 *********************************************----***** 2047
Av7-3 *********************************************TAGA***** 1699
Av10 *********************************************TAGA***** 1704
(R)K S C C P C W L
Av7-1 TCTTAATTCATTTGCTTATGTTTGCAGGGAAATCCTGCTGTCCTTGCTGGTTG 2573
Av7-2 ***************************************************** 2100
Av7-3 ***************************************************** 1752
Av10 ***************************************************** 1757
R/G G N C F W G Q N C Y P E/Q G C S G P
Av7-1 CGCGGTAATTGCTTCTGGGGACAGAACTGCTATCCGGAAGGCTGCTCAGGCCCTA 2629
Av7-2 ******************************************************* 2156
Av7-3 ******************************************************* 1806
Av10 G****************************T******C****************** 1811
K V X
Av7-1 AAGTATAATGGTCGAC 2644
Av7-2 **************** 2171
Av7-3 **************** 1823
Av10 **************** 1828
Supplementary Fig. 2 Nucleotide alignment of Av7 and Av10 genomic sequences. Identical
residues are indicated by asterisks and gaps by hyphens. Exons are in red and introns are in black.
Amino acid translation appears above the nucleotide sequence. Amino acids of the mature toxin
are in blue. Parenthesized amino acids are encoded by nucleotides from two exons. The stop codon
is denoted in the translation as "X". The location of the ATG start codon varies between the
sequences and is indicated in bold and square parentheses of the first methionine which
corresponds only to Av7-3 and Av10. Primers used in genome walking for differentiating between
processed pseudogenes and ancestral Av7 genes are marked by magenta and orange arrows,
respectively.
Av7 L1D
Av7 L2D
Av7 L3D

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