Differential Analyses With DSS Guide

• 1 Introduction
• 2 Using DSS for differential expression analysis
  • 2.1 Input data preparation
  • 2.2 Single factor experiment
  • 2.3 Multifactor experiment
• 3 Using DSS for differential methylation analysis
  • 3.1 Overview
  • 3.2 Input data preparation
  • 3.3 DML/DMR detection from two-group comparison
  • 3.4 DML/DMR detection from general experimental design
    • 3.4.1 Hypothesis testing in general experimental design
    • 3.4.2 Example analysis for data from general experimental design
• 4 Session Info