Présentation Manual Analysistool

Manual_analysistool

User Manual:

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Analysis Tool
Manual

Isam BEN SOLTANE

Files Selection Tab

Files stored in projects:
•
•
•

Local folders containing modified versions of the selected files
Creating a project: Create an empty local folder
Load a project: Load the files and the information of a project formerly created
SAVE THE PROJECT AFTER ADDING ALL THE FILES

2

Files Selection Tab

Creates a new project
named test

Add local files to the project:
• ENRICHED FCS FILE
• REQUIRED KEYWORDS
Use Clustering Tool or Keywords Registor

3

Files Selection Tab

Select the column containing the
populations labels

4

Rename each population

OR

Or load a mapping file (.csv)

eg: scaffold node landmarks

Files Selection Tab

Selected Files:

• Download the selected files stored in each project
• Remove all the selected files and their information from the project

5

Files Selection Tab

Save Project:

• Save all the files and their information in the folder associated with the project

6

Scoring Tab

Run Analysis Button:
Compute the purity, precision, recall, FG matrices and clusters information for each
registered set of parameters, for each algorithm

Scoring Tab
Visualization Panel : Annotations Visualization

Select a file (only one in this case)

Select an algorithm among those used
on the chosen file

Select a set of parameters of the chose
selected algorithm

Scoring Tab
Visualization Panel : Annotations Visualization

Select the markers to visualize

Selected Populations :
Markers expression

Plot

Selected Annotations :
Markers expression

Scoring Tab
Visualization Panel : F-score variations

Select a file (only one in this case)

Select an algorithm among those used
on the chosen file

Scoring Tab
Visualization Panel : F-score variations

Select the variable parameter

Evolution of the F-score of all populations:
•

Depending on the values of the
variable parameter

•

Each population is identified by a
color

•

The maximum value of the
cumulated F-score is the number of
populations

Plot

Select the values of the other parameters

Scoring Tab
Visualization Panel : F-score variations

Select a set of parameters

Plot

•

F-Score of each population for the selected set of
parameters

•

The relative size gives the ratio number of events in the file

size of population

Scoring Tab
Visualization Panel : Summary table

Summary Table:
Sum of the F-Score of all populations for every file, every algorithm with every set of parameters

Scoring Tab
Visualization Panel : Advanced Options

•
•
•

Purity of each cluster relative to their population.
The clusters are grouped into populations
The purity threshold sorts clusters in the two tables on the left
Source Exif Data: 
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Linearized                      : Yes
Author                          : Ana Zarubica
Create Date                     : 2018:10:30 14:53:35+01:00
Modify Date                     : 2018:10:30 14:53:38+01:00
Tagged PDF                      : Yes
XMP Toolkit                     : Adobe XMP Core 5.2-c001 63.139439, 2010/09/27-13:37:26
Metadata Date                   : 2018:10:30 14:53:38+01:00
Creator Tool                    : Acrobat PDFMaker 10.0 pour PowerPoint
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Instance ID                     : uuid:be3de1ea-b5ca-4881-8f65-4ca5ac840ac6
Format                          : application/pdf
Title                           : Présentation PowerPoint
Creator                         : Ana Zarubica
Producer                        : Adobe PDF Library 10.0
Page Layout                     : SinglePage
Page Count                      : 14
EXIF Metadata provided by EXIF.tools

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