SS33012 User Manual
User Manual:
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Page Count: 235 [warning: Documents this large are best viewed by clicking the View PDF Link!]
- Introduction
- New Features Available in Version 3.30
- File Organization
- Starting SS
- Converting Files from 3.24
- Starter File
- Forecast File
- Data File
- Overview of Data File
- Units of Measure
- Time Units
- Terminology
- Model Dimensions
- Fleet Definitions
- Optional Bycatch Fleets
- Catch
- Indices
- Discard
- Mean Body Weight or Length
- Population Length Bins
- Dirichlet Parameter Number and Effective Sample Sizes
- Length Composition Data
- Age Composition Option
- Conditional Age-at-Length
- Mean Length or Body Weight-at-Age
- Environmental Data
- Generalized Size Composition Data
- Tag-Recapture Data
- Stock Composition Data
- Selectivity Empirical Data
- Excluding Data
- Data Super-Periods
- Control File
- Overview of Control File
- Parameter Line Elements
- Terminology
- Beginning of Control File Inputs
- Biology
- Spawner-Recruitment
- Fishing Mortality Method
- Catchability
- Selectivity and Discard
- Tag Recapture Parameters
- Variance Adjustment Factors
- Lambdas (Emphasis Factors)
- Controls for Variance of Derived Quantities
- Using Time-Varying Parameters
- Parameter Priors
- Optional Inputs
- Likelihood components
- Running SS
- Output Files
- Using R To View Model Output (r4ss)
- Special Set-ups
- Change Log
- Appendix A: Recruitment Variability and Bias Correction
- Appendix B: Data Weighting
- Appendix C: Forecast Module
- Appendix D: Code Examples
- Appendix E: In Process and Wish List Items for Future Versions
- Appendix F: Example Model Files