BLAST® Command Line Applications User Manual Blast
User Manual:
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Page Count: 58
- Contributors
- Introduction
- User Manual
- Cookbook
- Query a BLAST database with a GI, but exclude that GI from the results
- Create a masked BLAST database
- Search with database masking enabled
- Display BLAST search results with custom output format
- Use blastdb_aliastool to manage the BLAST databases
- Reformat BLAST reports with blast_formatter
- Extracting data from BLAST databases with blastdbcmd
- Use Windowmasker to filter the query sequence(s) in a BLAST search
- Building a BLAST database with local sequences
- Limiting a Search with a List of Identifiers
- Multiple databases vs. spaces in filenames and paths
- Specifying a sequence as the multiple sequence alignment master in psiblast
- Ignoring the consensus sequence in the multiple sequence alignment in psiblast
- Performing a DELTA-BLAST search
- Appendices