GenomeStudio Genotyping Module V2.0 User Guide (11319113) V2
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Table of Contents
Chapter 1 Overview
Introduction
Install the GenomeStudio Software
Start the GenomeStudio Software
Chapter 2 Getting Started
Introduction
Create a Project From LIMS
Create a Project From a Sample Sheet
Create a Project From Directories
Import Cluster Positions
Chapter 3 Viewing Data
Introduction
Full Data Table
SNP Table
Samples Table
Paired Sample Table
Errors Table
Chapter 4 Editing Data
Introduction
Main Window Menus
SNP Graph Toolbar
Data Table Toolbar
Context Menus
Chapter 5 Common Tasks
Select Samples in the SNP Graph
Display Marked Samples
Customize the SNP Table
View Samples in the Controls Dashboard
Update SNP Statistics
Change the No-Call Threshold
Chapter 6 Generating Clusters
Introduction
Cluster SNPs
Edit Clusters
Export a Cluster File
Chapter 7 Analyzing Data
Import Phenotype Information
Estimate the Gender of Selected Samples
Edit the Sample Properties
Analyze Paired Sample Data
View Concordance Calculations
Export Allele Calls
Import Allele Calls
GenomeStudio Plug-ins
Chapter 8 Generating Reports
Introduction
Generate a Final Report
DNA Report
Locus Summary Report
Locus x DNA Report
Generate a Reproducibility and Heritability Report
Technical Assistance
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