Manual

• Authors
• License
• Requirements
• Installation
• New in v2.0
• Error reporting
• Running polyDFE
  • Specifying the data file(s)
  • Specifying the DFE and parameters of interest
  • Simulating data
    • Examples
  • Estimating the DFE and
    • Controlling the optimization procedure
    • Excluding divergence data
    • Controlling the polyDFE output
    • Additional arguments
    • What to do when the gradient / size is large
    • Examples
• Post-processing using R
  • Parsing the output of polyDFE
  • Summarizing the DFE
  • Calculating
  • Bootstrapping data
  • Model testing
  • Model averaging
  • Creating init_file
  • Examples
• Index