Ibm Laptop Spss Amos 21 Users Manual User’s Guide
SPSS Amos 21 to the manual 9d7b89e5-1ffe-4980-b242-0e890c119c95
2015-02-02
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IBM® SPSS® Amos™ 21 User’s Guide James L. Arbuckle Note: Before using this information and the product it supports, read the information in the “Notices” section on page 631. This edition applies to IBM® SPSS® Amos™ 21 and to all subsequent releases and modifications until otherwise indicated in new editions. Microsoft product screenshots reproduced with permission from Microsoft Corporation. Licensed Materials - Property of IBM © Copyright IBM Corp. 1983, 2012. U.S. Government Users Restricted Rights - Use, duplication or disclosure restricted by GSA ADP Schedule Contract with IBM Corp. © Copyright 2012 Amos Development Corporation. All Rights Reserved. AMOS is a trademark of Amos Development Corporation. Contents Part I: Getting Started 1 Introduction 1 Featured Methods . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2 About the Tutorial . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 About the Examples . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 About the Documentation . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 Other Sources of Information . . . . . . . . . . . . . . . . . . . . . . . . . . 4 Acknowledgements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2 Tutorial: Getting Started with Amos Graphics 7 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 Launching Amos Graphics . . . . . . . . . . . . . . . . . . . . . . . . . . . 9 Creating a New Model. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10 Specifying the Data File . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11 Specifying the Model and Drawing Variables . . . . . . . . . . . . . . . 11 Naming the Variables . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 Drawing Arrows . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13 Constraining a Parameter . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 Altering the Appearance of a Path Diagram . . . . . . . . . . . . . . . . 15 To Move an Object . . . . . . . . . . . . . . . . . . To Reshape an Object or Double-Headed Arrow . To Delete an Object. . . . . . . . . . . . . . . . . . To Undo an Action . . . . . . . . . . . . . . . . . . To Redo an Action . . . . . . . . . . . . . . . . . . iii . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15 15 15 16 16 Setting Up Optional Output . . . . . . . . . . . . . . . . . . . . . . . . . . 16 Performing the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18 Viewing Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18 To View Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . 18 To View Graphics Output . . . . . . . . . . . . . . . . . . . . . . . . 19 Printing the Path Diagram. . . . . . . . . . . . . . . . . . . . . . . . . . . 20 Copying the Path Diagram . . . . . . . . . . . . . . . . . . . . . . . . . . 21 Copying Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21 Part II: Examples 1 Estimating Variances and Covariances 23 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 23 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 23 Bringing In the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24 Analyzing the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 25 Specifying the Model. . . Naming the Variables . . Changing the Font . . . . Establishing Covariances Performing the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 25 26 27 27 28 Viewing Graphics Output . . . . . . . . . . . . . . . . . . . . . . . . . . . 28 Viewing Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 29 Optional Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 33 Calculating Standardized Estimates . . . . . . . . . . . . . . . . . . 33 Rerunning the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . 34 Viewing Correlation Estimates as Text Output . . . . . . . . . . . . 34 Distribution Assumptions for Amos Models . . . . . . . . . . . . . . . . 35 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 36 Generating Additional Output . . . . . . . . . . . . . . . . . . . . . . 39 Modeling in C# . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 39 Other Program Development Tools . . . . . . . . . . . . . . . . . . . . . 40 iv 2 Testing Hypotheses 41 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .41 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .41 Parameters Constraints . . . . . . . . . . . . . . . . . . . . . . . . . . . .41 Constraining Variances . . . . . . . . . . . . . . . . . . . . . . . . . .42 Specifying Equal Parameters. . . . . . . . . . . . . . . . . . . . . . .43 Constraining Covariances . . . . . . . . . . . . . . . . . . . . . . . .44 Moving and Formatting Objects . . . . . . . . . . . . . . . . . . . . . . . .45 Data Input . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .46 Performing the Analysis. . . . . . . . . . . . . . . . . . . . . . . . . .47 Viewing Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . .47 Optional Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .48 Covariance Matrix Estimates. . . . . . . . . . . . . . . . . . . . . . .49 Displaying Covariance and Variance Estimates on the Path Diagram. . . . . . . . . . . . . . . . . . . . . . . . . . . .51 Labeling Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .51 Hypothesis Testing . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .52 Displaying Chi-Square Statistics on the Path Diagram . . . . . . . . . . .53 Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .55 Timing Is Everything . . . . . . . . . . . . . . . . . . . . . . . . . . . .57 3 More Hypothesis Testing 59 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .59 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .59 Bringing In the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .59 Testing a Hypothesis That Two Variables Are Uncorrelated . . . . . . .60 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .60 Viewing Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .62 Viewing Graphics Output. . . . . . . . . . . . . . . . . . . . . . . . . . . .63 Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .65 v 4 Conventional Linear Regression 67 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 67 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 67 Analysis of the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 68 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 69 Identification . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 70 Fixing Regression Weights . . . . . . . . . . . . . . . . . . . . . . . . . . 70 Viewing the Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . 72 Viewing Graphics Output . . . . . . . . . . . . . . . . . . . . . . . . . . . 74 Viewing Additional Text Output. . . . . . . . . . . . . . . . . . . . . . . . 75 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 77 Assumptions about Correlations among Exogenous Variables . . . 77 Equation Format for the AStructure Method . . . . . . . . . . . . . 78 5 Unobserved Variables 81 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 81 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 81 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 83 Measurement Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 83 Structural Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 84 Identification . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 85 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 85 Changing the Orientation of the Drawing Area Creating the Path Diagram . . . . . . . . . . . Rotating Indicators . . . . . . . . . . . . . . . . Duplicating Measurement Models. . . . . . . Entering Variable Names . . . . . . . . . . . . Completing the Structural Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 86 87 88 88 90 90 Results for Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 90 Viewing the Graphics Output . . . . . . . . . . . . . . . . . . . . . . 93 vi Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .93 Results for Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .94 Testing Model B against Model A. . . . . . . . . . . . . . . . . . . . . . .96 Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .98 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .98 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .99 6 Exploratory Analysis 101 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 101 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 101 Model A for the Wheaton Data . . . . . . . . . . . . . . . . . . . . . . . 102 Specifying the Model . Identification . . . . . . Results of the Analysis Dealing with Rejection Modification Indices. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 102 . 103 . 103 . 104 . 105 Model B for the Wheaton Data . . . . . . . . . . . . . . . . . . . . . . . 107 Text Output . . . . . . . . . . . . . . . . . . . . . . Graphics Output for Model B . . . . . . . . . . . . Misuse of Modification Indices . . . . . . . . . . Improving a Model by Adding New Constraints . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 108 . 109 . 110 . 110 Model C for the Wheaton Data . . . . . . . . . . . . . . . . . . . . . . . 114 Results for Model C . . . . . . . . . . . . . . . . . . . . . . . . . . . 114 Testing Model C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 115 Parameter Estimates for Model C . . . . . . . . . . . . . . . . . . . 115 Multiple Models in a Single Analysis . . . . . . . . . . . . . . . . . . . . 116 Output from Multiple Models . . . . . . . . . . . . . . . . . . . . . . . . 119 Viewing Graphics Output for Individual Models . . . . Viewing Fit Statistics for All Four Models. . . . . . . . Obtaining Optional Output . . . . . . . . . . . . . . . . Obtaining Tables of Indirect, Direct, and Total Effects vii . . . . . . . . . . . . . . . . . . . . . . . . . 119 . 119 . 121 . 122 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 123 Model A . . . . . . . . . Model B . . . . . . . . . Model C . . . . . . . . . Fitting Multiple Models. 7 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A Nonrecursive Model . . . . 123 124 125 126 129 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 129 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 129 Felson and Bohrnstedt’s Model . . . . . . . . . . . . . . . . . . . . . . 130 Model Identification . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 131 Results of the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 131 Text Output . . . . . . . . . . . . . . . . . Obtaining Standardized Estimates . . . . Obtaining Squared Multiple Correlations Graphics Output. . . . . . . . . . . . . . . Stability Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 131 133 133 134 135 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 136 8 Factor Analysis 137 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 137 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 137 A Common Factor Model . . . . . . . . . . . . . . . . . . . . . . . . . . 138 Identification . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 139 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . 140 Drawing the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . 140 Results of the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 141 Obtaining Standardized Estimates . . . . . . . . . . . . . . . . . . 142 Viewing Standardized Estimates . . . . . . . . . . . . . . . . . . . 143 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 144 viii 9 An Alternative to Analysis of Covariance 145 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 145 Analysis of Covariance and Its Alternative . . . . . . . . . . . . . . . . 145 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 146 Analysis of Covariance . . . . . . . . . . . . . . . . . . . . . . . . . . . . 147 Model A for the Olsson Data. . . . . . . . . . . . . . . . . . . . . . . . . 147 Identification. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 148 Specifying Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 149 Results for Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 149 Searching for a Better Model . . . . . . . . . . . . . . . . . . . . . . . . 149 Requesting Modification Indices . . . . . . . . . . . . . . . . . . . 149 Model B for the Olsson Data. . . . . . . . . . . . . . . . . . . . . . . . . 150 Results for Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 151 Model C for the Olsson Data . . . . . . . . . . . . . . . . . . . . . . . . . 153 Drawing a Path Diagram for Model C . . . . . . . . . . . . . . . . . 154 Results for Model C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 154 Fitting All Models At Once . . . . . . . . . . . . . . . . . . . . . . . . . . 154 Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 155 Model A . . . . . . . . . Model B . . . . . . . . . Model C . . . . . . . . . Fitting Multiple Models . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 155 . 155 . 156 . 157 10 Simultaneous Analysis of Several Groups 159 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 159 Analysis of Several Groups . . . . . . . . . . . . . . . . . . . . . . . . . 159 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 160 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 160 Conventions for Specifying Group Differences Specifying Model A . . . . . . . . . . . . . . . . Text Output . . . . . . . . . . . . . . . . . . . . . Graphics Output . . . . . . . . . . . . . . . . . . ix . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 161 . 161 . 166 . 167 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 168 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 170 Graphics Output. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 172 Multiple Model Input . . . . . . . . . . . . . . . . . . . . . . . . . . 173 11 Felson and Bohrnstedt’s Girls and Boys 175 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 175 Felson and Bohrnstedt’s Model . . . . . . . . . . . . . . . . . . . . . . 175 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 175 Specifying Model A for Girls and Boys . . . . . . . . . . . . . . . . . . 176 Specifying a Figure Caption . . . . . . . . . . . . . . . . . . . . . . 176 Text Output for Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . 179 Graphics Output for Model A . . . . . . . . . . . . . . . . . . . . . . . . 181 Obtaining Critical Ratios for Parameter Differences . . . . . . . . 182 Model B for Girls and Boys . . . . . . . . . . . . . . . . . . . . . . . . . 182 Results for Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 184 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 184 Graphics Output. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 187 Fitting Models A and B in a Single Analysis . . . . . . . . . . . . . . . 188 Model C for Girls and Boys . . . . . . . . . . . . . . . . . . . . . . . . . 188 Results for Model C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 191 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 192 Model A . . . . . . . . . Model B . . . . . . . . . Model C . . . . . . . . . Fitting Multiple Models. . . . . . . . . . . . . . . . . x . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 192 193 193 194 12 Simultaneous Factor Analysis for Several Groups 195 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 195 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 195 Model A for the Holzinger and Swineford Boys and Girls . . . . . . . . 196 Naming the Groups . . . . . . . . . . . . . . . . . . . . . . . . . . . 196 Specifying the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . 197 Results for Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 198 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 198 Graphics Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 199 Model B for the Holzinger and Swineford Boys and Girls . . . . . . . . 200 Results for Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 202 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 202 Graphics Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 203 Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 206 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 206 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 207 13 Estimating and Testing Hypotheses about Means 209 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 209 Means and Intercept Modeling . . . . . . . . . . . . . . . . . . . . . . . 209 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 210 Model A for Young and Old Subjects . . . . . . . . . . . . . . . . . . . . 210 Mean Structure Modeling in Amos Graphics . . . . . . . . . . . . . . . 210 Results for Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 212 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 212 Graphics Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 214 Model B for Young and Old Subjects . . . . . . . . . . . . . . . . . . . . 214 Results for Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 216 Comparison of Model B with Model A . . . . . . . . . . . . . . . . . . . 216 xi Multiple Model Input. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 216 Mean Structure Modeling in VB.NET . . . . . . . . . . . . . . . . . . . 217 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 217 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 218 Fitting Multiple Models. . . . . . . . . . . . . . . . . . . . . . . . . 219 14 Regression with an Explicit Intercept 221 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 221 Assumptions Made by Amos . . . . . . . . . . . . . . . . . . . . . . . . 221 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 222 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . 222 Results of the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 223 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 223 Graphics Output. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 225 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 225 15 Factor Analysis with Structured Means 229 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 229 Factor Means . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 229 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 230 Model A for Boys and Girls . . . . . . . . . . . . . . . . . . . . . . . . . 230 Specifying the Model. . . . . . . . . . . . . . . . . . . . . . . . . . 230 Understanding the Cross-Group Constraints . . . . . . . . . . . . . . . 232 Results for Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 233 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 233 Graphics Output. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 233 Model B for Boys and Girls . . . . . . . . . . . . . . . . . . . . . . . . . 235 Results for Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 237 Comparing Models A and B. . . . . . . . . . . . . . . . . . . . . . . . . 237 xii Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 238 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 238 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 239 Fitting Multiple Models . . . . . . . . . . . . . . . . . . . . . . . . . 240 16 Sörbom’s Alternative to Analysis of Covariance 241 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 241 Assumptions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 241 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 242 Changing the Default Behavior . . . . . . . . . . . . . . . . . . . . . . . 243 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 243 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . 243 Results for Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 245 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 245 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 247 Results for Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 249 Model C. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 250 Results for Model C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 251 Model D . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 252 Results for Model D . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 253 Model E . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 255 Results for Model E . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 255 Fitting Models A Through E in a Single Analysis . . . . . . . . . . . . . 255 Comparison of Sörbom’s Method with the Method of Example 9 . . . . 256 Model X. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 256 Modeling in Amos Graphics . . . . . . . . . . . . . . . . . . . . . . . . . 256 Results for Model X . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 257 Model Y . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 257 Results for Model Y . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 259 Model Z . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 260 xiii Results for Model Z . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 261 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 262 Model A . . . . . . . . . Model B . . . . . . . . . Model C . . . . . . . . . Model D . . . . . . . . . Model E . . . . . . . . . Fitting Multiple Models. Models X, Y, and Z . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17 Missing Data . . . . . . . 262 263 264 265 266 267 268 269 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 269 Incomplete Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 269 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 270 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . 271 Saturated and Independence Models . . . . . . . . . . . . . . . . . . . 272 Results of the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 273 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 273 Graphics Output. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 275 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 275 Fitting the Factor Model (Model A) . . . . . . . . . . . . . . . Fitting the Saturated Model (Model B) . . . . . . . . . . . . . Computing the Likelihood Ratio Chi-Square Statistic and P . Performing All Steps with One Program . . . . . . . . . . . . 18 More about Missing Data . . . . . . . . . . . . 276 277 281 282 283 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 283 Missing Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 283 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 284 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 285 Results for Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 287 xiv Graphics Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 287 Text Output. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 287 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 290 Output from Models A and B. . . . . . . . . . . . . . . . . . . . . . . . . 291 Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 292 Model A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 292 Model B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 293 19 Bootstrapping 295 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 295 The Bootstrap Method . . . . . . . . . . . . . . . . . . . . . . . . . . . . 295 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 296 A Factor Analysis Model . . . . . . . . . . . . . . . . . . . . . . . . . . . 296 Monitoring the Progress of the Bootstrap . . . . . . . . . . . . . . . . . 297 Results of the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . 297 Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 301 20 Bootstrapping for Model Comparison 303 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 303 Bootstrap Approach to Model Comparison . . . . . . . . . . . . . . . . 303 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 304 Five Models . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 304 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 308 Summary . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 310 Modeling in VB.NET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 310 21 Bootstrapping to Compare Estimation Methods 311 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 311 Estimation Methods. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 311 xv About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 312 About the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 312 Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 315 Modeling in VB.NET . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 318 22 Specification Search 319 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 319 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 319 About the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 319 Specification Search with Few Optional Arrows. . . . . . . . . . . . . 320 Specifying the Model. . . . . . . . . . . . . . . . . . Selecting Program Options . . . . . . . . . . . . . . Performing the Specification Search . . . . . . . . Viewing Generated Models . . . . . . . . . . . . . . Viewing Parameter Estimates for a Model . . . . . Using BCC to Compare Models . . . . . . . . . . . . Viewing the Akaike Weights . . . . . . . . . . . . . Using BIC to Compare Models . . . . . . . . . . . . Using Bayes Factors to Compare Models . . . . . . Rescaling the Bayes Factors . . . . . . . . . . . . . Examining the Short List of Models. . . . . . . . . . Viewing a Scatterplot of Fit and Complexity. . . . . Adjusting the Line Representing Constant Fit . . . . Viewing the Line Representing Constant C – df. . . Adjusting the Line Representing Constant C – df . . Viewing Other Lines Representing Constant Fit. . . Viewing the Best-Fit Graph for C . . . . . . . . . . . Viewing the Best-Fit Graph for Other Fit Measures Viewing the Scree Plot for C . . . . . . . . . . . . . Viewing the Scree Plot for Other Fit Measures . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 320 322 323 324 325 326 327 328 329 331 332 333 335 336 337 338 338 339 340 342 Specification Search with Many Optional Arrows . . . . . . . . . . . . 344 Specifying the Model. . . . . . . . . . . . . . . . . . . . . . . . . . 345 Making Some Arrows Optional . . . . . . . . . . . . . . . . . . . . 345 Setting Options to Their Defaults . . . . . . . . . . . . . . . . . . . 345 xvi Performing the Specification Search . . . . . . . . . . . . . . . . . 346 Using BIC to Compare Models . . . . . . . . . . . . . . . . . . . . . 347 Viewing the Scree Plot . . . . . . . . . . . . . . . . . . . . . . . . . 348 Limitations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 348 23 Exploratory Factor Analysis by Specification Search 349 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 349 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 349 About the Model. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 349 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 350 Opening the Specification Search Window . . . . . . . . . . . . . . . . 350 Making All Regression Weights Optional . . . . . . . . . . . . . . . . . 351 Setting Options to Their Defaults . . . . . . . . . . . . . . . . . . . . . . 351 Performing the Specification Search . . . . . . . . . . . . . . . . . . . . 353 Using BCC to Compare Models . . . . . . . . . . . . . . . . . . . . . . . 354 Viewing the Scree Plot . . . . . . . . . . . . . . . . . . . . . . . . . . . . 357 Viewing the Short List of Models . . . . . . . . . . . . . . . . . . . . . . 357 Heuristic Specification Search . . . . . . . . . . . . . . . . . . . . . . . 358 Performing a Stepwise Search . . . . . . . . . . . . . . . . . . . . . . . 359 Viewing the Scree Plot . . . . . . . . . . . . . . . . . . . . . . . . . . . . 360 Limitations of Heuristic Specification Searches . . . . . . . . . . . . . 361 24 Multiple-Group Factor Analysis 363 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 363 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 363 Model 24a: Modeling Without Means and Intercepts . . . . . . . . . . 363 Specifying the Model . . . . . . . . . . . . . . . . . Opening the Multiple-Group Analysis Dialog Box . Viewing the Parameter Subsets . . . . . . . . . . . Viewing the Generated Models . . . . . . . . . . . Fitting All the Models and Viewing the Output . . . xvii . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 364 . 364 . 366 . 367 . 368 Customizing the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . 369 Model 24b: Comparing Factor Means . . . . . . . . . . . . . . . . . . . 370 Specifying the Model. . . . . . . . . . . . Removing Constraints . . . . . . . . . . . Generating the Cross-Group Constraints Fitting the Models. . . . . . . . . . . . . . Viewing the Output . . . . . . . . . . . . . 25 Multiple-Group Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 370 371 372 373 374 377 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 377 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 377 About the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 377 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . 378 Constraining the Latent Variable Means and Intercepts . . . . . . . . 378 Generating Cross-Group Constraints . . . . . . . . . . . . . . . . . . . 379 Fitting the Models . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 381 Viewing the Text Output . . . . . . . . . . . . . . . . . . . . . . . . . . . 381 Examining the Modification Indices . . . . . . . . . . . . . . . . . . . . 382 Modifying the Model and Repeating the Analysis . . . . . . . . . 383 26 Bayesian Estimation 385 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 385 Bayesian Estimation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 385 Selecting Priors . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 387 Performing Bayesian Estimation Using Amos Graphics . . . . . . 388 Estimating the Covariance. . . . . . . . . . . . . . . . . . . . . . . 388 Results of Maximum Likelihood Analysis . . . . . . . . . . . . . . . . . 389 Bayesian Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 390 Replicating Bayesian Analysis and Data Imputation Results . . . . . . 392 Examining the Current Seed. . . . . . . . . . . . . . . . . . . . . . 392 Changing the Current Seed . . . . . . . . . . . . . . . . . . . . . . 393 Changing the Refresh Options . . . . . . . . . . . . . . . . . . . . 395 xviii Assessing Convergence . . . . . . . . . . . . . . . . . . . . . . . . . . . 396 Diagnostic Plots . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 398 Bivariate Marginal Posterior Plots . . . . . . . . . . . . . . . . . . . . . 404 Credible Intervals . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 407 Changing the Confidence Level . . . . . . . . . . . . . . . . . . . . 407 Learning More about Bayesian Estimation . . . . . . . . . . . . . . . . 408 27 Bayesian Estimation Using a Non-Diffuse Prior Distribution 409 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 409 About the Example . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 409 More about Bayesian Estimation . . . . . . . . . . . . . . . . . . . . . . 409 Bayesian Analysis and Improper Solutions . . . . . . . . . . . . . . . . 410 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 410 Fitting a Model by Maximum Likelihood . . . . . . . . . . . . . . . . . . 411 Bayesian Estimation with a Non-Informative (Diffuse) Prior. . . . . . . 412 Changing the Number of Burn-In Observations . . . . . . . . . . . 412 28 Bayesian Estimation of Values Other Than Model Parameters 423 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 423 About the Example . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 423 The Wheaton Data Revisited . . . . . . . . . . . . . . . . . . . . . . . . 423 Indirect Effects . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 424 Estimating Indirect Effects . . . . . . . . . . . . . . . . . . . . . . . 425 Bayesian Analysis of Model C . . . . . . . . . . . . . . . . . . . . . . . . 427 Additional Estimands . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 428 Inferences about Indirect Effects . . . . . . . . . . . . . . . . . . . . . . 431 xix 29 Estimating a User-Defined Quantity in Bayesian SEM 437 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 437 About the Example . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 437 The Stability of Alienation Model . . . . . . . . . . . . . . . . . . . . . 437 Numeric Custom Estimands. . . . . . . . . . . . . . . . . . . . . . . . . 443 Dragging and Dropping . . . . . . . . . . . . . . . . . . . . . . . . 447 Dichotomous Custom Estimands . . . . . . . . . . . . . . . . . . . . . . 457 Defining a Dichotomous Estimand . . . . . . . . . . . . . . . . . . 457 30 Data Imputation 461 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 461 About the Example . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 461 Multiple Imputation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 462 Model-Based Imputation . . . . . . . . . . . . . . . . . . . . . . . . . . 462 Performing Multiple Data Imputation Using Amos Graphics . . . . . . 462 31 Analyzing Multiply Imputed Datasets 469 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 469 Analyzing the Imputed Data Files Using SPSS Statistics . . . . . . . . 469 Step 2: Ten Separate Analyses . . . . . . . . . . . . . . . . . . . . . . . 470 Step 3: Combining Results of Multiply Imputed Data Files . . . . . . . 471 Further Reading . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 473 32 Censored Data 475 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 475 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 475 Recoding the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . 477 Analyzing the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . 477 Performing a Regression Analysis . . . . . . . . . . . . . . . . . . 478 xx Posterior Predictive Distributions . . . . . . . . . . . . . . . . . . . . . . 481 Imputation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 484 General Inequality Constraints on Data Values . . . . . . . . . . . . . . 488 33 Ordered-Categorical Data 489 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 489 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 489 Specifying the Data File . . . . . Recoding the Data within Amos Specifying the Model . . . . . . Fitting the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 491 . 492 . 500 . 501 MCMC Diagnostics . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 504 Posterior Predictive Distributions . . . . . . . . . . . . . . . . . . . . . . 506 Posterior Predictive Distributions for Latent Variables. . . . . . . . . . 511 Imputation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 516 34 Mixture Modeling with Training Data 521 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 521 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 521 Performing the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 524 Specifying the Data File . . . . . . . . . . . . . . . . . . . . . . . . . . . 526 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 530 Fitting the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 532 Classifying Individual Cases . . . . . . . . . . . . . . . . . . . . . . . . . 535 Latent Structure Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . 537 35 Mixture Modeling without Training Data 539 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 539 About the Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 539 Performing the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 540 xxi Specifying the Data File . . . . . . . . . . . . . . . . . . . . . . . . . . . 542 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . 545 Constraining the Parameters . . . . . . . . . . . . . . . . . . . . . 546 Fitting the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 548 Classifying Individual Cases . . . . . . . . . . . . . . . . . . . . . . . . 551 Latent Structure Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . 553 Label Switching . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 554 36 Mixture Regression Modeling 557 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 557 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 557 First Dataset . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 557 Second Dataset . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 559 The Group Variable in the Dataset . . . . . . . . . . . . . . . . . . 560 Performing the Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 561 Specifying the Data File . . . . . . . . . . . . . . . . . . . . . . . . . . . 563 Specifying the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . 566 Fitting the Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 567 Classifying Individual Cases . . . . . . . . . . . . . . . . . . . . . . . . 572 Improving Parameter Estimates . . . . . . . . . . . . . . . . . . . . . . 573 Prior Distribution of Group Proportions . . . . . . . . . . . . . . . . . . 575 Label Switching . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 576 37 Using Amos Graphics without Drawing a Path Diagram 577 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 577 About the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 578 A Common Factor Model . . . . . . . . . . . . . . . . . . . . . . . . . . 578 Creating a Plugin to Specify the Model Controlling Undo Capability . . . . . . . Compiling and Saving the Plugin . . . . Using the Plugin. . . . . . . . . . . . . . xxii . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 578 583 585 586 Other Aspects of the Analysis in Addition to Model Specification . . . 588 Defining Program Variables that Correspond to Model Variables . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 588 Part III: Appendices A Notation 591 B Discrepancy Functions 593 C Measures of Fit 597 Measures of Parsimony . . . . . . . . . . . . . . . . . . . . . . . . . . . 598 NPAR . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 598 DF . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 598 PRATIO . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 599 Minimum Sample Discrepancy Function . . . . . . . . . . . . . . . . . . 599 CMIN . . P. . . . . CMIN/DF FMIN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 599 . 599 . 601 . 602 Measures Based On the Population Discrepancy . . . . . . . . . . . . 602 NCP . . F0. . . . RMSEA PCLOSE . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 602 . 603 . 603 . 605 Information-Theoretic Measures . . . . . . . . . . . . . . . . . . . . . . 605 AIC . . . BCC . . BIC . . . CAIC . . ECVI . . MECVI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . xxiii . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 605 . 606 . 606 . 607 . 607 . 608 Comparisons to a Baseline Model . . . . . . . . . . . . . . . . . . . . . 608 NFI RFI IFI . TLI CFI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 609 610 611 611 612 Parsimony Adjusted Measures. . . . . . . . . . . . . . . . . . . . . . . 612 PNFI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 613 PCFI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 613 GFI and Related Measures . . . . . . . . . . . . . . . . . . . . . . . . . 613 GFI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 613 AGFI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 614 PGFI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 615 Miscellaneous Measures . . . . . . . . . . . . . . . . . . . . . . . . . . 615 HI 90 . . . HOELTER . LO 90 . . . RMR . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 615 615 616 616 Selected List of Fit Measures. . . . . . . . . . . . . . . . . . . . . . . . 617 D Numeric Diagnosis of Non-Identifiability 619 E Using Fit Measures to Rank Models 621 F Baseline Models for Descriptive Fit Measures 625 Rescaling of AIC, BCC, and BIC 627 G Zero-Based Rescaling . . . . . . . . . . . . . . . . . . . . . . . . . . . . 627 Akaike Weights and Bayes Factors (Sum = 1) . . . . . . . . . . . . . . 628 Akaike Weights and Bayes Factors (Max = 1) . . . . . . . . . . . . . . 629 xxiv Notices 631 Bibliography 635 Index 647 xxv Chapter 1 Introduction IBM SPSS Amos implements the general approach to data analysis known as structural equation modeling (SEM), also known as analysis of covariance structures, or causal modeling. This approach includes, as special cases, many wellknown conventional techniques, including the general linear model and common factor analysis. Input: 1 visperc 1 Output: e1 .70 visperc e1 .43 spatial cubes 1 e2 spatial .65 cubes e2 .54 lozenges 1 .74 e3 lozenges .49 1 paragraph 1 e3 .77 e4 .88 paragraph e4 .68 verbal sentence 1 e5 verbal .83 sentence e5 .71 wordmean 1 .84 e6 wordmean e6 Chi-square = 7.853 (8 df) p = .448 IBM SPSS Amos (Analysis of Moment Structures) is an easy-to-use program for visual SEM. With Amos, you can quickly specify, view, and modify your model graphically using simple drawing tools. Then you can assess your model’s fit, make any modifications, and print out a publication-quality graphic of your final model. Simply specify the model graphically (left). Amos quickly performs the computations and displays the results (right). 1 2 Chapter 1 Structural equation modeling (SEM) is sometimes thought of as esoteric and difficult to learn and use. This is incorrect. Indeed, the growing importance of SEM in data analysis is largely due to its ease of use. SEM opens the door for nonstatisticians to solve estimation and hypothesis testing problems that once would have required the services of a specialist. IBM SPSS Amos was originally designed as a tool for teaching this powerful and fundamentally simple method. For this reason, every effort was made to see that it is easy to use. Amos integrates an easy-to-use graphical interface with an advanced computing engine for SEM. The publication-quality path diagrams of Amos provide a clear representation of models for students and fellow researchers. The numeric methods implemented in Amos are among the most effective and reliable available. Featured Methods Amos provides the following methods for estimating structural equation models: Maximum likelihood Unweighted least squares Generalized least squares Browne’s asymptotically distribution-free criterion Scale-free least squares Bayesian estimation IBM SPSS Amos goes well beyond the usual capabilities found in other structural equation modeling programs. When confronted with missing data, Amos performs state-of-the-art estimation by full information maximum likelihood instead of relying on ad-hoc methods like listwise or pairwise deletion, or mean imputation. The program can analyze data from several populations at once. It can also estimate means for exogenous variables and intercepts in regression equations. The program makes bootstrapped standard errors and confidence intervals available for all parameter estimates, effect estimates, sample means, variances, covariances, and correlations. It also implements percentile intervals and bias-corrected percentile intervals (Stine, 1989), as well as Bollen and Stine’s (1992) bootstrap approach to model testing. Multiple models can be fitted in a single analysis. Amos examines every pair of models in which one model can be obtained by placing restrictions on the parameters of the other. The program reports several statistics appropriate for comparing such 3 Introduction models. It provides a test of univariate normality for each observed variable as well as a test of multivariate normality and attempts to detect outliers. IBM SPSS Amos accepts a path diagram as a model specification and displays parameter estimates graphically on a path diagram. Path diagrams used for model specification and those that display parameter estimates are of presentation quality. They can be printed directly or imported into other applications such as word processors, desktop publishing programs, and general-purpose graphics programs. About the Tutorial The tutorial is designed to get you up and running with Amos Graphics. It covers some of the basic functions and features and guides you through your first Amos analysis. Once you have worked through the tutorial, you can learn about more advanced functions using the online Help, or you can continue working through the examples to get a more extended introduction to structural modeling with IBM SPSS Amos. About the Examples Many people like to learn by doing. Knowing this, we have developed many examples that quickly demonstrate practical ways to use IBM SPSS Amos. The initial examples introduce the basic capabilities of Amos as applied to simple problems. You learn which buttons to click, how to access the several supported data formats, and how to maneuver through the output. Later examples tackle more advanced modeling problems and are less concerned with program interface issues. Examples 1 through 4 show how you can use Amos to do some conventional analyses—analyses that could be done using a standard statistics package. These examples show a new approach to some familiar problems while also demonstrating all of the basic features of Amos. There are sometimes good reasons for using Amos to do something simple, like estimating a mean or correlation or testing the hypothesis that two means are equal. For one thing, you might want to take advantage of the ability of Amos to handle missing data. Or maybe you want to use the bootstrapping capability of Amos, particularly to obtain confidence intervals. Examples 5 through 8 illustrate the basic techniques that are commonly used nowadays in structural modeling. 4 Chapter 1 Example 9 and those that follow demonstrate advanced techniques that have so far not been used as much as they deserve. These techniques include: Simultaneous analysis of data from several different populations. Estimation of means and intercepts in regression equations. Maximum likelihood estimation in the presence of missing data. Bootstrapping to obtain estimated standard errors and confidence intervals. Amos makes these techniques especially easy to use, and we hope that they will become more commonplace. Specification searches. Bayesian estimation. Imputation of missing values. Analysis of censored data. Analysis of ordered-categorical data. Mixture modeling. Tip: If you have questions about a particular Amos feature, you can always refer to the extensive online Help provided by the program. About the Documentation IBM SPSS Amos 21 comes with extensive documentation, including an online Help system, this user’s guide, and advanced reference material for Amos Basic and the Amos API (Application Programming Interface). If you performed a typical installation, you can find the IBM SPSS Amos 21 Programming Reference Guide in the following location: C:\Program Files\IBM\SPSS\Amos\21\Documentation\Programming Reference.pdf. Other Sources of Information Although this user’s guide contains a good bit of expository material, it is not by any means a complete guide to the correct and effective use of structural modeling. Many excellent SEM textbooks are available. 5 Introduction Structural Equation Modeling: A Multidisciplinary Journal contains methodological articles as well as applications of structural modeling. It is published by Taylor and Francis (http://www.tandf.co.uk). Carl Ferguson and Edward Rigdon established an electronic mailing list called Semnet to provide a forum for discussions related to structural modeling. You can find information about subscribing to Semnet at www.gsu.edu/~mkteer/semnet.html. Acknowledgements Many users of previous versions of Amos provided valuable feedback, as did many users who tested the present version. Torsten B. Neilands wrote Examples 26 through 31 in this User’s Guide with contributions by Joseph L. Schafer. Eric Loken reviewed Examples 32 and 33. He also provided valuable insights into mixture modeling as well as important suggestions for future developments in Amos. A last word of warning: While Amos Development Corporation has engaged in extensive program testing to ensure that Amos operates correctly, all complicated software, Amos included, is bound to contain some undetected bugs. We are committed to correcting any program errors. If you believe you have encountered one, please report it to technical support. James L. Arbuckle Chapter 2 Tutorial: Getting Started with Amos Graphics Introduction Remember your first statistics class when you sweated through memorizing formulas and laboriously calculating answers with pencil and paper? The professor had you do this so that you would understand some basic statistical concepts. Later, you discovered that a calculator or software program could do all of these calculations in a split second. This tutorial is a little like that early statistics class. There are many shortcuts to drawing and labeling path diagrams in Amos Graphics that you will discover as you work through the examples in this user’s guide or as you refer to the online help. The intent of this tutorial is to simply get you started using Amos Graphics. It will cover some of the basic functions and features of IBM SPSS Amos and guide you through your first Amos analysis. Once you have worked through the tutorial, you can learn about more advanced functions from the online help, or you can continue to learn incrementally by working your way through the examples. If you performed a typical installation, you can find the path diagram constructed in this tutorial in this location: C:\Program Files\IBM\SPSS\Amos\21\Tutorial\. The file Startsps.amw uses a data file in SPSS Statistics format. Getstart.amw is the same path diagram but uses data from a Microsoft Excel file. Tip: IBM SPSS Amos 21 provides more than one way to accomplish most tasks. For all menu commands except Tools > Macro, there is a toolbar button that performs the same task. For many tasks, Amos also provides keyboard shortcuts. The user’s guide 7 8 Chapter 2 demonstrates the menu path. For information about the toolbar buttons and keyboard shortcuts, see the online help. About the Data Hamilton (1990) provided several measurements on each of 21 states. Three of the measurements will be used in this tutorial: Average SAT score Per capita income expressed in $1,000 units Median education for residents 25 years of age or older You can find the data in the Tutorial directory within the Excel 8.0 workbook Hamilton.xls in the worksheet named Hamilton. The data are as follows: SAT Income 899 896 897 889 823 857 860 890 889 888 925 869 896 827 908 885 887 790 868 904 888 14.345 16.37 13.537 12.552 11.441 12.757 11.799 10.683 14.112 14.573 13.144 15.281 14.121 10.758 11.583 12.343 12.729 10.075 12.636 10.689 13.065 Education 12.7 12.6 12.5 12.5 12.2 12.7 12.4 12.5 12.5 12.6 12.6 12.5 12.5 12.2 12.7 12.4 12.3 12.1 12.4 12.6 12.4 9 Tutorial: Getting Started with Amos Graphics The following path diagram shows a model for these data: This is a simple regression model where one observed variable, SAT, is predicted as a linear combination of the other two observed variables, Education and Income. As with nearly all empirical data, the prediction will not be perfect. The variable Other represents variables other than Education and Income that affect SAT. Each single-headed arrow represents a regression weight. The number 1 in the figure specifies that Other must have a weight of 1 in the prediction of SAT. Some such constraint must be imposed in order to make the model identified, and it is one of the features of the model that must be communicated to Amos. Launching Amos Graphics You can launch Amos Graphics in any of the following ways: Click Start on the Windows task bar, and choose All Programs > IBM SPSS Statistics > IBM SPSS Amos 21 > Amos Graphics. Double-click any path diagram (*.amw). Drag a path diagram (*.amw) file from Windows Explorer to the Amos Graphics window. Click Start on the Windows task bar, and choose All Programs > IBM SPSS Statistics > IBM SPSS Amos 21 > View Path Diagrams. Then double-click a path diagram in the View Path Diagrams window. From within SPSS Statistics, choose Analyze > IBM SPSS Amos from the menus. 10 Chapter 2 Creating a New Model E From the menus, choose File > New. Your work area appears. The large area on the right is where you draw path diagrams. The toolbar on the left provides one-click access to the most frequently used buttons. You can use either the toolbar or menu commands for most operations. 11 Tutorial: Getting Started with Amos Graphics Specifying the Data File The next step is to specify the file that contains the Hamilton data. This tutorial uses a Microsoft Excel 8.0 (*.xls) file, but Amos supports several common database formats, including SPSS Statistics *.sav files. If you launch Amos from the Add-ons menu in SPSS Statistics, Amos automatically uses the file that is open in SPSS Statistics. E From the menus, choose File > Data Files. E In the Data Files dialog box, click File Name. E Browse to the Tutorial folder. If you performed a typical installation, the path is C:\Program Files\IBM\SPSS\Amos\21\Tutorial\ . E In the Files of type list, select Excel 8.0 (*.xls). E Select Hamilton.xls, and then click Open. E In the Data Files dialog box, click OK. Specifying the Model and Drawing Variables The next step is to draw the variables in your model. First, you’ll draw three rectangles to represent the observed variables, and then you’ll draw an ellipse to represent the unobserved variable. E From the menus, choose Diagram > Draw Observed. E In the drawing area, move your mouse pointer to where you want the Education rectangle to appear. Click and drag to draw the rectangle. Don’t worry about the exact size or placement of the rectangle because you can change it later. E Use the same method to draw two more rectangles for Income and SAT. E From the menus, choose Diagram > Draw Unobserved. 12 Chapter 2 E In the drawing area, move your mouse pointer to the right of the three rectangles and click and drag to draw the ellipse. The model in your drawing area should now look similar to the following: Naming the Variables E In the drawing area, right-click the top left rectangle and choose Object Properties from the pop-up menu. E Click the Text tab. E In the Variable name text box, type Education. E Use the same method to name the remaining variables. Then close the Object Properties dialog box. 13 Tutorial: Getting Started with Amos Graphics Your path diagram should now look like this: Drawing Arrows Now you will add arrows to the path diagram, using the following model as your guide: E From the menus, choose Diagram > Draw Path. E Click and drag to draw an arrow between Education and SAT. E Use this method to add each of the remaining single-headed arrows. E From the menus, choose Diagram > Draw Covariances. E Click and drag to draw a double-headed arrow between Income and Education. Don’t worry about the curve of the arrow because you can adjust it later. 14 Chapter 2 Constraining a Parameter To identify the regression model, you must define the scale of the latent variable Other. You can do this by fixing either the variance of Other or the path coefficient from Other to SAT at some positive value. The following shows you how to fix the path coefficient at unity (1). E In the drawing area, right-click the arrow between Other and SAT and choose Object Properties from the pop-up menu. E Click the Parameters tab. E In the Regression weight text box, type 1. E Close the Object Properties dialog box. There is now a 1 above the arrow between Other and SAT. Your path diagram is now complete, other than any changes you may wish to make to its appearance. It should look something like this: 15 Tutorial: Getting Started with Amos Graphics Altering the Appearance of a Path Diagram You can change the appearance of your path diagram by moving and resizing objects. These changes are visual only; they do not affect the model specification. To Move an Object E From the menus, choose Edit > Move. E In the drawing area, click and drag the object to its new location. To Reshape an Object or Double-Headed Arrow E From the menus, choose Edit > Shape of Object. E In the drawing area, click and drag the object until you are satisfied with its size and shape. To Delete an Object E From the menus, choose Edit > Erase. E In the drawing area, click the object you wish to delete. 16 Chapter 2 To Undo an Action E From the menus, choose Edit > Undo. To Redo an Action E From the menus, choose Edit > Redo. Setting Up Optional Output Some of the output in Amos is optional. In this step, you will choose which portions of the optional output you want Amos to display after the analysis. E From the menus, choose View > Analysis Properties. E Click the Output tab. E Select the Minimization history, Standardized estimates, and Squared multiple correlations check boxes. 17 Tutorial: Getting Started with Amos Graphics E Close the Analysis Properties dialog box. 18 Chapter 2 Performing the Analysis The only thing left to do is perform the calculations for fitting the model. Note that in order to keep the parameter estimates up to date, you must do this every time you change the model, the data, or the options in the Analysis Properties dialog box. E From the menus, click Analyze > Calculate Estimates. E Because you have not yet saved the file, the Save As dialog box appears. Type a name for the file and click Save. Amos calculates the model estimates. The panel to the left of the path diagram displays a summary of the calculations. Viewing Output When Amos has completed the calculations, you have two options for viewing the output: text and graphics. To View Text Output E From the menus, choose View > Text Output. The tree diagram in the upper left pane of the Amos Output window allows you to choose a portion of the text output for viewing. E Click Estimates to view the parameter estimates. 19 Tutorial: Getting Started with Amos Graphics To View Graphics Output E Click the Show the output path diagram button . E In the Parameter Formats pane to the left of the drawing area, click Standardized estimates. 20 Chapter 2 Your path diagram now looks like this: The value 0.49 is the correlation between Education and Income. The values 0.72 and 0.11 are standardized regression weights. The value 0.60 is the squared multiple correlation of SAT with Education and Income. E In the Parameter Formats pane to the left of the drawing area, click Unstandardized estimates. Your path diagram should now look like this: Printing the Path Diagram E From the menus, choose File > Print. The Print dialog box appears. 21 Tutorial: Getting Started with Amos Graphics E Click Print. Copying the Path Diagram Amos Graphics lets you easily export your path diagram to other applications such as Microsoft Word. E From the menus, choose Edit > Copy (to Clipboard). E Switch to the other application and use the Paste function to insert the path diagram. Amos Graphics exports only the diagram; it does not export the background. Copying Text Output E In the Amos Output window, select the text you want to copy. E Right-click the selected text, and choose Copy from the pop-up menu. E Switch to the other application and use the Paste function to insert the text. Example 1 Estimating Variances and Covariances Introduction This example shows you how to estimate population variances and covariances. It also discusses the general format of Amos input and output. About the Data Attig (1983) showed 40 subjects a booklet containing several pages of advertisements. Then each subject was given three memory performance tests. Test recall cued place Explanation The subject was asked to recall as many of the advertisements as possible. The subject’s score on this test was the number of advertisements recalled correctly. The subject was given some cues and asked again to recall as many of the advertisements as possible. The subject’s score was the number of advertisements recalled correctly. The subject was given a list of the advertisements that appeared in the booklet and was asked to recall the page location of each one. The subject’s score on this test was the number of advertisements whose location was recalled correctly. Attig repeated the study with the same 40 subjects after a training exercise intended to improve memory performance. There were thus three performance measures before training and three performance measures after training. In addition, she recorded scores on a vocabulary test, as well as age, sex, and level of education. Attig’s data files are included in the Examples folder provided by Amos. 23 24 Example 1 Bringing In the Data E From the menus, choose File > New. E From the menus, choose File > Data Files. E In the Data Files dialog box, click File Name. E Browse to the Examples folder. If you performed a typical installation, the path is C:\Program Files\IBM\SPSS\Amos\21\Examples\ . E In the Files of type list, select Excel 8.0 (*.xls), select UserGuide.xls, and then click Open. E In the Data Files dialog box, click OK. Amos displays a list of worksheets in the UserGuide workbook. The worksheet Attg_yng contains the data for this example. E In the Select a Data Table dialog box, select Attg_yng, then click View Data. The Excel worksheet for the Attg_yng data file opens. 25 Estimating Variances and Covariance s As you scroll across the worksheet, you will see all of the test variables from the Attig study. This example uses only the following variables: recall1 (recall pretest), recall2 (recall posttest), place1 (place recall pretest), and place2 (place recall posttest). E After you review the data, close the data window. E In the Data Files dialog box, click OK. Analyzing the Data In this example, the analysis consists of estimating the variances and covariances of the recall and place variables before and after training. Specifying the Model E From the menus, choose Diagram > Draw Observed. E In the drawing area, move your mouse pointer to where you want the first rectangle to appear. Click and drag to draw the rectangle. E From the menus, choose Edit > Duplicate. E Click and drag a duplicate from the first rectangle. Release the mouse button to position the duplicate. 26 Example 1 E Create two more duplicate rectangles until you have four rectangles side by side. Tip: If you want to reposition a rectangle, choose Edit > Move from the menus and drag the rectangle to its new position. Naming the Variables E From the menus, choose View > Variables in Dataset. The Variables in Dataset dialog box appears. E Click and drag the variable recall1 from the list to the first rectangle in the drawing area. E Use the same method to name the variables recall2, place1, and place2. E Close the Variables in Dataset dialog box. 27 Estimating Variances and Covariance s Changing the Font E Right-click a variable and choose Object Properties from the pop-up menu. The Object Properties dialog box appears. E Click the Text tab and adjust the font attributes as desired. Establishing Covariances If you leave the path diagram as it is, Amos Graphics will estimate the variances of the four variables, but it will not estimate the covariances between them. In Amos Graphics, the rule is to assume a correlation or covariance of 0 for any two variables that are not connected by arrows. To estimate the covariances between the observed variables, we must first connect all pairs with double-headed arrows. E From the menus, choose Diagram > Draw Covariances. E Click and drag to draw arrows that connect each variable to every other variable. Your path diagram should have six double-headed arrows. 28 Example 1 Performing the Analysis E From the menus, choose Analyze > Calculate Estimates. Because you have not yet saved the file, the Save As dialog box appears. E Enter a name for the file and click Save. Viewing Graphics Output E Click the Show the output path diagram button . Amos displays the output path diagram with parameter estimates. 29 Estimating Variances and Covariance s In the output path diagram, the numbers displayed next to the boxes are estimated variances, and the numbers displayed next to the double-headed arrows are estimated covariances. For example, the variance of recall1 is estimated at 5.79, and that of place1 at 33.58. The estimated covariance between these two variables is 4.34. Viewing Text Output E From the menus, choose View > Text Output. E In the tree diagram in the upper left pane of the Amos Output window, click Estimates. The first estimate displayed is of the covariance between recall1 and recall2. The covariance is estimated to be 2.56. Right next to that estimate, in the S.E. column, is an estimate of the standard error of the covariance, 1.16. The estimate 2.56 is an 30 Example 1 observation on an approximately normally distributed random variable centered around the population covariance with a standard deviation of about 1.16, that is, if the assumptions in the section “Distribution Assumptions for Amos Models” on p. 35 are met. For example, you can use these figures to construct a 95% confidence interval on the population covariance by computing 2.56 ± 1.96 × 1.160 = 2.56 ± 2.27 . Later, you will see that you can use Amos to estimate many kinds of population parameters besides covariances and can follow the same procedure to set a confidence interval on any one of them. Next to the standard error, in the C.R. column, is the critical ratio obtained by dividing the covariance estimate by its standard error ( 2.20 = 2.56 ⁄ 1.16 ). This ratio is relevant to the null hypothesis that, in the population from which Attig’s 40 subjects came, the covariance between recall1 and recall2 is 0. If this hypothesis is true, and still under the assumptions in the section “Distribution Assumptions for Amos Models” on p. 35, the critical ratio is an observation on a random variable that has an approximate standard normal distribution. Thus, using a significance level of 0.05, any critical ratio that exceeds 1.96 in magnitude would be called significant. In this example, since 2.20 is greater than 1.96, you would say that the covariance between recall1 and recall2 is significantly different from 0 at the 0.05 level. The P column, to the right of C.R., gives an approximate two-tailed p value for testing the null hypothesis that the parameter value is 0 in the population. The table shows that the covariance between recall1 and recall2 is significantly different from 0 with p = 0.03. The calculation of P assumes that parameter estimates are normally distributed, and it is correct only in large samples. See Appendix A for more information. The assertion that the parameter estimates are normally distributed is only an approximation. Moreover, the standard errors reported in the S.E. column are only approximations and may not be the best available. Consequently, the confidence interval and the hypothesis test just discussed are also only approximate. This is because the theory on which these results are based is asymptotic. Asymptotic means that it can be made to apply with any desired degree of accuracy, but only by using a sufficiently large sample. We will not discuss whether the approximation is satisfactory with the present sample size because there would be no way to generalize the conclusions to the many other kinds of analyses that you can do with Amos. However, you may want to re-examine the null hypothesis that recall1 and recall2 are uncorrelated, just to see what is meant by an approximate test. We previously concluded that the covariance is significantly different from 0 because 2.20 exceeds 1.96. The p value associated with a standard normal deviate of 2.20 is 0.028 (twotailed), which, of course, is less than 0.05. By contrast, the conventional t statistic (for 31 Estimating Variances and Covariance s example, Runyon and Haber, 1980, p. 226) is 2.509 with 38 degrees of freedom ( p = 0.016 ). In this example, both p values are less than 0.05, so both tests agree in rejecting the null hypothesis at the 0.05 level. However, in other situations, the two p values might lie on opposite sides of 0.05. You might or might not regard this as especially serious—at any rate, the two tests can give different results. There should be no doubt about which test is better. The t test is exact under the assumptions of normality and independence of observations, no matter what the sample size. In Amos, the test based on critical ratio depends on the same assumptions; however, with a finite sample, the test is only approximate. Note: For many interesting applications of Amos, there is no exact test or exact standard error or exact confidence interval available. On the bright side, when fitting a model for which conventional estimates exist, maximum likelihood point estimates (for example, the numbers in the Estimate column) are generally identical to the conventional estimates. E Now click Notes for Model in the upper left pane of the Amos Output window. The following table plays an important role in every Amos analysis: Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (10 – 10): 10 10 0 32 Example 1 The Number of distinct sample moments referred to are sample means, variances, and covariances. In most analyses, including the present one, Amos ignores means, so that the sample moments are the sample variances of the four variables, recall1, recall2, place1, and place2, and their sample covariances. There are four sample variances and six sample covariances, for a total of 10 sample moments. The Number of distinct parameters to be estimated are the corresponding population variances and covariances. There are, of course, four population variances and six population covariances, which makes 10 parameters to be estimated. The Degrees of freedom is the amount by which the number of sample moments exceeds the number of parameters to be estimated. In this example, there is a one-toone correspondence between the sample moments and the parameters to be estimated, so it is no accident that there are zero degrees of freedom. As we will see beginning with Example 2, any nontrivial null hypothesis about the parameters reduces the number of parameters that have to be estimated. The result will be positive degrees of freedom. For now, there is no null hypothesis being tested. Without a null hypothesis to test, the following table is not very interesting: Chi-square = 0.00 Degrees of freedom = 0 Probability level cannot be computed If there had been a hypothesis under test in this example, the chi-square value would have been a measure of the extent to which the data were incompatible with the hypothesis. A chi-square value of 0 would ordinarily indicate no departure from the null hypothesis. But in the present example, the 0 value for degrees of freedom and the 0 chi-square value merely reflect the fact that there was no null hypothesis in the first place. Minimum was achieved This line indicates that Amos successfully estimated the variances and covariances. Sometimes structural modeling programs like Amos fail to find estimates. Usually, when Amos fails, it is because you have posed a problem that has no solution, or no unique solution. For example, if you attempt maximum likelihood estimation with observed variables that are linearly dependent, Amos will fail because such an analysis cannot be done in principle. Problems that have no unique solution are discussed elsewhere in this user’s guide under the subject of identifiability. Less commonly, Amos can fail because an estimation problem is just too difficult. The possibility of such failures is generic to programs for analysis of moment structures. Although the computational method used by Amos is highly effective, no computer program that does the kind of analysis that Amos does can promise success in every case. 33 Estimating Variances and Covariance s Optional Output So far, we have discussed output that Amos generates by default. You can also request additional output. Calculating Standardized Estimates You may be surprised to learn that Amos displays estimates of covariances rather than correlations. When the scale of measurement is arbitrary or of no substantive interest, correlations have more descriptive meaning than covariances. Nevertheless, Amos and similar programs insist on estimating covariances. Also, as will soon be seen, Amos provides a simple method for testing hypotheses about covariances but not about correlations. This is mainly because it is easier to write programs that way. On the other hand, it is not hard to derive correlation estimates after the relevant variances and covariances have been estimated. To calculate standardized estimates: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Select the Standardized estimates check box. E Close the Analysis Properties dialog box. 34 Example 1 Rerunning the Analysis Because you have changed the options in the Analysis Properties dialog box, you must rerun the analysis. E From the menus, choose Analyze > Calculate Estimates. E Click the Show the output path diagram button. E In the Parameter Formats pane to the left of the drawing area, click Standardized estimates. Viewing Correlation Estimates as Text Output E From the menus, choose View > Text Output. 35 Estimating Variances and Covariance s E In the tree diagram in the upper left pane of the Amos Output window, expand Estimates, Scalars, and then click Correlations. Distribution Assumptions for Amos Models Hypothesis testing procedures, confidence intervals, and claims for efficiency in maximum likelihood or generalized least-squares estimation depend on certain assumptions. First, observations must be independent. For example, the 40 young people in the Attig study have to be picked independently from the population of young people. Second, the observed variables must meet some distributional requirements. If the observed variables have a multivariate normal distribution, that will suffice. Multivariate normality of all observed variables is a standard distribution assumption in many structural equation modeling and factor analysis applications. There is another, more general, situation under which maximum likelihood estimation can be carried out. If some exogenous variables are fixed (that is, they are either known beforehand or measured without error), their distributions may have any shape, provided that: For any value pattern of the fixed variables, the remaining (random) variables have a (conditional) normal distribution. The (conditional) variance-covariance matrix of the random variables is the same for every pattern of the fixed variables. 36 Example 1 The (conditional) expected values of the random variables depend linearly on the values of the fixed variables. A typical example of a fixed variable would be an experimental treatment, classifying respondents into a study group and a control group, respectively. It is all right that treatment is non-normally distributed, as long as the other exogenous variables are normally distributed for study and control cases alike, and with the same conditional variance-covariance matrix. Predictor variables in regression analysis (see Example 4) are often regarded as fixed variables. Many people are accustomed to the requirements for normality and independent observations, since these are the usual requirements for many conventional procedures. However, with Amos, you have to remember that meeting these requirements leads only to asymptotic conclusions (that is, conclusions that are approximately true for large samples). Modeling in VB.NET It is possible to specify and fit a model by writing a program in VB.NET or in C#. Writing programs is an alternative to using Amos Graphics to specify a model by drawing its path diagram. This section shows how to write a VB.NET program to perform the analysis of Example 1. A later section explains how to do the same thing in C#. Amos comes with its own built-in editor for VB.NET and C# programs. It is accessible from the Windows Start menu. To begin Example 1 using the built-in editor: E From the Windows Start menu, choose All Programs > IBM SPSS Statistics > IBM SPSS Amos 21 > Program Editor. E In the Program Editor window, choose File > New VB Program. 37 Estimating Variances and Covariance s E Enter the VB.NET code for specifying and fitting the model in place of the ‘Your code goes here comment. The following figure shows the program editor after the complete program has been entered. Note: The Examples directory contains all of the pre-written examples. 38 Example 1 To open the VB.NET file for the present example: E From the Program Editor menus, choose File > Open. E Select the file Ex01.vb in the \Amos\21\Examples\ directory. The following table gives a line-by-line explanation of the program. Program Statement Dim Sem As New AmosEngine Sem.TextOutput Sem.BeginGroup … Sem.AStructure("recall1") Sem.AStructure("recall2") Sem.AStructure("place1") Sem.AStructure("place2") Sem.FitModel() Sem.Dispose() Try/Finally/End Try Explanation Declares Sem as an object of type AmosEngine. The methods and properties of the Sem object are used to specify and fit the model. Creates an output file containing the results of the analysis. At the end of the analysis, the contents of the output file are displayed in a separate window. Begins the model specification for a single group (that is, a single population). This line also specifies that the Attg_yng worksheet in the Excel workbook UserGuide.xls contains the input data. Sem.AmosDir() is the location of the Amos program directory. Specifies the model. The four AStructure statements declare the variances of recall1, recall2, place1, and place2 to be free parameters. The other eight variables in the Attg_yng data file are left out of this analysis. In an Amos program (but not in Amos Graphics), observed exogenous variables are assumed by default to be correlated, so that Amos will estimate the six covariances among the four variables. Fits the model. Releases resources used by the Sem object. It is particularly important for your program to use an AmosEngine object’s Dispose method before creating another AmosEngine object. A process is allowed only one instance of an AmosEngine object at a time. The Try block guarantees that the Dispose method will be called even if an error occurs during program execution. E To perform the analysis, from the menus, choose File > Run. 39 Estimating Variances and Covariance s Generating Additional Output Some AmosEngine methods generate additional output. For example, the Standardized method displays standardized estimates. The following figure shows the use of the Standardized method: Modeling in C# Writing an Amos program in C# is similar to writing one in VB.NET. To start a new C# program, in the built-in program editor of Amos: E Choose File > New C# Program (rather than File > New VB Program). E Choose File > Open to open Ex01.cs, which is a C# version of the VB.NET program Ex01.vb. 40 Example 1 Other Program Development Tools The built-in program editor in Amos is used throughout this user’s guide for writing and executing Amos programs. However, you can use the development tool of your choice. The Examples folder contains a VisualStudio subfolder where you can find Visual Studio VB.NET and C# solutions for Example 1. Example 2 Testing Hypotheses Introduction This example demonstrates how you can use Amos to test simple hypotheses about variances and covariances. It also introduces the chi-square test for goodness of fit and elaborates on the concept of degrees of freedom. About the Data We will use Attig’s (1983) spatial memory data, which were described in Example 1. We will also begin with the same path diagram as in Example 1. To demonstrate the ability of Amos to use different data formats, this example uses a data file in SPSS Statistics format instead of an Excel file. Parameters Constraints The following is the path diagram from Example 1. We can think of the variable objects as having small boxes nearby (representing the variances) that are filled in once Amos has estimated the parameters. 41 42 Example 2 You can fill these boxes yourself instead of letting Amos fill them. Constraining Variances Suppose you want to set the variance of recall1 to 6 and the variance of recall2 to 8. E In the drawing area, right-click recall1 and choose Object Properties from the pop-up menu. E Click the Parameters tab. E In the Variance text box, type 6. E With the Object Properties dialog box still open, click recall2 and set its variance to 8. 43 Testing Hypotheses E Close the dialog box. The path diagram displays the parameter values you just specified. This is not a very realistic example because the numbers 6 and 8 were just picked out of the air. Meaningful parameter constraints must have some underlying rationale, perhaps being based on theory or on previous analyses of similar data. Specifying Equal Parameters Sometimes you will be interested in testing whether two parameters are equal in the population. You might, for example, think that the variances of recall1 and recall2 might be equal without having a particular value for the variances in mind. To investigate this possibility, do the following: E In the drawing area, right-click recall1 and choose Object Properties from the pop-up menu. E Click the Parameters tab. E In the Variance text box, type v_recall. E Click recall2 and label its variance as v_recall. E Use the same method to label the place1 and place2 variances as v_place. It doesn’t matter what label you use. The important thing is to enter the same label for each variance you want to force to be equal. The effect of using the same label is to 44 Example 2 require both of the variances to have the same value without specifying ahead of time what that value is. Benefits of Specifying Equal Parameters Before adding any further constraints on the model parameters, let’s examine why we might want to specify that two parameters, like the variances of recall1 and recall2 or place1 and place2, are equal. Here are two benefits: If you specify that two parameters are equal in the population and if you are correct in this specification, then you will get more accurate estimates, not only of the parameters that are equal but usually of the others as well. This is the only benefit if you happen to know that the parameters are equal. If the equality of two parameters is a mere hypothesis, requiring their estimates to be equal will result in a test of that hypothesis. Constraining Covariances Your model may also include restrictions on parameters other than variances. For example, you may hypothesize that the covariance between recall1 and place1 is equal to the covariance between recall2 and place2. To impose this constraint: E In the drawing area, right-click the double-headed arrow that connects recall1 and place1, and choose Object Properties from the pop-up menu. E Click the Parameters tab. E In the Covariance text box, type a non-numeric string such as cov_rp. E Use the same method to set the covariance between recall2 and place2 to cov_rp. 45 Testing Hypotheses Moving and Formatting Objects While a horizontal layout is fine for small examples, it is not practical for analyses that are more complex. The following is a different layout of the path diagram on which we’ve been working: 46 Example 2 You can use the following tools to rearrange your path diagram until it looks like the one above: To move objects, choose Edit > Move from the menus, and then drag the object to its new location. You can also use the Move button to drag the endpoints of arrows. To copy formatting from one object to another, choose Edit > Drag Properties from the menus, select the properties you wish to apply, and then drag from one object to another. For more information about the Drag Properties feature, refer to online help. Data Input This example uses a data file in SPSS Statistics format. If you have SPSS Statistics installed, you can view the data as you load it. Even if you don’t have SPSS Statistics installed, Amos will still read the data. E From the menus, choose File > Data Files. E In the Data Files dialog box, click File Name. E Browse to the Examples folder. If you performed a typical installation, the path is C:\Program Files\IBM\SPSS\Amos\21\Examples\ . E In the Files of type list, select SPSS Statistics (*.sav), click Attg_yng, and then click Open. E If you have SPSS Statistics installed, click the View Data button in the Data Files dialog box. An SPSS Statistics window opens and displays the data. 47 Testing Hypotheses E Review the data and close the data view. E In the Data Files dialog box, click OK. Performing the Analysis E From the menus, choose Analyze > Calculate Estimates. E In the Save As dialog box, enter a name for the file and click Save. Amos calculates the model estimates. Viewing Text Output E From the menus, choose View > Text Output. E To view the parameter estimates, click Estimates in the tree diagram in the upper left pane of the Amos Output window. 48 Example 2 You can see that the parameters that were specified to be equal do have equal estimates. The standard errors here are generally smaller than the standard errors obtained in Example 1. Also, because of the constraints on the parameters, there are now positive degrees of freedom. E Now click Notes for Model in the upper left pane of the Amos Output window. While there are still 10 sample variances and covariances, the number of parameters to be estimated is only seven. Here is how the number seven is arrived at: The variances of recall1 and recall2, labeled v_recall, are constrained to be equal, and thus count as a single parameter. The variances of place1 and place2 (labeled v_place) count as another single parameter. A third parameter corresponds to the equal covariances recall1 <> place1 and recall2 <> place2 (labeled cov_rp). These three parameters, plus the four unlabeled, unrestricted covariances, add up to seven parameters that have to be estimated. The degrees of freedom (10 – 7 = 3) may also be thought of as the number of constraints placed on the original 10 variances and covariances. Optional Output The output we just discussed is all generated by default. You can also request additional output: E From the menus, choose View > Analysis Properties. E Click the Output tab. E Ensure that the following check boxes are selected: Minimization history, Standardized estimates, Sample moments, Implied moments, and Residual moments. 49 Testing Hypotheses E From the menus, choose Analyze > Calculate Estimates. Amos recalculates the model estimates. Covariance Matrix Estimates E To see the sample variances and covariances collected into a matrix, choose View > Text Output from the menus. E Click Sample Moments in the tree diagram in the upper left corner of the Amos Output window. 50 Example 2 The following is the sample covariance matrix: E In the tree diagram, expand Estimates and then click Matrices. The following is the matrix of implied covariances: Note the differences between the sample and implied covariance matrices. Because the model imposes three constraints on the covariance structure, the implied variances and covariances are different from the sample values. For example, the sample variance of place1 is 33.58, but the implied variance is 27.53. To obtain a matrix of residual covariances (sample covariances minus implied covariances), put a check mark next to Residual moments on the Output tab and repeat the analysis. The following is the matrix of residual covariances: 51 Testing Hypotheses Displaying Covariance and Variance Estimates on the Path Diagram As in Example 1, you can display the covariance and variance estimates on the path diagram. E Click the Show the output path diagram button. E In the Parameter Formats pane to the left of the drawing area, click Unstandardized estimates. Alternatively, you can request correlation estimates in the path diagram by clicking Standardized estimates. The following is the path diagram showing correlations: Labeling Output It may be difficult to remember whether the displayed values are covariances or correlations. To avoid this problem, you can use Amos to label the output. E Open the file Ex02.amw. E Right-click the caption at the bottom of the path diagram, and choose Object Properties from the pop-up menu. E Click the Text tab. 52 Example 2 Notice the word \format in the bottom line of the figure caption. Words that begin with a backward slash, like \format, are called text macros. Amos replaces text macros with information about the currently displayed model. The text macro \format will be replaced by the heading Model Specification, Unstandardized estimates, or Standardized estimates, depending on which version of the path diagram is displayed. Hypothesis Testing The implied covariances are the best estimates of the population variances and covariances under the null hypothesis. (The null hypothesis is that the parameters required to have equal estimates are truly equal in the population.) As we know from Example 1, the sample covariances are the best estimates obtained without making any assumptions about the population values. A comparison of these two matrices is relevant to the question of whether the null hypothesis is correct. If the null hypothesis is correct, both the implied and sample covariances are maximum likelihood estimates of the corresponding population values (although the implied covariances are better estimates). Consequently, you would expect the two matrices to resemble each other. On the other hand, if the null hypothesis is wrong, only the sample covariances are 53 Testing Hypotheses maximum likelihood estimates, and there is no reason to expect them to resemble the implied covariances. The chi-square statistic is an overall measure of how much the implied covariances differ from the sample covariances. Chi-square = 6.276 Degrees of freedom = 3 Probability level = 0.099 In general, the more the implied covariances differ from the sample covariances, the bigger the chi-square statistic will be. If the implied covariances had been identical to the sample covariances, as they were in Example 1, the chi-square statistic would have been 0. You can use the chi-square statistic to test the null hypothesis that the parameters required to have equal estimates are really equal in the population. However, it is not simply a matter of checking to see if the chi-square statistic is 0. Since the implied covariances and the sample covariances are merely estimates, you can’t expect them to be identical (even if they are both estimates of the same population covariances). Actually, you would expect them to differ enough to produce a chi-square in the neighborhood of the degrees of freedom, even if the null hypothesis is true. In other words, a chi-square value of 3 would not be out of the ordinary here, even with a true null hypothesis. You can say more than that: If the null hypothesis is true, the chisquare value (6.276) is a single observation on a random variable that has an approximate chi-square distribution with three degrees of freedom. The probability is about 0.099 that such an observation would be as large as 6.276. Consequently, the evidence against the null hypothesis is not significant at the 0.05 level. Displaying Chi-Square Statistics on the Path Diagram You can get the chi-square statistic and its degrees of freedom to appear in a figure caption on the path diagram using the text macros \cmin and \df. Amos replaces these text macros with the numeric values of the chi-square statistic and its degrees of freedom. You can use the text macro \p to display the corresponding right-tail probability under the chi-square distribution. E From the menus, choose Diagram > Figure Caption. E Click the location on the path diagram where you want the figure caption to appear. The Figure Caption dialog box appears. 54 Example 2 E In the Figure Caption dialog box, enter a caption that includes the \cmin, \df, and \p text macros, as follows: When Amos displays the path diagram containing this caption, it appears as follows: 55 Testing Hypotheses Modeling in VB.NET The following program fits the constrained model of Example 2: 56 Example 2 This table gives a line-by-line explanation of the program: Program Statement Dim Sem As New AmosEngine Sem.TextOutput Sem.Standardized() Sem.ImpliedMoments() Sem.SampleMoments() Sem.ResidualMoments() Sem.BeginGroup … Sem.AStructure("recall1 (v_recall)") Sem.AStructure("recall2 (v_recall)") Sem.AStructure("place1 (v_place)") Sem.AStructure("place2 (v_place)") Sem.AStructure("recall1 <> place1 (cov_rp)") Sem.AStructure("recall2 <> place2 (cov_rp)") Sem.FitModel() Sem.Dispose() Try/Finally/End Try Explanation Declares Sem as an object of type AmosEngine. The methods and properties of the Sem object are used to specify and fit the model. Creates an output file containing the results of the analysis. At the end of the analysis, the contents of the output file are displayed in a separate window. Displays standardized estimates, implied covariances, sample covariances, and residual covariances. Begins the model specification for a single group (that is, a single population). This line also specifies that the SPSS Statistics file Attg_yng.sav contains the input data. Sem.AmosDir() is the location of the Amos program directory. Specifies the model. The first four AStructure statements constrain the variances of the observed variables through the use of parameter names in parentheses. Recall1 and recall2 are required to have the same variance because both variances are labeled v_recall. The variances of place1 and place2 are similarly constrained to be equal. Each of the last two AStructure lines represents a covariance. The two covariances are both named cov_rp. Consequently, those covariances are constrained to be equal. Fits the model. Releases resources used by the Sem object. It is particularly important for your program to use an AmosEngine object’s Dispose method before creating another AmosEngine object. A process is allowed to have only one instance of an AmosEngine object at a time. This Try block guarantees that the Dispose method will be called even if an error occurs during program execution. 57 Testing Hypotheses E To perform the analysis, from the menus, choose File > Run. Timing Is Everything The AStructure lines must appear after BeginGroup; otherwise, Amos will not recognize that the variables named in the AStructure lines are observed variables in the attg_yng.sav dataset. In general, the order of statements matters in an Amos program. In organizing an Amos program, AmosEngine methods can be divided into three general groups1. Group 1 — Declarative Methods This group contains methods that tell Amos what results to compute and display. TextOutput is a Group 1 method, as are Standardized, ImpliedMoments, SampleMoments, and ResidualMoments. Many other Group 1 methods that are not used in this example are documented in the Amos 21 Programming Reference Guide. Group 2 — Data and Model Specification Methods This group consists of data description and model specification commands. BeginGroup and AStructure are Group 2 methods. Others are documented in the Amos 21 Programming Reference Guide. Group 3 — Methods for Retrieving Results These are commands to…well, retrieve results. So far, we have not used any Group 3 methods. Examples using Group 3 methods are given in the Amos 21 Programming Reference Guide. Tip: When you write an Amos program, it is important to pay close attention to the order in which you call the Amos engine methods. The rule is that groups must appear in order: Group 1, then Group 2, and finally Group 3. For more detailed information about timing rules and a complete listing of methods and their group membership, see the Amos 21 Programming Reference Guide. 1 There is also a fourth special group, consisting of only the Initialize Method. If the optional Initialize Method is used, it must come before the Group 1 methods. Example 3 More Hypothesis Testing Introduction This example demonstrates how to test the null hypothesis that two variables are uncorrelated, reinforces the concept of degrees of freedom, and demonstrates, in a concrete way, what is meant by an asymptotically correct test. About the Data For this example, we use the group of older subjects from Attig’s (1983) spatial memory study and the two variables age and vocabulary. We will use data formatted as a tab-delimited text file. Bringing In the Data E From the menus, choose File > New. E From the menus, choose File > Data Files. E In the Data Files dialog box, select File Name. E Browse to the Examples folder. If you performed a typical installation, the path is C:\Program Files\IBM\SPSS\Amos\21\Examples\ . 59 60 Example 3 E In the Files of type list, select Text (*.txt), select Attg_old.txt, and then click Open. E In the Data Files dialog box, click OK. Testing a Hypothesis That Two Variables Are Uncorrelated Among Attig’s 40 old subjects, the sample correlation between age and vocabulary is –0.09 (not very far from 0). Is this correlation nevertheless significant? To find out, we will test the null hypothesis that, in the population from which these 40 subjects came, the correlation between age and vocabulary is 0. We will do this by estimating the variance-covariance matrix under the constraint that age and vocabulary are uncorrelated. Specifying the Model Begin by drawing and naming the two observed variables, age and vocabulary, in the path diagram, using the methods you learned in Example 1. Amos provides two ways to specify that the covariance between age and vocabulary is 0. The most obvious way is simply to not draw a double-headed arrow connecting the two variables. The absence of a double-headed arrow connecting two exogenous variables implies that they are uncorrelated. So, without drawing anything more, the 61 More Hypothesis Testing model specified by the simple path diagram above specifies that the covariance (and thus the correlation) between age and vocabulary is 0. The second method of constraining a covariance parameter is the more general procedure introduced in Example 1 and Example 2. E From the menus, choose Diagram > Draw Covariances. E Click and drag to draw an arrow that connects vocabulary and age. E Right-click the arrow and choose Object Properties from the pop-up menu. E Click the Parameters tab. E Type 0 in the Covariance text box. E Close the Object Properties dialog box. Your path diagram now looks like this: 62 Example 3 E From the menus, choose Analyze > Calculate Estimates. The Save As dialog box appears. E Enter a name for the file and click Save. Amos calculates the model estimates. Viewing Text Output E From the menus, choose View > Text Output. E In the tree diagram in the upper left pane of the Amos Output window, click Estimates. Although the parameter estimates are not of primary interest in this analysis, they are as follows: In this analysis, there is one degree of freedom, corresponding to the single constraint that age and vocabulary be uncorrelated. The degrees of freedom can also be arrived at by the computation shown in the following text. To display this computation: E Click Notes for Model in the upper left pane of the Amos Output window. 63 More Hypothesis Testing The three sample moments are the variances of age and vocabulary and their covariance. The two distinct parameters to be estimated are the two population variances. The covariance is fixed at 0 in the model, not estimated from the sample information. Viewing Graphics Output E Click the Show the output path diagram button. E In the Parameter Formats pane to the left of the drawing area, click Unstandardized estimates. The following is the path diagram output of the unstandardized estimates, along with the test of the null hypothesis that age and vocabulary are uncorrelated: The probability of accidentally getting a departure this large from the null hypothesis is 0.555. The null hypothesis would not be rejected at any conventional significance level. 64 Example 3 The usual t statistic for testing this null hypothesis is 0.59 ( df = 38 , p = 0.56 two-sided). The probability level associated with the t statistic is exact. The probability level of 0.555 of the chi-square statistic is off, owing to the fact that it does not have an exact chi-square distribution in finite samples. Even so, the probability level of 0.555 is not bad. Here is an interesting question: If you use the probability level displayed by Amos to test the null hypothesis at either the 0.05 or 0.01 level, then what is the actual probability of rejecting a true null hypothesis? In the case of the present null hypothesis, this question has an answer, although the answer depends on the sample size. The second column in the next table shows, for several sample sizes, the real probability of a Type I error when using Amos to test the null hypothesis of zero correlation at the 0.05 level. The third column shows the real probability of a Type I error if you use a significance level of 0.01. The table shows that the bigger the sample size, the closer the true significance level is to what it is supposed to be. It’s too bad that such a table cannot be constructed for every hypothesis that Amos can be used to test. However, this much can be said about any such table: Moving from top to bottom, the numbers in the 0.05 column would approach 0.05, and the numbers in the 0.01 column would approach 0.01. This is what is meant when it is said that hypothesis tests based on maximum likelihood theory are asymptotically correct. The following table shows the actual probability of a Type I error when using Amos to test the hypothesis that two variables are uncorrelated: Sample Size 3 4 5 10 20 30 40 50 100 150 200 >500 Nominal Significance Level 0.05 0.250 0.150 0.115 0.073 0.060 0.056 0.055 0.054 0.052 0.051 0.051 0.050 0.01 0.122 0.056 0.038 0.018 0.013 0.012 0.012 0.011 0.011 0.010 0.010 0.010 65 More Hypothesis Testing Modeling in VB.NET Here is a program for performing the analysis of this example: The AStructure method constrains the covariance, fixing it at a constant 0. The program does not refer explicitly to the variances of age and vocabulary. The default behavior of Amos is to estimate those variances without constraints. Amos treats the variance of every exogenous variable as a free parameter except for variances that are explicitly constrained by the program. Example 4 Conventional Linear Regression Introduction This example demonstrates a conventional regression analysis, predicting a single observed variable as a linear combination of three other observed variables. It also introduces the concept of identifiability. About the Data Warren, White, and Fuller (1974) studied 98 managers of farm cooperatives. We will use the following four measurements: Test performance knowledge value satisfaction Explanation A 24-item test of performance related to “planning, organization, controlling, coordinating, and directing” A 26-item test of knowledge of “economic phases of management directed toward profit-making...and product knowledge” A 30-item test of “tendency to rationally evaluate means to an economic end” An 11-item test of “gratification obtained...from performing the managerial role” A fifth measure, past training, was also reported, but we will not use it. In this example, you will use the Excel worksheet Warren5v in the file UserGuide.xls, which is located in the Examples folder. If you performed a typical installation, the path is C:\Program Files\IBM\SPSS\Amos\21\Examples\ . 67 68 Example 4 Here are the sample variances and covariances: Warren5v also contains the sample means. Raw data are not available, but they are not needed by Amos for most analyses, as long as the sample moments (that is, means, variances, and covariances) are provided. In fact, only sample variances and covariances are required in this example. We will not need the sample means in Warren5v for the time being, and Amos will ignore them. Analysis of the Data Suppose you want to use scores on knowledge, value, and satisfaction to predict performance. More specifically, suppose you think that performance scores can be approximated by a linear combination of knowledge, value, and satisfaction. The prediction will not be perfect, however, and the model should thus include an error variable. Here is the initial path diagram for this relationship: 69 Conventional Linear Regression The single-headed arrows represent linear dependencies. For example, the arrow leading from knowledge to performance indicates that performance scores depend, in part, on knowledge. The variable error is enclosed in a circle because it is not directly observed. Error represents much more than random fluctuations in performance scores due to measurement error. Error also represents a composite of age, socioeconomic status, verbal ability, and anything else on which performance may depend but which was not measured in this study. This variable is essential because the path diagram is supposed to show all variables that affect performance scores. Without the circle, the path diagram would make the implausible claim that performance is an exact linear combination of knowledge, value, and satisfaction. The double-headed arrows in the path diagram connect variables that may be correlated with each other. The absence of a double-headed arrow connecting error with any other variable indicates that error is assumed to be uncorrelated with every other predictor variable—a fundamental assumption in linear regression. Performance is also not connected to any other variable by a double-headed arrow, but this is for a different reason. Since performance depends on the other variables, it goes without saying that it might be correlated with them. Specifying the Model Using what you learned in the first three examples, do the following: E Start a new path diagram. E Specify that the dataset to be analyzed is in the Excel worksheet Warren5v in the file UserGuide.xls. E Draw four rectangles and label them knowledge, value, satisfaction, and performance. E Draw an ellipse for the error variable. E Draw single-headed arrows that point from the exogenous, or predictor, variables (knowledge, value, satisfaction, and error) to the endogenous, or response, variable (performance). Note: Endogenous variables have at least one single-headed path pointing toward them. Exogenous variables, in contrast, send out only single-headed paths but do not receive any. 70 Example 4 E Draw three double-headed arrows that connect the observed exogenous variables (knowledge, satisfaction, and value). Your path diagram should look like this: Identification In this example, it is impossible to estimate the regression weight for the regression of performance on error, and, at the same time, estimate the variance of error. It is like having someone tell you, “I bought $5 worth of widgets,” and attempting to infer both the price of each widget and the number of widgets purchased. There is just not enough information. You can solve this identification problem by fixing either the regression weight applied to error in predicting performance, or the variance of the error variable itself, at an arbitrary, nonzero value. Let’s fix the regression weight at 1. This will yield the same estimates as conventional linear regression. Fixing Regression Weights E Right-click the arrow that points from error to performance and choose Object Properties from the pop-up menu. E Click the Parameters tab. E Type 1 in the Regression weight box. 71 Conventional Linear Regression Setting a regression weight equal to 1 for every error variable can be tedious. Fortunately, Amos Graphics provides a default solution that works well in most cases. E Click the Add a unique variable to an existing variable button. E Click an endogenous variable. Amos automatically attaches an error variable to it, complete with a fixed regression weight of 1. Clicking the endogenous variable repeatedly changes the position of the error variable. 72 Example 4 Viewing the Text Output Here are the maximum likelihood estimates: Amos does not display the path performance <— error because its value is fixed at the default value of 1. You may wonder how much the other estimates would be affected if a different constant had been chosen. It turns out that only the variance estimate for error is affected by such a change. The following table shows the variance estimate that results from various choices for the performance <— error regression weight. Fixed regression weight Estimated variance of error 0.5 0.707 1.0 1.414 2.0 0.050 0.025 0.0125 0.00625 0.00313 Suppose you fixed the path coefficient at 2 instead of 1. Then the variance estimate would be divided by a factor of 4. You can extrapolate the rule that multiplying the path coefficient by a fixed factor goes along with dividing the error variance by the square 73 Conventional Linear Regression of the same factor. Extending this, the product of the squared regression weight and the error variance is always a constant. This is what we mean when we say the regression weight (together with the error variance) is unidentified. If you assign a value to one of them, the other can be estimated, but they cannot both be estimated at the same time. The identifiability problem just discussed arises from the fact that the variance of a variable, and any regression weights associated with it, depends on the units in which the variable is measured. Since error is an unobserved variable, there is no natural way to specify a measurement unit for it. Assigning an arbitrary value to a regression weight associated with error can be thought of as a way of indirectly choosing a unit of measurement for error. Every unobserved variable presents this identifiability problem, which must be resolved by imposing some constraint that determines its unit of measurement. Changing the scale unit of the unobserved error variable does not change the overall model fit. In all the analyses, you get: Chi-square = 0.00 Degrees of freedom = 0 Probability level cannot be computed There are four sample variances and six sample covariances, for a total of 10 sample moments. There are three regression paths, four model variances, and three model covariances, for a total of 10 parameters that must be estimated. Hence, the model has zero degrees of freedom. Such a model is often called saturated or just-identified. The standardized coefficient estimates are as follows: 74 Example 4 The standardized regression weights and the correlations are independent of the units in which all variables are measured; therefore, they are not affected by the choice of identification constraints. Squared multiple correlations are also independent of units of measurement. Amos displays a squared multiple correlation for each endogenous variable. Note: The squared multiple correlation of a variable is the proportion of its variance that is accounted for by its predictors. In the present example, knowledge, value, and satisfaction account for 40% of the variance of performance. Viewing Graphics Output The following path diagram output shows unstandardized values: 75 Conventional Linear Regression Here is the standardized solution: Viewing Additional Text Output E In the tree diagram in the upper left pane of the Amos Output window, click Variable Summary. 76 Example 4 Endogenous variables are those that have single-headed arrows pointing to them; they depend on other variables. Exogenous variables are those that do not have singleheaded arrows pointing to them; they do not depend on other variables. Inspecting the preceding list will help you catch the most common (and insidious) errors in an input file: typing errors. If you try to type performance twice but unintentionally misspell it as preformance one of those times, both versions will appear on the list. E Now click Notes for Model in the upper left pane of the Amos Output window. The following output indicates that there are no feedback loops in the path diagram: Notes for Group (Group number 1) The model is recursive. Later you will see path diagrams where you can pick a variable and, by tracing along the single-headed arrows, follow a path that leads back to the same variable. Note: Path diagrams that have feedback loops are called nonrecursive. Those that do not are called recursive. 77 Conventional Linear Regression Modeling in VB.NET The model in this example consists of a single regression equation. Each single-headed arrow in the path diagram represents a regression weight. Here is a program for estimating those regression weights: The four lines that come after Sem.BeginGroup correspond to the single-headed arrows in the Amos Graphics path diagram. The (1) in the last AStructure line fixes the error regression weight at a constant 1. Assumptions about Correlations among Exogenous Variables When executing a program, Amos makes assumptions about the correlations among exogenous variables that are not made in Amos Graphics. These assumptions simplify 78 Example 4 the specification of many models, especially models that have parameters. The differences between specifying a model in Amos Graphics and specifying one programmatically are as follows: Amos Graphics is entirely WYSIWYG (What You See Is What You Get). If you draw a two-headed arrow (without constraints) between two exogenous variables, Amos Graphics will estimate their covariance. If two exogenous variables are not connected by a double-headed arrow, Amos Graphics will assume that the variables are uncorrelated. The default assumptions in an Amos program are: Unique variables (unobserved, exogenous variables that affect only one other variable) are assumed to be uncorrelated with each other and with all other exogenous variables. Exogenous variables other than unique variables are assumed to be correlated among themselves. In Amos programs, these defaults reflect standard assumptions of conventional linear regression analysis. Thus, in this example, the program assumes that the predictors, knowledge, value, and satisfaction, are correlated and that error is uncorrelated with the predictors. Equation Format for the AStructure Method The AStructure method permits model specification in equation format. For instance, the single Sem.AStructure statement in the following program describes the same model as the program on p. 77 but in a single line. This program is saved under the name Ex04-eq.vb in the Examples directory. 79 Conventional Linear Regression Note that in the AStructure line above, each predictor variable (on the right side of the equation) is associated with a regression weight to be estimated. We could make these regression weights explicit through the use of empty parentheses as follows: Sem.AStructure("performance = ()knowledge + ()value + ()satisfaction + error(1)") The empty parentheses are optional. By default, Amos will automatically estimate a regression weight for each predictor. Example 5 Unobserved Variables Introduction This example demonstrates a regression analysis with unobserved variables. About the Data The variables in the previous example were surely unreliable to some degree. The fact that the reliability of performance is unknown presents a minor problem when it comes to interpreting the fact that the predictors account for only 39.9% of the variance of performance. If the test were extremely unreliable, that fact in itself would explain why the performance score could not be predicted accurately. Unreliability of the predictors, on the other hand, presents a more serious problem because it can lead to biased estimates of regression weights. The present example, based on Rock, et al. (1977), will assess the reliabilities of the four tests included in the previous analysis. It will also obtain estimates of regression weights for perfectly reliable, hypothetical versions of the four tests. Rock, et al. re-examined the data of Warren, White, and Fuller (1974) that were discussed in the previous example. This time, each test was randomly split into two halves, and each half was scored separately. 81 82 Example 5 Here is a list of the input variables: Variable name Description 1performance 2performance 1knowledge 2knowledge 1value 2value 1satisfaction 2satisfaction past_training 12-item subtest of Role Performance 12-item subtest of Role Performance 13-item subtest of Knowledge 13-item subtest of Knowledge 15-item subtest of Value Orientation 15-item subtest of Value Orientation 5-item subtest of Role Satisfaction 6-item subtest of Role Satisfaction degree of formal education For this example, we will use a Lotus data file, Warren9v.wk1, to obtain the sample variances and covariances of these subtests. The sample means that appear in the file will not be used in this example. Statistics on formal education (past_training) are present in the file, but they also will not enter into the present analysis. The following is a portion of the dataset: 83 Unobserved Variables Model A The following path diagram presents a model for the eight subtests: error3 1 1knowledge 1 knowledge error4 1 2knowledge error9 1 error5 1 1value 1 1 value error6 error7 1 1 1 error1 performance 2value 1satisfaction 1performance 2performance 1 error2 1 satisfaction error8 1 2satisfaction Example 5: Model A Regression with unobserved variables Job performance of farm managers Warren, White and Fuller (1974) Standardized estimates Four ellipses in the figure are labeled knowledge, value, satisfaction, and performance. They represent unobserved variables that are indirectly measured by the eight split-half tests. Measurement Model The portion of the model that specifies how the observed variables depend on the unobserved, or latent, variables is sometimes called the measurement model. The current model has four distinct measurement submodels. 84 Example 5 error3 1 1knowledge 1 knowledge error4 error5 1 2knowledge 1 1value 1 1 value error6 error7 1 1 1 error1 performance 2performance 2value 1satisfaction 1performance 1 error2 1 satisfaction error8 1 2satisfaction Consider, for instance, the knowledge submodel: The scores of the two split-half subtests, 1knowledge and 2knowledge, are hypothesized to depend on the single underlying, but not directly observed variable, knowledge. According to the model, scores on the two subtests may still disagree, owing to the influence of error3 and error4, which represent errors of measurement in the two subtests. 1knowledge and 2knowledge are called indicators of the latent variable knowledge. The measurement model for knowledge forms a pattern that is repeated three more times in the path diagram shown above. Structural Model The portion of the model that specifies how the latent variables are related to each other is sometimes called the structural model. 85 Unobserved Variables knowledge error9 1 value performance satisfaction The structural part of the current model is the same as the one in Example 4. It is only in the measurement model that this example differs from the one in Example 4. Identification With 13 unobserved variables in this model, it is certainly not identified. It will be necessary to fix the unit of measurement of each unobserved variable by suitable constraints on the parameters. This can be done by repeating 13 times the trick that was used for the single unobserved variable in Example 4: Find a single-headed arrow leading away from each unobserved variable in the path diagram, and fix the corresponding regression weight to an arbitrary value such as 1. If there is more than one single-headed arrow leading away from an unobserved variable, any one of them will do. The path diagram for “Model A” on p. 83 shows one satisfactory choice of identifiability constraints. Specifying the Model Because the path diagram is wider than it is tall, you may want to change the shape of the drawing area so that it fits the path diagram better. By default, the drawing area in Amos is taller than it is wide so that it is suitable for printing in portrait mode. 86 Example 5 Changing the Orientation of the Drawing Area E From the menus, choose View > Interface Properties. E In the Interface Properties dialog box, click the Page Layout tab. E Set Paper Size to one of the “Landscape” paper sizes, such as Landscape - A4. E Click Apply. 87 Unobserved Variables Creating the Path Diagram Now you are ready to draw the model as shown in the path diagram on page 83. There are a number of ways to do this. One is to start by drawing the measurement model first. Here, we draw the measurement model for one of the latent variables, knowledge, and then use it as a pattern for the other three. E Draw an ellipse for the unobserved variable knowledge. E From the menus, choose Diagram > Draw Indicator Variable. E Click twice inside the ellipse. Each click creates one indicator variable for knowledge: As you can see, with the Draw indicator variable button enabled, you can click multiple times on an unobserved variable to create multiple indicators, complete with unique or error variables. Amos Graphics maintains suitable spacing among the indicators and inserts identification constraints automatically. 88 Example 5 Rotating Indicators The indicators appear by default above the knowledge ellipse, but you can change their location. E From the menus, choose Edit > Rotate. E Click the knowledge ellipse. Each time you click the knowledge ellipse, its indicators rotate 90° clockwise. If you click the ellipse three times, its indicators will look like this: Duplicating Measurement Models The next step is to create measurement models for value and satisfaction. E From the menus, choose Edit > Select All. The measurement model turns blue. E From the menus, choose Edit > Duplicate. E Click any part of the measurement model, and drag a copy to beneath the original. E Repeat to create a third measurement model above the original. 89 Unobserved Variables Your path diagram should now look like this: E Create a fourth copy for performance, and position it to the right of the original. E From the menus, choose Edit > Reflect. This repositions the two indicators of performance as follows: 90 Example 5 Entering Variable Names E Right-click each object and select Object Properties from the pop-up menu E In the Object Properties dialog box, click the Text tab, and enter a name into the Variable Name text box. Alternatively, you can choose View > Variables in Dataset from the menus and then drag variable names onto objects in the path diagram. Completing the Structural Model There are only a few things left to do to complete the structural model. E Draw the three covariance paths connecting knowledge, value, and satisfaction. E Draw a single-headed arrow from each of the latent predictors, knowledge, value, and satisfaction, to the latent dependent variable, performance. E Add the unobserved variable error9 as a predictor of performance (from the menus, choose Diagram > Draw Unique Variable). Your path diagram should now look like the one on p. 83. The Amos Graphics input file that contains this path diagram is Ex05-a.amw. Results for Model A As an exercise, you might want to confirm the following degrees of freedom calculation: 91 Unobserved Variables The hypothesis that Model A is correct is accepted. Chi-square = 10.335 Degrees of freedom = 14 Probability level = 0.737 The parameter estimates are affected by the identification constraints. 92 Example 5 Standardized estimates, on the other hand, are not affected by the identification constraints. To calculate standardized estimates: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Enable the Standardized estimates check box. 93 Unobserved Variables Viewing the Graphics Output The path diagram with standardized parameter estimates displayed is as follows: error3 error4 error8 .52 value .40 .63 .80 1satisfaction .56 2satisfaction error9 .66 .75 .86 performance .82 -.08 error7 knowledge .62 .06 error6 .56 1value .40 2value Chi-square = 10.335 (14 df) p = .737 .73 .54 error5 .53 1knowledge .38 2knowledge .90 .73 1performance .67 2performance error1 error2 .13 satisfaction .75 Example 5: Model A Regression with unobserved variables Job performance of farm managers Warren, White and Fuller (1974) Standardized estimates The value above performance indicates that pure knowledge, value, and satisfaction account for 66% of the variance of performance. The values displayed above the observed variables are reliability estimates for the eight individual subtests. A formula for the reliability of the original tests (before they were split in half) can be found in Rock et al. (1977) or any book on mental test theory. Model B Assuming that Model A is correct (and there is no evidence to the contrary), consider the additional hypothesis that 1knowledge and 2knowledge are parallel tests. Under the parallel tests hypothesis, the regression of 1knowledge on knowledge should be the same as the regression of 2knowledge on knowledge. Furthermore, the error variables associated with 1knowledge and 2knowledge should have identical variances. Similar consequences flow from the assumption that 1value and 2value are parallel tests, as well as 1performance and 2performance. But it is not altogether reasonable to assume that 1satisfaction and 2satisfaction are parallel. One of the subtests is slightly longer than the other because the original test had an odd number of items and could not be 94 Example 5 split exactly in half. As a result, 2satisfaction is 20% longer than 1satisfaction. Assuming that the tests differ only in length leads to the following conclusions: The regression weight for regressing 2satisfaction on satisfaction should be 1.2 times the weight for regressing 1satisfaction on satisfaction. Given equal variances for error7 and error8, the regression weight for error8 should be 1.2 = 1.095445 times as large as the regression weight for error7. You do not need to redraw the path diagram from scratch in order to impose these parameter constraints. You can take the path diagram that you created for Model A as a starting point and then change the values of two regression weights. Here is the path diagram after those changes: beta error3 beta error4 gamma error5 gamma error6 delta error7 delta error8 1 1knowledge 1 2knowledge 1 1value 1 2value 1 1satisfaction 1 knowledge 1 error9 1 1 value 1 1 alpha 1 1performance 1 2performance 1 performance error1 alpha 1 error2 satisfaction 1.095445 2satisfaction 1.2 Example 5: Model B Parallel tests regression Job performance of farm managers Warren, White and Fuller (1974) Model Specification Results for Model B The additional parameter constraints of Model B result in increased degrees of freedom: 95 Unobserved Variables The chi-square statistic has also increased but not by much. It indicates no significant departure of the data from Model B. Chi-square = 26.967 Degrees of freedom = 22 Probability level = 0.212 If Model B is indeed correct, the associated parameter estimates are to be preferred over those obtained under Model A. The raw parameter estimates will not be presented here because they are affected too much by the choice of identification constraints. However, here are the standardized estimates and the squared multiple correlations: 96 Example 5 Here are the standardized estimates and squared multiple correlations displayed on the path diagram: Chi-square = 26.967 (22 df) p = .212 .44 error3 1knowledge .66 knowledge .44 error4 2knowledge .66 1value error7 1satisfaction value 2satisfaction performance 1performance error1 .70 .84 2performance error2 .11 .79 satisfaction .67 .58 .38 .69 .62 error8 .70 .67 .84 -.08 2value error9 .69 .47 error6 .09 .57 .47 error5 .53 .82 Example 5: Model B Parallel tests regression Job performance of farm managers Warren, White and Fuller (1974) Standardized estimates Testing Model B against Model A Sometimes you may have two alternative models for the same set of data, and you would like to know which model fits the data better. You can perform a direct comparison whenever one of the models can be obtained by placing additional constraints on the parameters of the other. We have such a case here. We obtained Model B by imposing eight additional constraints on the parameters of Model A. Let us say that Model B is the stronger of the two models, in the sense that it represents the stronger hypothesis about the population parameters. (Model A would then be the weaker model). The stronger model will have greater degrees of freedom. The chisquare statistic for the stronger model will be at least as large as the chi-square statistic for the weaker model. A test of the stronger model (Model B) against the weaker one (Model A) can be obtained by subtracting the smaller chi-square statistic from the larger one. In this example, the new statistic is 16.632 (that is, 26.967 – 10.335 ). If the stronger model (Model B) is correctly specified, this statistic will have an approximate chi-square 97 Unobserved Variables distribution with degrees of freedom equal to the difference between the degrees of freedom of the competing models. In this example, the difference in degrees of freedom is 8 (that is, 22 – 14). Model B imposes all of the parameter constraints of Model A, plus an additional 8. In summary, if Model B is correct, the value 16.632 comes from a chi-square distribution with eight degrees of freedom. If only the weaker model (Model A) is correct, and not the stronger model (Model B), the new statistic will tend to be large. Hence, the stronger model (Model B) is to be rejected in favor of the weaker model (Model A) when the new chi-square statistic is unusually large. With eight degrees of freedom, chi-square values greater than 15.507 are significant at the 0.05 level. Based on this test, we reject Model B. What about the earlier conclusion, based on the chi-square value of 26.967 with 22 degrees of freedom, that Model B is correct? The disagreement between the two conclusions can be explained by noting that the two tests differ in their assumptions. The test based on eight degrees of freedom assumes that Model A is correct when testing Model B. The test based on 22 degrees of freedom makes no such assumption about Model A. If you are quite sure that Model A is correct, you should use the test comparing Model B against Model A (the one based here on eight degrees of freedom); otherwise, you should use the test based on 22 degrees of freedom. 98 Example 5 Modeling in VB.NET Model A The following program fits Model A: Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\Warren9v.wk1") Sem.AStructure("1performance <--- performance (1)") Sem.AStructure("2performance <--- performance") Sem.AStructure("1knowledge <--- knowledge (1)") Sem.AStructure("2knowledge <--- knowledge") Sem.AStructure("1value <--- value (1)") Sem.AStructure("2value <--- value") Sem.AStructure("1satisfaction <--- satisfaction (1)") Sem.AStructure("2satisfaction <--- satisfaction") Sem.AStructure("1performance <--- error1 (1)") Sem.AStructure("2performance <--- error2 (1)") Sem.AStructure("1knowledge <--- error3 (1)") Sem.AStructure("2knowledge <--- error4 (1)") Sem.AStructure("1value <--- error5 (1)") Sem.AStructure("2value <--- error6 (1)") Sem.AStructure("1satisfaction <--- error7 (1)") Sem.AStructure("2satisfaction <--- error8 (1)") Sem.AStructure("performance <--- knowledge") Sem.AStructure("performance <--- satisfaction") Sem.AStructure("performance <--- value") Sem.AStructure("performance <--- error9 (1)") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Because of the assumptions that Amos makes about correlations among exogenous variables (discussed in Example 4), the program does not need to indicate that knowledge, value, and satisfaction are allowed to be correlated. It is also not necessary to specify that error1, error2, ... , error9 are uncorrelated among themselves and with every other exogenous variable. 99 Unobserved Variables Model B The following program fits Model B: Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\Warren9v.wk1") Sem.AStructure("1performance <--- performance (1)") Sem.AStructure("2performance <--- performance (1)") Sem.AStructure("1knowledge <--- knowledge (1)") Sem.AStructure("2knowledge <--- knowledge (1)") Sem.AStructure("1value <--- value (1)") Sem.AStructure("2value <--- value (1)") Sem.AStructure("1satisfaction <--- satisfaction (1)") Sem.AStructure("2satisfaction <--- satisfaction (" & CStr(1.2) & ")") Sem.AStructure("performance <--- knowledge") Sem.AStructure("performance <--- value") Sem.AStructure("performance <--- satisfaction") Sem.AStructure("performance <--- error9 (1)") Sem.AStructure("1performance <--- error1 (1)") Sem.AStructure("2performance <--- error2 (1)") Sem.AStructure("1knowledge <--- error3 (1)") Sem.AStructure("2knowledge <--- error4 (1)") Sem.AStructure("1value <--- error5 (1)") Sem.AStructure("2value <--- error6 (1)") Sem.AStructure("1satisfaction <--- error7 (1)") Sem.AStructure("2satisfaction <--- error8 (" & CStr(1.095445) & ")") Sem.AStructure("error1 (alpha)") Sem.AStructure("error2 (alpha)") Sem.AStructure("error8 (delta)") Sem.AStructure("error7 (delta)") Sem.AStructure("error6 (gamma)") Sem.AStructure("error5 (gamma)") Sem.AStructure("error4 (beta)") Sem.AStructure("error3 (beta)") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Example 6 Exploratory Analysis Introduction This example demonstrates structural modeling with time-related latent variables, the use of modification indices and critical ratios in exploratory analyses, how to compare multiple models in a single analysis, and computation of implied moments, factor score weights, total effects, and indirect effects. About the Data Wheaton et al. (1977) reported a longitudinal study of 932 persons over the period from 1966 to 1971. Jöreskog and Sörbom (1984), and others since, have used the Wheaton data to demonstrate analysis of moment structures. Six of Wheaton's measures will be used for this example. Measure Explanation anomia67 anomia71 powles67 powles71 education SEI 1967 score on the anomia scale 1971 anomia score 1967 score on the powerlessness scale 1971 powerlessness score Years of schooling recorded in 1966 Duncan's Socioeconomic Index administered in 1966 Take a look at the sample means, standard deviations, and correlations for these six measures. You will find the following table in the SPSS Statistics file, Wheaton.sav. After reading the data, Amos converts the standard deviations and correlations into 101 102 Example 6 variances and covariances, as needed for the analysis. We will not use the sample means in the analysis. Model A for the Wheaton Data Jöreskog and Sörbom (1984) proposed the model shown on p. 103 for the Wheaton data, referring to it as their Model A. The model asserts that all of the observed variables depend on underlying, unobserved variables. For example, anomia67 and powles67 both depend on the unobserved variable 67_alienation, a hypothetical variable that Jöreskog and Sörbom referred to as alienation. The unobserved variables eps1 and eps2 appear to play the same role as the variables error1 and error2 did in Example 5. However, their interpretation here is different. In Example 5, error1 and error2 had a natural interpretation as errors of measurement. In the present example, since the anomia and powerlessness scales were not designed to measure the same thing, it seems reasonable to believe that differences between them will be due to more than just measurement error. So in this case, eps1 and eps2 should be thought of as representing not only errors of measurement in anomia67 and powles67 but in every other variable that might affect scores on the two tests besides 67_alienation (the one variable that affects them both). Specifying the Model To specify Model A in Amos Graphics, draw the path diagram shown next, or open the example file Ex06–a.amw. Notice that the eight unique variables (delta1, delta2, zeta1, zeta2, and eps1 through eps4) are uncorrelated among themselves and with the three latent variables: ses, 67_alienation, and 71_alienation. 103 Exploratory Analysis eps1 eps2 eps3 eps4 1 1 1 1 anomia67 powles67 1 powles71 1 1 zeta1 anomia71 67 alienation 71 alienation 1 zeta2 ses 1 educatio 1 delta1 SEI 1 delta2 Example 6: Model A Exploratory analysis Wheaton (1977) Model Specification Identification Model A is identified except for the usual problem that the measurement scale of each unobserved variable is indeterminate. The measurement scale of each unobserved variable may be fixed arbitrarily by setting a regression weight to unity (1) for one of the paths that points away from it. The path diagram shows 11 regression weights fixed at unity (1), that is, one constraint for each unobserved variable. These constraints are sufficient to make the model identified. Results of the Analysis The model has 15 parameters to be estimated (6 regression weights and 9 variances). There are 21 sample moments (6 sample variances and 15 covariances). This leaves 6 degrees of freedom. 104 Example 6 The Wheaton data depart significantly from Model A. Chi-square = 71.544 Degrees of freedom = 6 Probability level = 0.000 Dealing with Rejection You have several options when a proposed model has to be rejected on statistical grounds: You can point out that statistical hypothesis testing can be a poor tool for choosing a model. Jöreskog (1967) discussed this issue in the context of factor analysis. It is a widely accepted view that a model can be only an approximation at best, and that, fortunately, a model can be useful without being true. In this view, any model is bound to be rejected on statistical grounds if it is tested with a big enough sample. From this point of view, rejection of a model on purely statistical grounds (particularly with a large sample) is not necessarily a condemnation. You can start from scratch to devise another model to substitute for the rejected one. You can try to modify the rejected model in small ways so that it fits the data better. It is the last tactic that will be demonstrated in this example. The most natural way of modifying a model to make it fit better is to relax some of its assumptions. For example, Model A assumes that eps1 and eps3 are uncorrelated. You could relax this restriction by connecting eps1 and eps3 with a double-headed arrow. The model also specifies that anomia67 does not depend directly on ses. You could remove this assumption by drawing a single-headed arrow from ses to anomia67. Model A does not happen to constrain any parameters to be equal to other parameters, but if such constraints were present, you might consider removing them in hopes of getting a better fit. Of course, you have to be careful when relaxing the assumptions of a model that you do not turn an identified model into an unidentified one. 105 Exploratory Analysis Modification Indices You can test various modifications of a model by carrying out a separate analysis for each potential modification, but this approach is time-consuming. Modification indices allow you to evaluate many potential modifications in a single analysis. They provide suggestions for model modifications that are likely to pay off in smaller chisquare values. Using Modification Indices E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Enable the Modification Indices check box. For this example, leave the Threshold for modification indices set at 4. The following are the modification indices for Model A: 106 Example 6 The column heading M.I. in this table is short for Modification Index. The modification indices produced are those described by Jöreskog and Sörbom (1984). The first modification index listed (5.905) is a conservative estimate of the decrease in chi-square that will occur if eps2 and delta1 are allowed to be correlated. The new chi-square statistic would have 5 ( = 6 – 1 ) degrees of freedom and would be no greater than 65.639 ( 71.544 – 5.905 ). The actual decrease of the chi-square statistic might be much larger than 5.905. The column labeled Par Change gives approximate estimates of how much each parameter would change if it were estimated rather than fixed at 0. Amos estimates that the covariance between eps2 and delta1 would be – 0.424 . Based on the small modification index, it does not look as though much would be gained by allowing eps2 and delta1 to be correlated. Besides, it would be hard to justify this particular modification on theoretical grounds even if it did produce an acceptable fit. Changing the Modification Index Threshold By default, Amos displays only modification indices that are greater than 4, but you can change this threshold. E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Enter a value in the Threshold for modification indices text box. A very small threshold will result in the display of a lot of modification indices that are too small to be of interest. The largest modification index in Model A is 40.911. It indicates that allowing eps1 and eps3 to be correlated will decrease the chi-square statistic by at least 40.911. This is a modification well worth considering because it is quite plausible that these two variables should be correlated. Eps1 represents variability in anomia67 that is not due to variation in 67_alienation. Similarly, eps3 represents variability in anomia71 that is not due to variation in 71_alienation. Anomia67 and anomia71 are scale scores on the same instrument (at different times). If the anomia scale measures something other than alienation, you would expect to find a nonzero correlation between eps1 and eps3. In fact, you would expect the correlation to be positive, which is consistent with the fact that the number in the Par Change column is positive. 107 Exploratory Analysis The theoretical reasons for suspecting that eps1 and eps3 might be correlated apply to eps2 and eps4 as well. The modification indices also suggest allowing eps2 and eps4 to be correlated. However, we will ignore this potential modification and proceed immediately to look at the results of modifying Model A by allowing eps1 and eps3 to be correlated. The new model is Jöreskog and Sörbom’s Model B. Model B for the Wheaton Data You can obtain Model B by starting with the path diagram for Model A and drawing a double-headed arrow between eps1 and eps3. If the new double-headed arrow extends beyond the bounds of the print area, you can use the Shape button to adjust the curvature of the double-headed arrow. You can also use the Move button to reposition the end points of the double-headed arrow. The path diagram for Model B is contained in the file Ex06-b.amw. eps1 eps2 eps3 eps4 1 1 1 1 anomia67 pow les67 1 pow les71 1 1 zeta1 anomia71 67 alienation 71 alienation ses 1 educatio 1 delta1 SEI 1 delta2 Exam ple 6: Model B Exploratory analysis W heaton (1977) Model Specification 1 zeta2 108 Example 6 Text Output The added covariance between eps1 and eps3 decreases the degrees of freedom by 1. The chi-square statistic is reduced by substantially more than the promised 40.911. Chi-square = 6.383 Degrees of freedom = 5 Probability level = 0.271 Model B cannot be rejected. Since the fit of Model B is so good, we will not pursue the possibility, mentioned earlier, of allowing eps2 and eps4 to be correlated. (An argument could be made that a nonzero correlation between eps2 and eps4 should be allowed in order to achieve a symmetry that is lacking in the Model B.) The raw parameter estimates must be interpreted cautiously since they would have been different if different identification constraints had been imposed. 109 Exploratory Analysis Note the large critical ratio associated with the new covariance path. The covariance between eps1 and eps3 is clearly different from 0. This explains the poor fit of Model A, in which that covariance was fixed at 0. Graphics Output for Model B The following path diagram displays the standardized estimates and the squared multiple correlations: .38 eps1 eps2 .76 .57 anomia67 anomia71 .58 67 alienation -.55 .72 .86 71 alienation zeta2 .50 -.20 ses .85 .73 powles71 .79 .87 .31 eps4 .62 powles67 .76 zeta1 eps3 .64 .41 educatio SEI delta1 delta2 Chi-square = 6.38 df = 5 p = .27 Example 6: Model B Exploratory analysis W heaton (1977) Standardized estimates Because the error variables in the model represent more than just measurement error, the squared multiple correlations cannot be interpreted as estimates of reliabilities. Rather, each squared multiple correlation is an estimate of a lower bound on the corresponding reliability. Take education, for example. Ses accounts for 72% of its variance. Because of this, you would estimate its reliability to be at least 0.72. Considering that education is measured in years of schooling, it seems likely that its reliability is much greater. 110 Example 6 Misuse of Modification Indices In trying to improve upon a model, you should not be guided exclusively by modification indices. A modification should be considered only if it makes theoretical or common sense. A slavish reliance on modification indices without such a limitation amounts to sorting through a very large number of potential modifications in search of one that provides a big improvement in fit. Such a strategy is prone, through capitalization on chance, to producing an incorrect (and absurd) model that has an acceptable chi-square value. This issue is discussed by MacCallum (1986) and by MacCallum, Roznowski, and Necowitz (1992). Improving a Model by Adding New Constraints Modification indices suggest ways of improving a model by increasing the number of parameters in such a way that the chi-square statistic falls faster than its degrees of freedom. This device can be misused, but it has a legitimate place in exploratory studies. There is also another trick that can be used to produce a model with a more acceptable chi-square value. This technique introduces additional constraints in such a way as to produce a relatively large increase in degrees of freedom, coupled with a relatively small increase in the chi-square statistic. Many such modifications can be roughly evaluated by looking at the critical ratios in the C.R. column. We have already seen (in Example 1) how a single critical ratio can be used to test the hypothesis that a single population parameter equals 0. However, the critical ratio also has another interpretation. The square of the critical ratio of a parameter is, approximately, the amount by which the chi-square statistic will increase if the analysis is repeated with that parameter fixed at 0. Calculating Critical Ratios If two parameter estimates turn out to be nearly equal, you might be able to improve the chi-square test of fit by postulating a new model where those two parameters are specified to be exactly equal. To assist in locating pairs of parameters that do not differ significantly from each other, Amos provides a critical ratio for every pair of parameters. 111 Exploratory Analysis E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Enable the Critical ratios for differences check box. When Amos calculates critical ratios for parameter differences, it generates names for any parameters that you did not name during model specification. The names are displayed in the text output next to the parameter estimates. Here are the parameter estimates for Model B. The parameter names generated by Amos are in the Label column. 112 Example 6 The parameter names are needed for interpreting the critical ratios in the following table: Critical Ratios for Differences between Parameters (Default model) par_1 par_2 par_3 par_4 par_5 par_6 par_7 par_8 par_9 par_10 par_11 par_12 par_13 par_14 par_15 par_16 par_1 .000 .877 9.883 -4.429 -17.943 -22.343 3.903 8.955 8.364 7.781 11.106 3.826 10.425 4.697 3.393 14.615 par_2 par_3 par_4 par_5 par_6 .000 9.741 -5.931 -16.634 -26.471 3.689 8.866 7.872 8.040 11.705 3.336 9.659 4.906 3.283 14.612 .000 -10.579 -12.284 -12.661 -6.762 1.707 -.714 -2.362 -.186 -5.599 -.621 -4.642 -7.280 14.192 .000 -18.098 -17.300 5.056 9.576 9.256 9.470 11.969 4.998 10.306 6.353 4.019 14.637 .000 -5.115 8.490 10.995 11.311 11.683 14.039 7.698 12.713 8.554 5.508 14.687 .000 10.124 11.797 12.047 12.629 15.431 8.253 13.575 9.602 5.975 14.712 Critical Ratios for Differences between Parameters (Default model) par_7 par_8 par_9 par_10 par_11 par_12 par_13 par_14 par_15 par_16 par_7 .000 7.128 5.388 4.668 9.773 .740 8.318 1.798 1.482 14.563 par_8 par_9 par_10 par_11 par_12 .000 -2.996 -4.112 -2.402 -6.387 -2.695 -5.701 -3.787 14.506 .000 -1.624 .548 -5.254 .169 -3.909 -2.667 14.439 .000 2.308 -3.507 1.554 -2.790 -1.799 14.458 .000 -4.728 -.507 -4.735 -3.672 14.387 .000 5.042 .999 .855 14.544 Critical Ratios for Differences between Parameters (Default model) par_13 par_14 par_15 par_16 par_13 .000 -3.322 -3.199 14.400 par_14 par_15 par_16 .000 .077 14.518 .000 14.293 .000 Ignoring the 0’s down the main diagonal, the table of critical ratios contains 120 entries, one for each pair of parameters. Take the number 0.877 near the upper left corner of the table. This critical ratio is the difference between the parameters labeled 113 Exploratory Analysis par_1 and par_2 divided by the estimated standard error of this difference. These two parameters are the regression weights for powles71 <– 71_alienation and powles67 <– 67_alienation. Under the distribution assumptions stated on p. 35, the critical ratio statistic can be evaluated using a table of the standard normal distribution to test whether the two parameters are equal in the population. Since 0.877 is less in magnitude than 1.96, you would not reject, at the 0.05 level, the hypothesis that the two regression weights are equal in the population. The square of the critical ratio for differences between parameters is approximately the amount by which the chi-square statistic would increase if the two parameters were set equal to each other. Since the square of 0.877 is 0.769, modifying Model B to require that the two regression weights have equal estimates would yield a chi-square value of about 6.383 + 0.769 = 7.172 . The degrees of freedom for the new model would be 6 instead of 5. This would be an improved fit ( p = 0.307 versus p = 0.275 for Model B), but we can do much better than that. Let’s look for the smallest critical ratio. The smallest critical ratio in the table is 0.077, for the parameters labeled par_14 and par_15. These two parameters are the variances of eps4 and delta1. The square of 0.077 is about 0.006. A modification of Model B that assumes eps4 and delta1 to have equal variances will result in a chi-square value that exceeds 6.383 by about 0.006, but with 6 degrees of freedom instead of 5. The associated probability level would be about 0.381. The only problem with this modification is that there does not appear to be any justification for it; that is, there does not appear to be any a priori reason for expecting eps4 and delta1 to have equal variances. We have just been discussing a misuse of the table of critical ratios for differences. However, the table does have a legitimate use in the quick examination of a small number of hypotheses. As an example of the proper use of the table, consider the fact that observations on anomia67 and anomia71 were obtained by using the same instrument on two occasions. The same goes for powles67 and powles71. It is plausible that the tests would behave the same way on the two occasions. The critical ratios for differences are consistent with this hypothesis. The variances of eps1 and eps3 (par_11 and par_13) differ with a critical ratio of –0.51. The variances of eps2 and eps4 (par_12 and par_14) differ with a critical ratio of 1.00. The weights for the regression of powerlessness on alienation (par_1 and par_2) differ with a critical ratio of 0.88. None of these differences, taken individually, is significant at any conventional significance level. This suggests that it may be worthwhile to investigate more carefully a model in which all three differences are constrained to be 0. We will call this new model Model C. 114 Example 6 Model C for the Wheaton Data Here is the path diagram for Model C from the file Ex06–c.amw: var_a var_p eps2 eps3 eps4 1 1 1 1 anomia67 powles67 path_p 1 zeta1 var_a var_p eps1 1 67 alienation anomia71 powles71 1 71 alienation path_p 1 zeta2 ses 1 educatio 1 delta1 SEI 1 delta2 Example 6: Model C Exploratory analysis Wheaton (1977) Model Specification The label path_p requires the regression weight for predicting powerlessness from alienation to be the same in 1971 as it is in 1967. The label var_a is used to specify that eps1 and eps3 have the same variance. The label var_p is used to specify that eps2 and eps4 have the same variance. Results for Model C Model C has three more degrees of freedom than Model B: 115 Exploratory Analysis Testing Model C As expected, Model C has an acceptable fit, with a higher probability level than Model B: Chi-square = 7.501 Degrees of freedom = 8 Probability level = 0.484 You can test Model C against Model B by examining the difference in chi-square values ( 7.501 – 6.383 = 1.118 ) and the difference in degrees of freedom ( 8 – 5 = 3 ). A chi-square value of 1.118 with 3 degrees of freedom is not significant. Parameter Estimates for Model C The standardized estimates for Model C are as follows: .38 eps1 eps2 .74 .58 anomia67 anomia71 .58 67 alienation 71 alienation -.19 Chi-square = 7.50 df = 8 p = .48 ses .71 .87 .50 -.56 .85 .76 powles71 .78 .86 .31 eps4 .60 powles67 .76 zeta1 eps3 .64 .41 educatio SEI delta1 delta2 Example 6: Model C Exploratory analysis Wheaton (1977) Standardized estimates zeta2 116 Example 6 Multiple Models in a Single Analysis Amos allows for the fitting of multiple models in a single analysis. This allows Amos to summarize the results for all models in a single table. It also allows Amos to perform a chi-square test for nested model comparisons. In this example, Models A, B, and C can be fitted in a single analysis by noting that Models A and C can each be obtained by constraining the parameters of Model B. In the following path diagram from the file Ex06-all.amw, parameters of Model B that need to be constrained to yield Model A or Model C have been assigned names: cov1 var_a67 var_p71 eps2 eps3 eps4 1 1 1 1 anom ia67 pow les67 1 zeta1 var_a71 var_p67 eps1 b_pow67 1 anom ia71 pow les71 1 b_pow 71 67 71 alienation alienation 1 zeta2 ses 1 educatio 1 delta1 SEI 1 delta2 E xam ple 6: M ost G eneral M odel E xploratory A nalysis W heaton (1977) M odel S pecification Seven parameters in this path diagram are named: var_a67, var_p67, var_a71, var_p71, b_pow67, b_pow71, and cov1. The naming of the parameters does not constrain any of the parameters to be equal to each other because no two parameters were given the same name. However, having names for the variables allows constraining them in various ways, as will now be demonstrated. 117 Exploratory Analysis Using the parameter names just introduced, Model A can be obtained from the most general model (Model B) by requiring cov1 = 0. E In the Models panel to the left of the path diagram, double-click Default Model. The Manage Models dialog box appears. E In the Model Name text box, type Model A: No Autocorrelation. E Double-click cov1 in the left panel. Notice that cov1 appears in the Parameter Constraints box. E Type cov1 =0 in the Parameter Constraints box. 118 Example 6 This completes the specification of Model A. E In the Manage Models dialog box, click New. E In the Model Name text box, type Model B: Most General. Model B has no constraints other than those in the path diagram, so you can proceed immediately to Model C. E Click New. E In the Model Name text box, type Model C: Time-Invariance. E In the Parameter Constraints box, type: b_pow67 = b_pow71 var_a67 = var_a71 var_p67 = var_p71 For the sake of completeness, a fourth model (Model D) will be introduced, combining the single constraint of Model A with the three constraints of Model C. Model D can be specified without retyping the constraints. E Click New. E In the Model Name text box, type Model D: A and C Combined. 119 Exploratory Analysis E In the Parameter Constraints box, type: Model A: No Autocorrelation Model C: Time-Invariance These lines tell Amos that Model D incorporates the constraints of both Model A and Model C. Now that we have set up the parameter constraints for all four models, the final step is to perform the analysis and view the output. Output from Multiple Models Viewing Graphics Output for Individual Models When you are fitting multiple models, use the Models panel to display the diagrams from different models. The Models panel is just to the left of the path diagram. To display a model, click its name. Viewing Fit Statistics for All Four Models E From the menus, choose View > Text Output. E In the tree diagram in the upper left pane of the Amos Output window, click Model Fit. The following is the portion of the output that shows the chi-square statistic: 120 Example 6 The CMIN column contains the minimum discrepancy for each model. In the case of maximum likelihood estimation (the default), the CMIN column contains the chi-square statistic. The p column contains the corresponding upper-tail probability for testing each model. For nested pairs of models, Amos provides tables of model comparisons, complete with chi-square difference tests and their associated p values. E In the tree diagram in the upper left pane of the Amos Output window, click Model Comparison. This table shows, for example, that Model C does not fit significantly worse than Model B ( p = 0.773 ). In other words, assuming that Model B is correct, you would accept the hypothesis of time invariance. On the other hand, the table shows that Model A fits significantly worse than Model B ( p = 0.000 ). In other words, assuming that Model B is correct, you would reject the hypothesis that eps1 and eps3 are uncorrelated. 121 Exploratory Analysis Obtaining Optional Output The variances and covariances among the observed variables can be estimated under the assumption that Model C is correct. E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Select Implied moments (a check mark appears next to it). E To obtain the implied variances and covariances for all the variables in the model except error variables, select All implied moments. For Model C, selecting All implied moments gives the following output: The implied variances and covariances for the observed variables are not the same as the sample variances and covariances. As estimates of the corresponding population values, the implied variances and covariances are superior to the sample variances and covariances (assuming that Model C is correct). If you enable both the Standardized estimates and All implied moments check boxes in the Analysis Properties dialog box, Amos will give you the implied correlation matrix of all variables as well as the implied covariance matrix. 122 Example 6 The matrix of implied covariances for all variables in the model can be used to carry out a regression of the unobserved variables on the observed variables. The resulting regression weight estimates can be obtained from Amos by enabling the Factor score weights check box. Here are the estimated factor score weights for Model C: The table of factor score weights has a separate row for each unobserved variable, and a separate column for each observed variable. Suppose you wanted to estimate the ses score of an individual. You would compute a weighted sum of the individual’s six observed scores using the six weights in the ses row of the table. Obtaining Tables of Indirect, Direct, and Total Effects The coefficients associated with the single-headed arrows in a path diagram are sometimes called direct effects. In Model C, for example, ses has a direct effect on 71_alienation. In turn, 71_alienation has a direct effect on powles71. Ses is then said to have an indirect effect (through the intermediary of 71_alienation) on powles71. E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Enable the Indirect, direct & total effects check box. For Model C, the output includes the following table of total effects: 123 Exploratory Analysis The first row of the table indicates that 67_alienation depends, directly or indirectly, on ses only. The total effect of ses on 67_alienation is –0.56. The fact that the effect is negative means that, all other things being equal, relatively high ses scores are associated with relatively low 67_alienation scores. Looking in the fifth row of the table, powles71 depends, directly or indirectly, on ses, 67_alienation, and 71_alienation. Low scores on ses, high scores on 67_alienation, and high scores on 71_alienation are associated with high scores on powles71. See Fox (1980) for more help in interpreting direct, indirect, and total effects. Modeling in VB.NET Model A The following program fits Model A. It is saved as Ex06–a.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Mods(4) Sem.BeginGroup(Sem.AmosDir & "Examples\Wheaton.sav") Sem.AStructure("anomia67 <--- 67_alienation (1)") Sem.AStructure("anomia67 <--- eps1 (1)") Sem.AStructure("powles67 <--- 67_alienation") Sem.AStructure("powles67 <--- eps2 (1)") Sem.AStructure("anomia71 <--- 71_alienation (1)") Sem.AStructure("anomia71 <--- eps3 (1)") Sem.AStructure("powles71 <--- 71_alienation") Sem.AStructure("powles71 <--- eps4 (1)") Sem.AStructure("67_alienation <--- ses") Sem.AStructure("67_alienation <--- zeta1 (1)") Sem.AStructure("71_alienation <--- 67_alienation") Sem.AStructure("71_alienation <--- ses") Sem.AStructure("71_alienation <--- zeta2 (1)") Sem.AStructure("educatio <--- ses (1)") Sem.AStructure("educatio <--- delta1 (1)") Sem.AStructure("SEI <--- ses") Sem.AStructure("SEI <--- delta2 (1)") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 124 Example 6 Model B The following program fits Model B. It is saved as Ex06–b.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.Crdiff() Sem.BeginGroup(Sem.AmosDir & "Examples\Wheaton.sav") Sem.AStructure("anomia67 <--- 67_alienation (1)") Sem.AStructure("anomia67 <--- eps1 (1)") Sem.AStructure("powles67 <--- 67_alienation") Sem.AStructure("powles67 <--- eps2 (1)") Sem.AStructure("anomia71 <--- 71_alienation (1)") Sem.AStructure("anomia71 <--- eps3 (1)") Sem.AStructure("powles71 <--- 71_alienation") Sem.AStructure("powles71 <--- eps4 (1)") Sem.AStructure("67_alienation <--- ses") Sem.AStructure("67_alienation <--- zeta1 (1)") Sem.AStructure("71_alienation <--- 67_alienation") Sem.AStructure("71_alienation <--- ses") Sem.AStructure("71_alienation <--- zeta2 (1)") Sem.AStructure("educatio <--- ses (1)") Sem.AStructure("educatio <--- delta1 (1)") Sem.AStructure("SEI <--- ses") Sem.AStructure("SEI <--- delta2 (1)") Sem.AStructure("eps1 <---> eps3") ' Autocorrelated residual Sem.FitModel() Finally Sem.Dispose() End Try End Sub 125 Exploratory Analysis Model C The following program fits Model C. It is saved as Ex06–c.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.AllImpliedMoments() Sem.FactorScoreWeights() Sem.TotalEffects() Sem.BeginGroup(Sem.AmosDir & "Examples\Wheaton.sav") Sem.AStructure("anomia67 <--- 67_alienation (1)") Sem.AStructure("anomia67 <--- eps1 (1)") Sem.AStructure("powles67 <--- 67_alienation (path_p)") Sem.AStructure("powles67 <--- eps2 (1)") Sem.AStructure("anomia71 <--- 71_alienation (1)") Sem.AStructure("anomia71 <--- eps3 (1)") Sem.AStructure("powles71 <--- 71_alienation (path_p)") Sem.AStructure("powles71 <--- eps4 (1)") Sem.AStructure("67_alienation <--- ses") Sem.AStructure("67_alienation <--- zeta1 (1)") Sem.AStructure("71_alienation <--- 67_alienation") Sem.AStructure("71_alienation <--- ses") Sem.AStructure("71_alienation <--- zeta2 (1)") Sem.AStructure("educatio <--- ses (1)") Sem.AStructure("educatio <--- delta1 (1)") Sem.AStructure("SEI <--- ses") Sem.AStructure("SEI <--- delta2 (1)") Sem.AStructure("eps3 <--> eps1") Sem.AStructure("eps1 (var_a)") Sem.AStructure("eps2 (var_p)") Sem.AStructure("eps3 (var_a)") Sem.AStructure("eps4 (var_p)") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 126 Example 6 Fitting Multiple Models To fit all three models, A, B, and C in a single analysis, start with the following program, which assigns unique names to some parameters: Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.AllImpliedMoments() Sem.TotalEffects() Sem.FactorScoreWeights() Sem.Mods(4) Sem.Crdiff() Sem.BeginGroup(Sem.AmosDir & "Examples\Wheaton.sav") Sem.AStructure("anomia67 <--- 67_alienation (1)") Sem.AStructure("anomia67 <--- eps1 (1)") Sem.AStructure("powles67 <--- 67_alienation (b_pow67)") Sem.AStructure("powles67 <--- eps2 (1)") Sem.AStructure("anomia71 <--- 71_alienation (1)") Sem.AStructure("anomia71 <--- eps3 (1)") Sem.AStructure("powles71 <--- 71_alienation (b_pow71)") Sem.AStructure("powles71 <--- eps4 (1)") Sem.AStructure("67_alienation <--- ses") Sem.AStructure("67_alienation <--- zeta1 (1)") Sem.AStructure("71_alienation <--- 67_alienation") Sem.AStructure("71_alienation <--- ses") Sem.AStructure("71_alienation <--- zeta2 (1)") Sem.AStructure("educatio <--- ses (1)") Sem.AStructure("educatio <--- delta1 (1)") Sem.AStructure("SEI <--- ses") Sem.AStructure("SEI <--- delta2 (1)") Sem.AStructure("eps3 <--> eps1 (cov1)") Sem.AStructure("eps1 (var_a67)") Sem.AStructure("eps2 (var_p67)") Sem.AStructure("eps3 (var_a71)") Sem.AStructure("eps4 (var_p71)") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Since the parameter names are unique, naming the parameters does not constrain them. However, naming the parameters does permit imposing constraints through the use of the Model method. Adding the following lines to the program, in place of the 127 Exploratory Analysis Sem.FitModel line, will fit the model four times, each time with a different set of parameter constraints: Sem.Model("Model A: No Autocorrelation", "cov1 = 0") Sem.Model("Model B: Most General", "") Sem.Model("Model C: Time-Invariance", _ "b_pow67 = b_pow71;var_a67 = var_a71;var_p67 = var_p71") Sem.Model("Model D: A and C Combined", _ "Model A: No Autocorrelation;Model C: Time-Invariance") Sem.FitAllModels() The first line defines a version of the model called Model A: No Autocorrelation in which the parameter called cov1 is fixed at 0. The second line defines a version of the model called Model B: Most General in which no additional constraints are imposed on the model parameters. The third use of the Model method defines a version of the model called Model C: Time-Invariance that imposes the equality constraints: b_pow67 = b_pow71 var_a67 = var_a71 var_p67 = var_p71 The fourth use of the Model method defines a version of the model called Model D: A and C Combined that combines the single constraint of Model A with the three constraints of Model C. The last model specification (Model D) shows how earlier model specifications can be used in the definition of a new, more constrained model. In order to fit all models at once, the FitAllModels method has to be used instead of FitModel. The FitModel method fits a single model only. By default, it fits the first model, which in this example is Model A. You could use FitModel(1) to fit the first model, or FitModel(2) to fit the second model. You could also use, say, FitModel(“Model C: Time-Invariance”) to fit Model C. Ex06–all.vb contains a program that fits all four models. Example 7 A Nonrecursive Model Introduction This example demonstrates structural equation modeling with a nonrecursive model. About the Data Felson and Bohrnstedt (1979) studied 209 girls from sixth through eighth grade. They made measurements on the following variables: Variables academic athletic attract GPA height weight rating Description Perceived academic ability, a sociometric measure based on the item Name who you think are your three smartest classmates Perceived athletic ability, a sociometric measure based on the item Name three of your classmates who you think are best at sports Perceived attractiveness, a sociometric measure based on the item Name the three girls in the classroom who you think are the most good-looking (excluding yourself) Grade point average Deviation of height from the mean height for a subject’s grade and sex Weight, adjusted for height Ratings of physical attractiveness obtained by having children from another city rate photographs of the subjects 129 130 Example 7 Sample correlations, means, and standard deviations for these six variables are contained in the SPSS Statistics file, Fels_fem.sav. Here is the data file as it appears in the SPSS Statistics Data Editor: The sample means are not used in this example. Felson and Bohrnstedt’s Model Felson and Bohrnstedt proposed the following model for six of their seven measured variables: GPA academic 1 error1 height weight attract 1 error2 rating Example 7 A nonrecursive model Felson and Bohrnstedt (1979) (Female subjects) Model Specification 131 A Nonrecursive Model Perceived academic performance is modeled as a function of GPA and perceived attractiveness (attract). Perceived attractiveness, in turn, is modeled as a function of perceived academic performance, height, weight, and the rating of attractiveness by children from another city. Particularly noteworthy in this model is that perceived academic ability depends on perceived attractiveness, and vice versa. A model with these feedback loops is called nonrecursive (the terms recursive and nonrecursive were defined earlier in Example 4). The current model is nonrecursive because it is possible to trace a path from attract to academic and back. This path diagram is saved in the file Ex07.amw. Model Identification We need to establish measurement units for the two unobserved variables, error1 and error2, for identification purposes. The preceding path diagram shows two regression weights fixed at 1. These two constraints are enough to make the model identified. Results of the Analysis Text Output The model has two degrees of freedom, and there is no significant evidence that the model is wrong. Chi-square = 2.761 Degrees of freedom = 2 Probability level = 0.251 There is, however, some evidence that the model is unnecessarily complicated, as indicated by some exceptionally small critical ratios in the text output. 132 Example 7 Regression Weights: (Group number 1 - Default model) academic <--- GPA attract <--- height attract <--- weight attract <--- rating attract <--- academic academic <--- attract Estimate .023 .000 -.002 .176 1.607 -.002 S.E. .004 .010 .001 .027 .349 .051 C.R. P 6.241 *** .050 .960 -1.321 .186 6.444 *** 4.599 *** -.039 .969 Label Covariances: (Group number 1 - Default model) GPA <--> rating height <--> rating GPA <--> weight GPA <--> height height <--> weight weight <--> rating error1 <--> error2 Estimate .526 -.468 -6.710 1.819 19.024 -5.243 -.004 S.E. .246 .205 4.676 .712 4.098 1.395 .010 C.R. 2.139 -2.279 -1.435 2.555 4.643 -3.759 -.382 P .032 .023 .151 .011 *** *** .702 Label Variances: (Group number 1 - Default model) GPA height weight rating error1 error2 Estimate 12.122 8.428 371.476 1.015 .019 .143 S.E. 1.189 .826 36.426 .100 .003 .014 C.R. 10.198 10.198 10.198 10.198 5.747 9.974 P *** *** *** *** *** *** Label Judging by the critical ratios, you see that each of these three null hypotheses would be accepted at conventional significance levels: Perceived attractiveness does not depend on height (critical ratio = 0.050). Perceived academic ability does not depend on perceived attractiveness (critical ratio = –0.039). The residual variables error1 and error2 are uncorrelated (critical ratio = –0.382). Strictly speaking, you cannot use the critical ratios to test all three hypotheses at once. Instead, you would have to construct a model that incorporates all three constraints simultaneously. This idea will not be pursued here. The raw parameter estimates reported above are not affected by the identification constraints (except for the variances of error1 and error2). They are, of course, affected by the units in which the observed variables are measured. By contrast, the standardized estimates are independent of all units of measurement. 133 A Nonrecursive Model Obtaining Standardized Estimates Before you perform the analysis, do the following: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Select Standardized estimates (a check mark appears next to it). E Close the dialog box. Standardized Regression Weights: (Group number 1 Default model) academic <--attract <--attract <--attract <--attract <--academic <--- GPA height weight rating academic attract Estimate .492 .003 -.078 .363 .525 -.006 Correlations: (Group number 1 - Default model) GPA <--> height <--> GPA <--> GPA <--> height <--> weight <--> error1 <--> rating rating weight height weight rating error2 Estimate .150 -.160 -.100 .180 .340 -.270 -.076 Here it can be seen that the regression weights and the correlation that we discovered earlier to be statistically insignificant are also, speaking descriptively, small. Obtaining Squared Multiple Correlations The squared multiple correlations, like the standardized estimates, are independent of units of measurement. To obtain squared multiple correlations, do the following before you perform the analysis: E From the menus, choose View > Analysis Properties. 134 Example 7 E In the Analysis Properties dialog box, click the Output tab. E Select Squared multiple correlations (a check mark appears next to it). E Close the dialog box. Squared Multiple Correlations: (Group number 1 Default model) Estimate .402 .236 attract academic The squared multiple correlations show that the two endogenous variables in this model are not predicted very accurately by the other variables in the model. This goes to show that the chi-square test of fit is not a measure of accuracy of prediction. Graphics Output Here is the path diagram output displaying standardized estimates and squared multiple correlations: Chi-square = 2.761 (2 df) p = .251 .24 GPA .49 academic error1 .18 -.10 .52 -.01 -.08 0 .0 height .34 -.16 -.08 attract error2 -.27 rating .3 6 .15 .40 weight Example 7 A nonrecursive model Felson and Bohrnstedt (1979) (Female subjects) Standardized estimates 135 A Nonrecursive Model Stability Index The existence of feedback loops in a nonrecursive model permits certain problems to arise that cannot occur in recursive models. In the present model, attractiveness depends on perceived academic ability, which in turn depends on attractiveness, which depends on perceived academic ability, and so on. This appears to be an infinite regress, and it is. One wonders whether this infinite sequence of linear dependencies can actually result in well-defined relationships among attractiveness, academic ability, and the other variables of the model. The answer is that they might, and then again they might not. It all depends on the regression weights. For some values of the regression weights, the infinite sequence of linear dependencies will converge to a set of well-defined relationships. In this case, the system of linear dependencies is called stable; otherwise, it is called unstable. Note: You cannot tell whether a linear system is stable by looking at the path diagram. You need to know the regression weights. Amos cannot know what the regression weights are in the population, but it estimates them and, from the estimates, it computes a stability index (Fox, 1980; Bentler and Freeman, 1983). If the stability index falls between –1 and +1, the system is stable; otherwise, it is unstable. In the present example, the system is stable. Stability index for the following variables is 0.003: attract academic To view the stability index for a nonrecursive model: E Click Notes for Group/Model in the tree diagram in the upper left pane of the Amos Output window. An unstable system (with a stability index equal to or greater than 1) is impossible, in the same sense that, for example, a negative variance is impossible. If you do obtain a stability index of 1 (or greater than 1), this implies that your model is wrong or that your sample size is too small to provide accurate estimates of the regression weights. If there are several loops in a path diagram, Amos computes a stability index for each one. If any one of the stability indices equals or exceeds 1, the linear system is unstable. 136 Example 7 Modeling in VB.NET The following program fits the model of this example. It is saved in the file Ex07.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\Fels_fem.sav") Sem.AStructure("academic <--- GPA") Sem.AStructure("academic <--- attract") Sem.AStructure("academic <--- error1 (1)") Sem.AStructure("attract <--- height") Sem.AStructure("attract <--- weight") Sem.AStructure("attract <--- rating") Sem.AStructure("attract <--- academic") Sem.AStructure("attract <--- error2 (1)") Sem.AStructure("error2 <--> error1") Sem.FitModel() Finally Sem.Dispose() End Try End Sub The final AStructure line is essential to Felson and Bohrnstedt’s model. Without it, Amos would assume that error1 and error2 are uncorrelated. You can specify the same model in an equation-like format as follows: Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\Fels_fem.sav") Sem.AStructure("academic = GPA + attract + error1 (1)") Sem.AStructure("attract = height + weight + rating + " _ & "academic + error2 (1)") Sem.AStructure("error2 <--> error1") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Example 8 Factor Analysis Introduction This example demonstrates confirmatory common factor analysis. About the Data Holzinger and Swineford (1939) administered 26 psychological tests to 301 seventhand eighth-grade students in two Chicago schools. In the present example, we use scores obtained by the 73 girls from a single school (the Grant-White school). Here is a summary of the six tests used in this example: Test Explanation visperc cubes lozenges paragraph sentence wordmean Visual perception scores Test of spatial visualization Test of spatial orientation Paragraph comprehension score Sentence completion score Word meaning test score 137 138 Example 8 The file Grnt_fem.sav contains the test scores: A Common Factor Model Consider the following model for the six tests: 1 spatial visperc cubes lozenges 1 verbal paragrap sentence wordmean 1 1 1 1 1 1 err_v err_c err_l err_p err_s err_w Example 8 Factor analysis: Girls' sample Holzinger and Swineford (1939) Model Specification 139 Factor Analysis This model asserts that the first three tests depend on an unobserved variable called spatial. Spatial can be interpreted as an underlying ability (spatial ability) that is not directly observed. According to the model, performance on the first three tests depends on this ability. In addition, performance on each of these tests may depend on something other than spatial ability as well. In the case of visperc, for example, the unique variable err_v is also involved. Err_v represents any and all influences on visperc that are not shown elsewhere in the path diagram. Err_v represents error of measurement in visperc, certainly, but also socioeconomic status, age, physical stamina, vocabulary, and every other trait or ability that might affect scores on visperc but that does not appear elsewhere in the model. The model presented here is a common factor analysis model. In the lingo of common factor analysis, the unobserved variable spatial is called a common factor, and the three unobserved variables, err_v, err_c, and err_l, are called unique factors. The path diagram shows another common factor, verbal, on which the last three tests depend. The path diagram also shows three more unique factors, err_p, err_s, and err_w. The two common factors, spatial and verbal, are allowed to be correlated. On the other hand, the unique factors are assumed to be uncorrelated with each other and with the common factors. The path coefficients leading from the common factors to the observed variables are sometimes called factor loadings. Identification This model is identified except that, as usual, the measurement scale of each unobserved variable is indeterminate. The measurement scale of each unobserved variable can be established arbitrarily by setting its regression weight to a constant, such as 1, in some regression equation. The preceding path diagram shows how to do this. In that path diagram, eight regression weights are fixed at 1, which is one fixed regression weight for each unobserved variable. These constraints are sufficient to make the model identified. The proposed model is a particularly simple common factor analysis model, in that each observed variable depends on just one common factor. In other applications of common factor analysis, an observed variable can depend on any number of common factors at the same time. In the general case, it can be very difficult to decide whether a common factor analysis model is identified or not (Davis, 1993; Jöreskog, 1969, 1979). The discussion of identifiability given in this and earlier examples made the issue appear simpler than it actually is, giving the impression that the lack of a natural unit of measurement for unobserved variables is the sole cause of non-identification. It 140 Example 8 is true that the lack of a unit of measurement for unobserved variables is an ever-present cause of non-identification. Fortunately, it is one that is easy to cure, as we have done repeatedly. But other kinds of under-identification can occur for which there is no simple remedy. Conditions for identifiability have to be established separately for individual models. Jöreskog and Sörbom (1984) show how to achieve identification of many models by imposing equality constraints on their parameters. In the case of the factor analysis model (and many others), figuring out what must be done to make the model identified requires a pretty deep understanding of the model. If you are unable to tell whether a model is identified, you can try fitting the model in order to see whether Amos reports that it is unidentified. In practice, this empirical approach works quite well, although there are objections to it in principle (McDonald and Krane, 1979), and it is no substitute for an a priori understanding of the identification status of a model. Bollen (1989) discusses causes and treatments of many types of non-identification in his excellent textbook. Specifying the Model Amos analyzes the model directly from the path diagram shown on p. 138. Notice that the model can conceptually be separated into spatial and verbal branches. You can use the structural similarity of the two branches to accelerate drawing the model. Drawing the Model After you have drawn the first branch: E From the menus, choose Edit > Select All to highlight the entire branch. E To create a copy of the entire branch, from the menus, choose Edit > Duplicate and drag one of the objects in the branch to another location in the path diagram. Be sure to draw a double-headed arrow connecting spatial and verbal. If you leave out the double-headed arrow, Amos will assume that the two common factors are uncorrelated. The input file for this example is Ex08.amw. 141 Factor Analysis Results of the Analysis Here are the unstandardized results of the analysis. As shown at the upper right corner of the figure, the model fits the data quite well. Chi-square = 7.853 (8 df) p = .448 23.30 spatial 1.00 .61 1.20 visperc cubes lozenges 1 1 1 23.87 err_v 11.60 err_c 28.28 err_l 7.32 9.68 verbal 1.00 1.33 2.23 paragrap sentence wordmean 1 1 1 2.83 err_p 7.97 err_s 19.93 err_w Example 8 Factor analysis: Girls' sample Holzinger and Swineford (1939) Unstandardized estimates As an exercise, you may wish to confirm the computation of degrees of freedom. Computation of degrees of freedom: (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (21 – 13): 21 13 8 The parameter estimates, both standardized and unstandardized, are shown next. As you would expect, the regression weights are positive, as is the correlation between spatial ability and verbal ability. 142 Example 8 Regression Weights: (Group number 1 - Default model) visperc <--- spatial cubes <--- spatial lozenges <--- spatial paragrap <--- verbal sentence <--- verbal wordmean <--- verbal Estimate 1.000 .610 1.198 1.000 1.334 2.234 S.E. C.R. P .143 .272 4.250 *** 4.405 *** .160 .263 8.322 *** 8.482 *** Label Standardized Regression Weights: (Group number 1 Default model) visperc <--cubes <--lozenges <--paragrap <--sentence <--wordmean <--- Estimate .703 .654 .736 .880 .827 .841 spatial spatial spatial verbal verbal verbal Covariances: (Group number 1 - Default model) spatial <--> verbal Estimate 7.315 S.E. 2.571 C.R. P 2.846 .004 Label Correlations: (Group number 1 - Default model) spatial <--> verbal Estimate .487 Variances: (Group number 1 - Default model) spatial verbal err_v err_c err_l err_p err_s err_w Estimate 23.302 9.682 23.873 11.602 28.275 2.834 7.967 19.925 S.E. 8.123 2.159 5.986 2.584 7.892 .868 1.869 4.951 C.R. P 2.868 .004 4.485 *** 3.988 *** 4.490 *** 3.583 *** 3.263 .001 4.263 *** 4.024 *** Label Obtaining Standardized Estimates To get the standardized estimates shown above, do the following before you perform the analysis: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Select Standardized estimates (a check mark appears next to it). 143 Factor Analysis E Also select Squared multiple correlations if you want squared multiple correlation for each endogenous variable, as shown in the next graphic. E Close the dialog box. Squared Multiple Correlations: (Group number 1 Default model) wordmean sentence paragrap lozenges cubes visperc Estimate .708 .684 .774 .542 .428 .494 Viewing Standardized Estimates E In the Amos Graphics window, click the Show the output path diagram button. E Select Standardized estimates in the Parameter Formats panel at the left of the path diagram. Here is the path diagram with standardized estimates displayed: Chi-square = 7.853 (8 df) p = .448 .49 .70 visperc err_v .43 spatial .65 cubes err_c .54 .74 .49 lozenges err_l .77 .88 paragrap err_p .68 verbal .83 sentence err_s .71 .84 wordmean err_w Example 8 Factor analysis: Girls' sample Holzinger and Swineford (1939) Standardized estimates 144 Example 8 The squared multiple correlations can be interpreted as follows: To take wordmean as an example, 71% of its variance is accounted for by verbal ability. The remaining 29% of its variance is accounted for by the unique factor err_w. If err_w represented measurement error only, we could say that the estimated reliability of wordmean is 0.71. As it is, 0.71 is an estimate of a lower-bound on the reliability of wordmean. The Holzinger and Swineford data have been analyzed repeatedly in textbooks and in demonstrations of new factor analytic techniques. The six tests used in this example are taken from a larger subset of nine tests used in a similar example by Jöreskog and Sörbom (1984). The factor analysis model employed here is also adapted from theirs. In view of the long history of exploration of the Holzinger and Swineford data in the factor analysis literature, it is no accident that the present model fits very well. Even more than usual, the results presented here require confirmation on a fresh set of data. Modeling in VB.NET The following program specifies the factor model for Holzinger and Swineford’s data. It is saved in the file Ex08.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_fem.sav") Sem.AStructure("visperc = (1) spatial + (1) err_v") Sem.AStructure("cubes = spatial + (1) err_c") Sem.AStructure("lozenges = spatial + (1) err_l") Sem.AStructure("paragrap = (1) verbal + (1) err_p") Sem.AStructure("sentence = verbal + (1) err_s") Sem.AStructure("wordmean = verbal + (1) err_w") Sem.FitModel() Finally Sem.Dispose() End Try End Sub You do not need to explicitly allow the factors (spatial and verbal) to be correlated. Nor is it necessary to specify that the unique factors be uncorrelated with each other and with the two factors. These are default assumptions in an Amos program (but not in Amos Graphics). Example 9 An Alternative to Analysis of Covariance Introduction This example demonstrates a simple alternative to an analysis of covariance that does not require perfectly reliable covariates. A better, but more complicated, alternative will be demonstrated in Example 16. Analysis of Covariance and Its Alternative Analysis of covariance is a technique that is frequently used in experimental and quasi-experimental studies to reduce the effect of pre-existing differences among treatment groups. Even when random assignment to treatment groups has eliminated the possibility of systematic pretreatment differences among groups, analysis of covariance can pay off in increased precision in evaluating treatment effects. The usefulness of analysis of covariance is compromised by the assumption that each covariate be measured without error. The method makes other assumptions as well, but the assumption of perfectly reliable covariates has received particular attention (for example, Cook and Campbell, 1979). In part, this is because the effects of violating the assumption can be so bad. Using unreliable covariates can lead to the erroneous conclusion that a treatment has an effect when it doesn’t or that a treatment has no effect when it really does. Unreliable covariates can even make a treatment look like it does harm when it is actually beneficial. At the same time, unfortunately, the assumption of perfectly reliable covariates is typically impossible to meet. The present example demonstrates an alternative to analysis of covariance in which no variable has to be measured without error. The method to be demonstrated 145 146 Example 9 here has been employed by Bentler and Woodward (1979) and others. Another approach, by Sörbom (1978), is demonstrated in Example 16. The Sörbom method is more general. It allows testing other assumptions of analysis of covariance and permits relaxing some of them as well. The Sörbom approach is comparatively complicated because of its generality. By contrast, the method demonstrated in this example makes the usual assumptions of analysis of covariance, except for the assumption that covariates are measured without error. The virtue of the method is its comparative simplicity. The present example employs two treatment groups and a single covariate. It may be generalized to any number of treatment groups and any number of covariates. Sörbom (1978) used the data that we will be using in this example and Example 16. The analysis closely follows Sörbom’s example. About the Data Olsson (1973) administered a battery of eight tests to 213 eleven-year-old students on two occasions. We will employ two of the eight tests, Synonyms and Opposites, in this example. Between the two administrations of the test battery, 108 of the students (the experimental group) received training that was intended to improve performance on the tests. The other 105 students (the control group) did not receive any special training. As a result of taking two tests on two occasions, each of the 213 students obtained four test scores. A fifth, dichotomous variable was created to indicate membership in the experimental or control group. Altogether, the following variables are used in this example: Variable Description pre_syn pre_opp post_syn post_opp Pretest scores on the Synonyms test. Pretest scores on the Opposites test. Posttest scores on the Synonyms test. Posttest scores on the Opposites test. A dichotomous variable taking on the value 1 for students who received the special training, and 0 for those who did not. This variable was created especially for the analyses in this example. treatment 147 An Alternative to Analysis of Covariance Correlations and standard deviations for the five measures are contained in the Microsoft Excel workbook UserGuide.xls, in the Olss_all worksheet. Here is the dataset: There are positive correlations between treatment and each of the posttests, which indicates that the trained students did better on the posttests than the untrained students. The correlations between treatment and each of the pretests are positive but relatively small. This indicates that the control and experimental groups did about equally well on the pretests. You would expect this, since students were randomly assigned to the control and experimental groups. Analysis of Covariance To evaluate the effect of training on performance, one might consider carrying out an analysis of covariance with one of the posttests as the criterion variable, and the two pretests as covariates. In order for that analysis to be appropriate, both the synonyms pretest and the opposites pretest would have to be perfectly reliable. Model A for the Olsson Data Consider the model for the Olsson data shown in the next path diagram. The model asserts that pre_syn and pre_opp are both imperfect measures of an unobserved ability called pre_verbal that might be thought of as verbal ability at the time of the pretest. The unique variables eps1 and eps2 represent errors of measurement in pre_syn and pre_opp, as well as any other influences on the two tests not represented elsewhere in the path diagram. 148 Example 9 eps1 1 eps2 eps3 1 pre_syn pre_opp 1 eps4 1 post_syn post_opp 1 1 pre_verbal post_verbal 1 zeta treatment Example 9: Model A Olsson (1973) test coaching study Model Specification Similarly, the model asserts that post_syn and post_opp are imperfect measures of an unobserved ability called post_verbal, which might be thought of as verbal ability at the time of the posttest. Eps3 and eps4 represent errors of measurement and other sources of variation not shown elsewhere in the path diagram. The model shows two variables that may be useful in accounting for verbal ability at the time of the posttest. One such predictor is verbal ability at the time of the pretest. It would not be surprising to find that verbal ability at the time of the posttest depends on verbal ability at the time of the pretest. Because past performance is often an excellent predictor of future performance, the model uses the latent variable pre_verbal as a covariate. However, our primary interest lies in the second predictor, treatment. We are mostly interested in the regression weight associated with the arrow pointing from treatment to post_verbal, and whether it is significantly different from 0. In other words, we will eventually want to know whether the model shown above could be accepted as correct under the additional hypothesis that that particular regression weight is 0. But first, we had better ask whether Model A can be accepted as it stands. Identification The units of measurement of the seven unobserved variables are indeterminate. This indeterminacy can be remedied by finding one single-headed arrow pointing away from each unobserved variable in the above figure, and fixing the corresponding regression weight to unity (1). The seven 1’s shown in the path diagram above indicate a satisfactory choice of identification constraints. 149 An Alternative to Analysis of Covariance Specifying Model A To specify Model A, draw a path diagram similar to the one on p. 148. The path diagram is saved as the file Ex09-a.amw. Results for Model A There is considerable empirical evidence against Model A: Chi-square = 33.215 Degrees of freedom = 3 Probability level = 0.000 This is bad news. If we had been able to accept Model A, we could have taken the next step of repeating the analysis with the regression weight for regressing post_verbal on treatment fixed at 0. But there is no point in doing that now. We have to start with a model that we believe is correct in order to use it as the basis for testing a stronger no treatment effect version of the model. Searching for a Better Model Perhaps there is some way of modifying Model A so that it fits the data better. Some suggestions for suitable modifications can be obtained from modification indices. Requesting Modification Indices E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Select Modification indices and enter a suitable threshold in the field to its right. For this example, the threshold will remain at its default value of 4. 150 Example 9 Requesting modification indices with a threshold of 4 produces the following additional output: Modification Indices (Group number 1 - Default model) Covariances: (Group number 1 - Default model) eps2 <--> eps4 eps2 <--> eps3 eps1 <--> eps4 eps1 <--> eps3 M.I. 13.161 10.813 11.968 9.788 Par Change 3.249 -2.822 -3.228 2.798 According to the first modification index in the M.I. column, the chi-square statistic will decrease by at least 13.161 if the unique variables eps2 and eps4 are allowed to be correlated (the actual decrease may be greater). At the same time, of course, the number of degrees of freedom will drop by 1 because of the extra parameter that will have to be estimated. Since 13.161 is the largest modification index, we should consider it first and ask whether it is reasonable to think that eps2 and eps4 might be correlated. Eps2 represents whatever pre_opp measures other than verbal ability at the pretest. Similarly, eps4 represents whatever post_opp measures other than verbal ability at the posttest. It is plausible that some stable trait or ability other than verbal ability is measured on both administrations of the Opposites test. If so, then you would expect a positive correlation between eps2 and eps4. In fact, the expected parameter change (the number in the Par Change column) associated with the covariance between eps2 and eps4 is positive, which indicates that the covariance will probably have a positive estimate if the covariance is not fixed at 0. It might be added that the same reasoning that suggests allowing eps2 and eps4 to be correlated applies almost as well to eps1 and eps3, whose covariance also has a fairly large modification index. For now, however, we will add only one parameter to Model A: the covariance between eps2 and eps4. We call this new model Model B. Model B for the Olsson Data Below is the path diagram for Model B. It can be obtained by taking the path diagram for Model A and adding a double-headed arrow connecting eps2 and eps4. This path diagram is saved in the file Ex09-b.amw. 151 An Alternative to Analysis of Covariance eps1 1 eps2 eps3 1 pre_syn 1 pre_opp eps4 1 post_syn post_opp 1 1 pre_verbal post_verbal 1 zeta treatment Example 9: Model B Olsson (1973) test coaching study Model Specification You may find your error variables already positioned at the top of the path diagram, with no room to draw the double-headed arrow. To fix the problem: E From the menus, choose Edit > Fit to Page. Alternatively, you can: E Draw the double-headed arrow and, if it is out of bounds, click the Resize (page with arrows) button. Amos will shrink your path diagram to fit within the page boundaries. Results for Model B Allowing eps2 and eps4 to be correlated results in a dramatic reduction of the chi-square statistic. Chi-square = 2.684 Degrees of freedom = 2 Probability level = 0.261 You may recall from the results of Model A that the modification index for the covariance between eps1 and eps3 was 9.788. Clearly, freeing that covariance in addition to the covariance between eps2 and eps4 covariance would not have produced an additional drop in the chi-square statistic of 9.788, since this would imply a negative chi-square statistic. Thus, a modification index represents the minimal drop in the 152 Example 9 chi-square statistic that will occur if the corresponding constraint—and only that constraint—is removed. The following raw parameter estimates are difficult to interpret because they would have been different if the identification constraints had been different: Regression Weights: (Group number 1 - Default model) post_verbal <--- pre_verbal post_verbal <--- treatment pre_syn <--- pre_verbal pre_opp <--- pre_verbal post_syn <--- post_verbal post_opp <--- post_verbal Estimate S.E. .889 .053 3.640 .477 1.000 .881 .053 1.000 .906 .053 C.R. P 16.900 *** 7.625 *** Label 16.606 *** 16.948 *** Covariances: (Group number 1 - Default model) pre_verbal <--> treatment eps2 <--> eps4 Estimate S.E. C.R. P .467 .226 2.066 .039 6.797 1.344 5.059 *** Label Variances: (Group number 1 - Default model) pre_verbal treatment zeta eps1 eps2 eps3 eps4 Estimate S.E. C.R. 38.491 4.501 8.552 .249 .024 10.296 4.824 1.331 3.625 6.013 1.502 4.004 12.255 1.603 7.646 6.546 1.501 4.360 14.685 1.812 8.102 P *** *** *** *** *** *** *** Label As expected, the covariance between eps2 and eps4 is positive. The most interesting result that appears along with the parameter estimates is the critical ratio for the effect of treatment on post_verbal. This critical ratio shows that treatment has a highly significant effect on post_verbal. We will shortly obtain a better test of the significance of this effect by modifying Model B so that this regression weight is fixed at 0. In the meantime, here are the standardized estimates and the squared multiple correlations as displayed by Amos Graphics: 153 An Alternative to Analysis of Covariance .51 eps1 eps2 .86 pre_syn eps3 .71 pre_opp .93 .93 .86 .88 .84 post_verbal . .15 .70 post_syn post_opp .84 pre_verbal eps4 .86 28 zeta treatment Example 9: Model B Olsson (1973) test coaching study Standardized estimates In this example, we are primarily concerned with testing a particular hypothesis and not so much with parameter estimation. However, even when the parameter estimates themselves are not of primary interest, it is a good idea to look at them anyway to see if they are reasonable. Here, for instance, you may not care exactly what the correlation between eps2 and eps4 is, but you would expect it to be positive. Similarly, you would be surprised to find any negative estimates for regression weights in this model. In any model, you know that variables cannot have negative variances, so a negative variance estimate would always be an unreasonable estimate. If estimates cannot pass a gross sanity check, particularly with a reasonably large sample, you have to question the correctness of the model under which they were obtained, no matter how well the model fits the data. Model C for the Olsson Data Now that we have a model (Model B) that we can reasonably believe is correct, let’s see how it fares if we add the constraint that post_verbal does not depend on treatment. In other words, we will test a new model (call it Model C) that is just like Model B except that Model C specifies that post_verbal has a regression weight of 0 on treatment. 154 Example 9 Drawing a Path Diagram for Model C To draw the path diagram for Model C: E Start with the path diagram for Model B. E Right-click the arrow that points from treatment to post_verbal and choose Object Properties from the pop-up menu. E In the Object Properties dialog box, click the Parameters tab and type 0 in the Regression weight text box. The path diagram for Model C is saved in the file Ex09-c.amw. Results for Model C Model C has to be rejected at any conventional significance level. Chi-square = 55.396 Degrees of freedom = 3 Probability level = 0.000 If you assume that Model B is correct and that only the correctness of Model C is in doubt, then a better test of Model C can be obtained as follows: In going from Model B to Model C, the chi-square statistic increased by 52.712 (that is, 55.396 – 2.684), while the number of degrees of freedom increased by 1 (that is, 3 – 2). If Model C is correct, 52.712 is an observation on a random variable that has an approximate chi-square distribution with one degree of freedom. The probability of such a random variable exceeding 52.712 is exceedingly small. Thus, Model C is rejected in favor of Model B. Treatment has a significant effect on post_verbal. Fitting All Models At Once The example file Ex09-all.amw fits all three models (A through C) in a single analysis. The procedure for fitting multiple models in a single analysis was demonstrated in Example 6. 155 An Alternative to Analysis of Covariance Modeling in VB.NET Model A This program fits Model A. It is saved in the file Ex09–a.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Olss_all") Sem.AStructure("pre_syn = (1) pre_verbal + (1) eps1") Sem.AStructure("pre_opp = pre_verbal + (1) eps2") Sem.AStructure("post_syn = (1) post_verbal + (1) eps3") Sem.AStructure("post_opp = post_verbal + (1) eps4") Sem.AStructure("post_verbal = pre_verbal + treatment + (1) zeta") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Model B This program fits Model B. It is saved in the file Ex09–b.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Olss_all") Sem.AStructure("pre_syn = (1) pre_verbal + (1) eps1") Sem.AStructure("pre_opp = pre_verbal + (1) eps2") Sem.AStructure("post_syn = (1) post_verbal + (1) eps3") Sem.AStructure("post_opp = post_verbal + (1) eps4") Sem.AStructure("post_verbal = pre_verbal + treatment + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 156 Example 9 Model C This program fits Model C. It is saved in the file Ex09–c.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Olss_all") Sem.AStructure("pre_syn = (1) pre_verbal + (1) eps1") Sem.AStructure("pre_opp = pre_verbal + (1) eps2") Sem.AStructure("post_syn = (1) post_verbal + (1) eps3") Sem.AStructure("post_opp = post_verbal + (1) eps4") Sem.AStructure("post_verbal = pre_verbal + (0) treatment + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 157 An Alternative to Analysis of Covariance Fitting Multiple Models This program (Ex09-all.vb) fits all three models (A through C). Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Olss_all") Sem.AStructure("pre_syn = (1) pre_verbal + (1) eps1") Sem.AStructure("pre_opp = pre_verbal + (1) eps2") Sem.AStructure("post_syn = (1) post_verbal + (1) eps3") Sem.AStructure("post_opp = post_verbal + (1) eps4") Sem.AStructure("post_verbal = pre_verbal + (effect) treatment + (1) zeta") Sem.AStructure("eps2 <---> eps4 (cov2_4)") Sem.Model("Model_A", "cov2_4 = 0") Sem.Model("Model_B") Sem.Model("Model_C", "effect = 0") Sem.FitAllModels() Finally Sem.Dispose() End Try End Sub Example 10 Simultaneous Analysis of Several Groups Introduction This example demonstrates how to fit a model to two sets of data at once. Amos is capable of modeling data from multiple groups (or samples) simultaneously. This multigroup facility allows for many additional types of analyses, as illustrated in the next several examples. Analysis of Several Groups We return once again to Attig’s (1983) memory data from young and old subjects, which were used in Example 1 through Example 3. In this example, we will compare results from the two groups to see how similar they are. However, we will not compare the groups by performing separate analyses for old people and young people. Instead, we will perform a single analysis that estimates parameters and tests hypotheses about both groups at once. This method has two advantages over doing separate analyses for the young and old groups. First, it provides a test for the significance of any differences found between young and old people. Second, if there are no differences between young and old people or if the group differences concern only a few model parameters, the simultaneous analysis of both groups provides more accurate parameter estimates than would be obtained from two separate single-group analyses. 159 160 Example 10 About the Data We will use Attig’s memory data from both young and old subjects. Following is a partial listing of the old subjects’ data found in the worksheet Attg_old located in the Microsoft Excel workbook UserGuide.xls: The young subjects’ data are in the Attg_yng worksheet. This example uses only the measures recall1 and cued1. Data for multigroup analysis can be organized in a variety of ways. One option is to separate the data into different files, with one file for each group (as we have done in this example). A second possibility is to keep all the data in one big file and include a group membership variable. Model A We will begin with a truly trivial model (Model A) for two variables: recall1 and cued1. The model simply says that, for young subjects as well as old subjects, recall1 and cued1 are two variables that have some unspecified variances and some unspecified covariance. The variances and the covariance are allowed to be different for young and old people. 161 Simultaneous Analysis of Several Groups Conventions for Specifying Group Differences The main purpose of a multigroup analysis is to find out the extent to which groups differ. Do the groups all have the same path diagram with the same parameter values? Do the groups have the same path diagram but with different parameter values for different groups? Does each group need a different path diagram? Amos Graphics has the following conventions for specifying group differences in a multigroup analysis: All groups have the same path diagram unless explicitly declared otherwise. Unnamed parameters are permitted to have different values in different groups. Thus, the default multigroup model under Amos Graphics uses the same path diagram for all groups but allows different parameter values for different groups. Parameters in different groups can be constrained to the same value by giving them the same label. (This will be demonstrated in Model B on p. 172.) Specifying Model A E From the menus, choose File > New to start a new path diagram. E From the menus, choose File > Data Files. Notice that the Data Files dialog box allows you to specify a data file for only a single group called Group number 1. We have not yet told the program that this is a multigroup analysis. 162 Example 10 E Click File Name, select the Excel workbook UserGuide.xls that is in the Amos Examples directory, and click Open. E In the Select a Data Table dialog box, select the Attg_yng worksheet. E Click OK to close the Select a Data Table dialog box. E Click OK to close the Data Files dialog box. E From the menus, choose View > Variables in Dataset. E Drag observed variables recall1 and cued1 to the diagram. 163 Simultaneous Analysis of Several Groups E Connect recall1 and cued1 with a double-headed arrow. E To add a caption to the path diagram, from the menus, choose Diagram > Figure Caption and then click the path diagram at the spot where you want the caption to appear. E In the Figure Caption dialog box, enter a title that contains the text macros \group and \format. 164 Example 10 E Click OK to complete the model specification for the young group. E To add a second group, from the menus, choose Analyze > Manage Groups. E In the Manage Groups dialog box, change the name in the Group Name text box from Group number 1 to young subjects. E Click New to create a second group. E Change the name in the Group Name text box from Group number 2 to old subjects. 165 Simultaneous Analysis of Several Groups E Click Close. E From the menus, choose File > Data Files. The Data Files dialog box shows that there are two groups labeled young subjects and old subjects. E To specify the dataset for the old subjects, in the Data Files dialog box, select old subjects. E Click File Name, select the Excel workbook UserGuide.xls that is in the Amos Examples directory, and click Open. E In the Select a Data Table dialog box, select the Attg_old worksheet. 166 Example 10 E Click OK. Text Output Model A has zero degrees of freedom. Computation of degrees of freedom (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (6 - 6): 6 6 0 Amos computed the number of distinct sample moments this way: The young subjects have two sample variances and one sample covariance, which makes three sample moments. The old subjects also have three sample moments, making a total of six sample moments. The parameters to be estimated are the population moments, and there are six of them as well. Since there are zero degrees of freedom, this model is untestable. Chi-square = 0.000 Degrees of freedom = 0 Probability level cannot be computed 167 Simultaneous Analysis of Several Groups To view parameter estimates for the young people in the Amos Output window: E Click Estimates in the tree diagram in the upper left pane. E Click young subjects in the Groups panel at the left side of the window. Covariances: (young subjects - Default model) recall1 <--> cued1 Estimate 3.225 S.E. .944 C.R. 3.416 P *** Label Variances: (young subjects - Default model) Estimate 5.787 4.210 recall1 cued1 S.E. 1.311 .953 C.R. 4.416 4.416 P *** *** Label To view the parameter estimates for the old subjects: E Click old subjects in the Groups panel. Covariances: (old subjects - Default model) recall1 <--> cued1 Estimate 4.887 S.E. 1.252 C.R. 3.902 P *** Label Variances: (old subjects - Default model) Estimate 5.569 6.694 recall1 cued1 S.E. 1.261 1.516 C.R. 4.416 4.416 P *** *** Label Graphics Output The following are the output path diagrams showing unstandardized estimates for the two groups: 5.79 4.21 recall1 cued1 5.57 6.69 recall1 cued1 3.22 4.89 Example 10: Model A Simultaneous analysis of several groups Attig (1983) young subjects Unstandardized estimates Example 10: Model A Simultaneous analysis of several groups Attig (1983) old subjects Unstandardized estimates The panels at the left of the Amos Graphics window provide a variety of viewing options. 168 Example 10 Click either the View Input or View Output button to see an input or output path diagram. Select either young subjects or old subjects in the Groups panel. Select either Unstandardized estimates or Standardized estimates in the Parameter Formats panel. Model B It is easy to see that the parameter estimates are different for the two groups. But are the differences significant? One way to find out is to repeat the analysis, but this time requiring that each parameter in the young population be equal to the corresponding parameter in the old population. The resulting model will be called Model B. For Model B, it is necessary to name each parameter, using the same parameter names in the old group as in the young group. E Start by clicking young subjects in the Groups panel at the left of the path diagram. E Right-click the recall1 rectangle in the path diagram. E From the pop-up menu, choose Object Properties. E In the Object Properties dialog box, click the Parameters tab. 169 Simultaneous Analysis of Several Groups E In the Variance text box, enter a name for the variance of recall1; for example, type var_rec. E Select All groups (a check mark will appear next to it). The effect of the check mark is to assign the name var_rec to the variance of recall1 in all groups. Without the check mark, var_rec would be the name of the variance for recall1 for the young group only. E While the Object Properties dialog box is open, click cued1 and type the name var_cue for its variance. E Click the double-headed arrow and type the name cov_rc for the covariance. Always make sure that you select All groups. The path diagram for each group should now look like this: var_rec recall1 var_cue cued1 cov_rc Example 10: Model B Homogenous covariance structures in two groups, Attig (1983) data. Model Specification 170 Example 10 Text Output Because of the constraints imposed in Model B, only three distinct parameters are estimated instead of six. As a result, the number of degrees of freedom has increased from 0 to 3. Computation of degrees of freedom (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (6 - 3): 6 3 3 Model B is acceptable at any conventional significance level. Chi-square = 4.588 Degrees of freedom = 3 Probability level = 0.205 The following are the parameter estimates obtained under Model B for the young subjects. (The parameter estimates for the old subjects are the same.) Covariances: (young subjects - Default model) recall1 <--> cued1 Estimate 4.056 S.E. .780 C.R. 5.202 P *** Label cov_rc Variances: (young subjects - Default model) recall1 cued1 Estimate 5.678 5.452 S.E. .909 .873 C.R. 6.245 6.245 P *** *** Label var_rec var_cue You can see that the standard error estimates obtained under Model B are smaller (for the young subjects, 0.780, 0.909, and 0.873) than the corresponding estimates obtained under Model A (0.944, 1.311, and 0.953). The Model B estimates are to be preferred over the ones from Model A as long as you believe that Model B is correct. 171 Simultaneous Analysis of Several Groups Graphics Output For Model B, the output path diagram is the same for both groups. Chi-square = 4.588 (3 df) p = .205 5.68 5.45 recall1 cued1 4.06 Modeling in VB.NET Model A Here is a program (Ex10-a.vb) for fitting Model A: Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_yng") Sem.GroupName("young subjects") Sem.AStructure("recall1") Sem.AStructure("cued1") Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_old") Sem.GroupName("old subjects") Sem.AStructure("recall1") Sem.AStructure("cued1") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 172 Example 10 The BeginGroup method is used twice in this two-group analysis. The first BeginGroup line specifies the Attg_yng dataset. The three lines that follow supply a name and a model for that group. The second BeginGroup line specifies the Attg_old dataset, and the following three lines supply a name and a model for that group. The model for each group simply says that recall1 and cued1 are two variables with unconstrained variances and an unspecified covariance. The GroupName method is optional, but it is useful in multiple-group analyses because it helps Amos to label the output in a meaningful way. Model B The following program for Model B is saved in Ex10-b.vb: Sub Main() Dim Sem As New AmosEngine Try Dim dataFile As String = Sem.AmosDir & "Examples\UserGuide.xls" Sem.Standardized() Sem.TextOutput() Sem.BeginGroup(dataFile, "Attg_yng") Sem.GroupName("young subjects") Sem.AStructure("recall1 (var_rec)") Sem.AStructure("cued1 (var_cue)") Sem.AStructure("recall1 <> cued1 (cov_rc)") Sem.BeginGroup(dataFile, "Attg_old") Sem.GroupName("old subjects") Sem.AStructure("recall1 (var_rec)") Sem.AStructure("cued1 (var_cue)") Sem.AStructure("recall1 <> cued1 (cov_rc)") Sem.FitModel() Finally Sem.Dispose() End Try End Sub The parameter names var_rec, var_cue, and cov_rc (in parentheses) are used to require that some parameters have the same value for old people as for young people. Using the name var_rec twice requires recall1 to have the same variance in both populations. Similarly, using the name var_cue twice requires cued1 to have the same variance in both populations. Using the name cov_rc twice requires that recall1 and cued1 have the same covariance in both populations. 173 Simultaneous Analysis of Several Groups Multiple Model Input Here is a program (Ex10-all.vb) for fitting both Models A and B.1 Sub Main() Dim Sem As New AmosEngine Try Sem.Standardized() Sem.TextOutput() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_yng") Sem.GroupName("young subjects") Sem.AStructure("recall1 (yng_rec)") Sem.AStructure("cued1 (yng_cue)") Sem.AStructure("recall1 <> cued1 (yng_rc)") Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_old") Sem.GroupName("old subjects") Sem.AStructure("recall1 (old_rec)") Sem.AStructure("cued1 (old_cue)") Sem.AStructure("recall1 <> cued1 (old_rc)") Sem.Model("Model A") Sem.Model("Model B", "yng_rec=old_rec", "yng_cue=old_cue", _ "yng_rc=old_rc") Sem.FitAllModels() Finally Sem.Dispose() End Try End Sub The Sem.Model statements should appear immediately after the AStructure specifications for the last group. It does not matter which Model statement goes first. 1 In Example 6 (Ex06-all.vb), multiple model constraints were written in a single string, within which individual constraints were separated by semicolons. In the present example, each constraint is in its own string, and the individual strings are separated by commas. Either syntax is acceptable. Example 11 Felson and Bohrnstedt’s Girls and Boys Introduction This example demonstrates how to fit a simultaneous equations model to two sets of data at once. Felson and Bohrnstedt’s Model Example 7 tested Felson and Bohrnstedt’s (1979) model for perceived attractiveness and perceived academic ability using a sample of 209 girls. Here, we take the same model and attempt to apply it simultaneously to the Example 7 data and to data from another sample of 207 boys. We will examine the question of whether the measured variables are related to each other in the same way for boys as for girls. About the Data The Felson and Bohrnstedt (1979) data for girls were described in Example 7. Here is a table of the boys’ data from the SPSS Statistics file Fels_mal.sav: 175 176 Example 11 Notice that there are eight variables in the boys’ data file but only seven in the girls’ data file. The extra variable skills is not used in any model of this example, so its presence in the data file is ignored. Specifying Model A for Girls and Boys Consider extending the Felson and Bohrnstedt model of perceived attractiveness and academic ability to boys as well as girls. To do this, we will start with the girls-only model specification from Example 7 and modify it to accommodate two groups. If you have already drawn the path diagram for Example 7, you can use it as a starting point for this example. No additional drawing is needed. Parameter estimates can be displayed on a path diagram for only one group at a time in a multigroup analysis. It is useful then to display a figure caption that tells which group the parameter estimates represent. Specifying a Figure Caption To create a figure caption that displays the group name, place the \group text macro in the caption. E From the menus, choose Diagram > Figure Caption. E Click the path diagram at the spot where you want the caption to appear. 177 Felson and Bohrnstedt’s Girls and Boys E In the Figure Caption dialog box, enter a title that contains the text macro \group. For example: In Example 7, where there was only one group, the group’s name didn’t matter. Accepting the default name Group number 1 was good enough. Now that there are two groups to keep track of, the groups should be given meaningful names. E From the menus, choose Analyze > Manage Groups. E In the Manage Groups dialog box, type girls for Group Name. E While the Manage Groups dialog box is open, create a second group by clicking New. E Type boys in the Group Name text box. 178 Example 11 E Click Close to close the Manage Groups dialog box. E From the menus, choose File > Data Files. E In the Data Files dialog box, double-click girls and select the data file Fels_fem.sav. E Then, double-click boys and select the data file Fels_mal.sav. E Click OK to close the Data Files dialog box. Your path diagram should look something like this for the boys’ sample: GPA academic 1 error1 height weight attract 1 error2 rating Example 11: Model A A nonrecursive, two-group model Felson and Bohrnstedt (1979) boys' data Model Specification Notice that, although girls and boys have the same path diagram, there is no requirement that the parameters have the same values in the two groups. This means that estimates of regression weights, covariances, and variances may be different for boys than for girls. 179 Felson and Bohrnstedt’s Girls and Boys Text Output for Model A With two groups instead of one (as in Example 7), there are twice as many sample moments and twice as many parameters to estimate. Therefore, you have twice as many degrees of freedom as there were in Example 7. Computation of degrees of freedom (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (42 - 38): 42 38 4 The model fits the data from both groups quite well. Chi-square = 3.183 Degrees of freedom = 4 Probability level = 0.528 We accept the hypothesis that the Felson and Bohrnstedt model is correct for both boys and girls. The next thing to look at is the parameter estimates. We will be interested in how the girls’ estimates compare to the boys’ estimates. The following are the parameter estimates for the girls: Regression Weights: (girls - Default model) academic <--- GPA attract <--- height attract <--- weight attract <--- rating attract <--- academic academic <--- attract Estimate S.E. C.R. P .023 .004 6.241 *** .000 .010 .050 .960 -.002 .001 -1.321 .186 .176 .027 6.444 *** 1.607 .350 4.599 *** -.002 .051 -.039 .969 Covariances: (girls - Default model) GPA <--> rating height <--> rating GPA <--> weight GPA <--> height height <--> weight weight <--> rating error1 <--> error2 Estimate S.E. .526 .246 -.468 .205 -6.710 4.676 1.819 .712 19.024 4.098 -5.243 1.395 -.004 .010 C.R. 2.139 -2.279 -1.435 2.555 4.642 -3.759 -.382 P .032 .023 .151 .011 *** *** .702 Variances: (girls - Default model) GPA height weight rating error1 error2 Estimate S.E. 12.122 1.189 8.428 .826 371.476 36.427 1.015 .100 .019 .003 .143 .014 C.R. 10.198 10.198 10.198 10.198 5.747 9.974 P *** *** *** *** *** *** Label Label Label 180 Example 11 These parameter estimates are the same as in Example 7. Standard errors, critical ratios, and p values are also the same. The following are the unstandardized estimates for the boys: Regression Weights: (boys - Default model) academic <--- GPA attract <--- height attract <--- weight attract <--- rating attract <--- academic academic <--- attract Estimate S.E. C.R. .021 .003 6.927 .019 .010 1.967 -.003 .001 -2.484 .095 .030 3.150 1.386 .315 4.398 .063 .059 1.071 P *** .049 .013 .002 *** .284 Covariances: (boys - Default model) GPA <--> rating height <--> rating GPA <--> weight GPA <--> height height <--> weight weight <--> rating error1 <--> error2 Estimate S.E. .507 .274 .198 .230 -15.645 6.899 -1.508 .961 42.091 6.455 -4.226 1.662 -.010 .011 C.R. 1.850 .860 -2.268 -1.569 6.521 -2.543 -.898 P .064 .390 .023 .117 *** .011 .369 Variances: (boys - Default model) GPA height weight rating error1 error2 Estimate S.E. 16.243 1.600 11.572 1.140 588.605 57.996 .936 .092 .015 .002 .164 .016 C.R. 10.149 10.149 10.149 10.149 7.571 10.149 P *** *** *** *** *** *** Label Label Label 181 Felson and Bohrnstedt’s Girls and Boys Graphics Output for Model A For girls, this is the path diagram with unstandardized estimates displayed: 12.12 .02 GPA academic 1 .02 error1 1.82 8.43 -6.71 1.61 .00 .00 371.48 -.47 weight .00 1 attract .14 error2 -5.24 1.02 .1 8 .53 19.02 0 .0 height rating Example 11: Model A A nonrecursive, two-group model Felson and Bohrnstedt (1979) girls' data Unstandardized estimates The following is the path diagram with the estimates for the boys: 16.24 GPA .01 .02 academic 1 error1 .06 -.01 .51 42.09 2 .0 -15.64 1.39 588.61 .20 weight .16 .00 attract 1 error2 -4.23 .94 rating .1 0 -1.51 11.57 height Example 11: Model A A nonrecursive, two-group model Felson and Bohrnstedt (1979) boys' data Unstandardized estimates You can visually inspect the girls’ and boys’ estimates in Model A, looking for sex differences. To find out if girls and boys differ significantly with respect to any single parameter, you could examine the table of critical ratios of differences among all pairs of free parameters. 182 Example 11 Obtaining Critical Ratios for Parameter Differences E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Select Critical ratios for differences. In this example, however, we will not use critical ratios for differences; instead, we will take an alternative approach to looking for group differences. Model B for Girls and Boys Suppose we are mainly interested in the regression weights, and we hypothesize (Model B) that girls and boys have the same regression weights. In this model, the variances and covariances of the exogenous variables are still allowed to differ from one group to another. This model allows the distribution of variables such as height and weight to be different for boys than for girls while requiring the linear dependencies among 183 Felson and Bohrnstedt’s Girls and Boys variables to be group-invariant. For Model B, you need to constrain six regression weights in each group. E First, display the girls’ path diagram by clicking girls in the Groups panel at the left of the path diagram. E Right-click one of the single-headed arrows and choose Object Properties from the pop- up menu. E In the Object Properties dialog box, click the Parameters tab. E Enter a name in the Regression weight text box. E Select All groups. A check mark appears next to it. The effect of the check mark is to assign the same name to this regression weight in all groups. E Keeping the Object Properties dialog box open, click another single-headed arrow and enter another name in the Regression weight text box. 184 Example 11 E Repeat this until you have named every regression weight. Always make sure to select (put a check mark next to) All groups. After you have named all of the regression weights, the path diagram for each sample should look something like this: GPA p1 academic p6 height 1 error1 p2 p3 rating p4 attract p5 weight Results for Model B Text Output Model B fits the data very well. Chi-square = 9.493 Degrees of freedom = 10 Probability level = 0.486 1 error2 185 Felson and Bohrnstedt’s Girls and Boys Comparing Model B against Model A gives a nonsignificant chi-square of 9.493 – 3.183 = 6.310 with 10 – 4 = 6 degrees of freedom. Assuming that Model B is indeed correct, the Model B estimates are preferable over the Model A estimates. The unstandardized parameter estimates for the girls’ sample are: Regression Weights: (girls - Default model) academic <--attract <--attract <--attract <--attract <--academic <--- GPA height weight rating academic attract Estimate .022 .008 -.003 .145 1.448 .018 S.E. .002 .007 .001 .020 .232 .039 C.R. 9.475 1.177 -2.453 7.186 6.234 .469 P *** .239 .014 *** *** .639 Label p1 p3 p4 p5 p6 p2 Covariances: (girls - Default model) GPA <--> rating height <--> rating GPA <--> weight GPA <--> height height <--> weight weight <--> rating error1 <--> error2 Estimate .526 -.468 -6.710 1.819 19.024 -5.243 -.004 S.E. .246 .205 4.676 .712 4.098 1.395 .008 C.R. 2.139 -2.279 -1.435 2.555 4.642 -3.759 -.464 P .032 .023 .151 .011 *** *** .643 Label Variances: (girls - Default model) GPA height weight rating error1 error2 Estimate S.E. C.R. 12.122 1.189 10.198 8.428 .826 10.198 371.476 36.427 10.198 1.015 .100 10.198 .018 .003 7.111 .144 .014 10.191 P *** *** *** *** *** *** Label 186 Example 11 The unstandardized parameter estimates for the boys are: Regression Weights: (boys - Default model) academic <--attract <--attract <--attract <--attract <--academic <--- GPA height weight rating academic attract Estimate S.E. C.R. .022 .002 9.475 .008 .007 1.177 -.003 .001 -2.453 .145 .020 7.186 1.448 .232 6.234 .018 .039 .469 P *** .239 .014 *** *** .639 Label p1 p3 p4 p5 p6 p2 Covariances: (boys - Default model) GPA <--> rating height <--> rating GPA <--> weight GPA <--> height height <--> weight weight <--> rating error1 <--> error2 Estimate S.E. C.R. .507 .274 1.850 .198 .230 .860 -15.645 6.899 -2.268 -1.508 .961 -1.569 42.091 6.455 6.521 -4.226 1.662 -2.543 -.004 .008 -.466 P .064 .390 .023 .117 *** .011 .641 Label Variances: (boys - Default model) GPA height weight rating error1 error2 Estimate S.E. C.R. P 16.243 1.600 10.149 *** 11.572 1.140 10.149 *** 588.605 57.996 10.149 *** .936 .092 10.149 *** .016 .002 7.220 *** .167 .016 10.146 *** Label As Model B requires, the estimated regression weights for the boys are the same as those for the girls. 187 Felson and Bohrnstedt’s Girls and Boys Graphics Output The output path diagram for the girls is: 12.12 GPA .02 1 academic .02 error1 1.45 .00 .02 .53 19.02 1 .0 -6.71 height 371.48 -.47 weight .00 1 attract .14 error2 -5.24 1.02 rating .1 5 1.82 8.43 Example 11: Model B A nonrecursive, two-group model Felson and Bohrnstedt (1979) girls' data Unstandardized estimates And the output for the boys is: 16.24 GPA .02 academic 1 .02 error1 .00 .02 .51 42.09 1 .0 -15.64 1.45 588.61 .20 weight .00 attract 1 .17 error2 -4.23 .94 rating .1 5 -1.51 11.57 height Example 11: Model B A nonrecursive, two-group model Felson and Bohrnstedt (1979) boys' data Unstandardized estimates 188 Example 11 Fitting Models A and B in a Single Analysis It is possible to fit both Model A and Model B in the same analysis. The file Ex11-ab.amw in the Amos Examples directory shows how to do this. Model C for Girls and Boys You might consider adding additional constraints to Model B, such as requiring every parameter to have the same value for boys as for girls. This would imply that the entire variance/covariance matrix of the observed variables is the same for boys as for girls, while also requiring that the Felson and Bohrnstedt model be correct for both groups. Instead of following this course, we will now abandon the Felson and Bohrnstedt model and concentrate on the hypothesis that the observed variables have the same variance/covariance matrix for girls and boys. We will construct a model (Model C) that embodies this hypothesis. E Start with the path diagram for Model A or Model B and delete (Edit > Erase) every object in the path diagram except the six observed variables. The path diagram will then look something like this: Each pair of rectangles needs to be connected by a double-headed arrow, for a total of 15 double-headed arrows. 189 Felson and Bohrnstedt’s Girls and Boys E To improve the appearance of the results, from the menus, choose Edit > Move and use the mouse to arrange the six rectangles in a single column like this: The Drag properties option can be used to put the rectangles in perfect vertical alignment. E From the menus, choose Edit > Drag properties. E In the Drag Properties dialog box, select height, width, and X-coordinate. A check mark will appear next to each one. E Use the mouse to drag these properties from academic to attract. This gives attract the same x coordinate as academic. In other words, it aligns them vertically. It also makes attract the same size as academic if they are not already the same size. E Then drag from attract to GPA, GPA to height, and so on. Keep this up until all six variables are lined up vertically. 190 Example 11 E To even out the spacing between the rectangles, from the menus, choose Edit > Select All. E Then choose Edit > Space Vertically. There is a special button for drawing large numbers of double-headed arrows at once. With all six variables still selected from the previous step: E From the menus, choose Tools > Macro > Draw Covariances. Amos draws all possible covariance paths among the selected variables. 191 Felson and Bohrnstedt’s Girls and Boys E Label all variances and covariances with suitable names; for example, label them with letters a through u. In the Object Properties dialog box, always put a check mark next to All groups when you name a parameter. E From the menus, choose Analyze > Manage Models and create a second group for the boys. E Choose File > Data Files and specify the boys’ dataset (Fels_mal.sav) for this group. The file Ex11-c.amw contains the model specification for Model C. Here is the input path diagram, which is the same for both groups: a academic b g attract c h GPA d p k n o q r s weight f j m height e i l t u rating Example 11: Model C Test of variance/covariance homogeneity Felson and Bohrnstedt (1979) girls' data Model Specification Results for Model C Model C has to be rejected at any conventional significance level. Chi-square = 48.977 Degrees of freedom = 21 Probability level = 0.001 This result means that you should not waste time proposing models that allow no differences at all between boys and girls. 192 Example 11 Modeling in VB.NET Model A The following program fits Model A. It is saved as Ex11-a.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.BeginGroup(Sem.AmosDir & "Examples\Fels_fem.sav") Sem.GroupName("girls") Sem.AStructure("academic = GPA + attract + error1 (1)") Sem.AStructure _ ("attract = height + weight + rating + academic + error2 (1)") Sem.AStructure("error2 <--> error1") Sem.BeginGroup(Sem.AmosDir & "Examples\Fels_mal.sav") Sem.GroupName("boys") Sem.AStructure("academic = GPA + attract + error1 (1)") Sem.AStructure _ ("attract = height + weight + rating + academic + error2 (1)") Sem.AStructure("error2 <--> error1") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 193 Felson and Bohrnstedt’s Girls and Boys Model B The following program fits Model B, in which parameter labels p1 through p6 are used to impose equality constraints across groups. The program is saved in Ex11-b.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.BeginGroup(Sem.AmosDir & "Examples\Fels_fem.sav") Sem.GroupName("girls") Sem.AStructure("academic = (p1) GPA + (p2) attract + (1) error1") Sem.AStructure("attract = " & _ "(p3) height + (p4) weight + (p5) rating + (p6) academic + (1) error2") Sem.AStructure("error2 <--> error1") Sem.BeginGroup(Sem.AmosDir & "Examples\Fels_mal.sav") Sem.GroupName("boys") Sem.AStructure("academic = (p1) GPA + (p2) attract + (1) error1") Sem.AStructure("attract = " & _ "(p3) height + (p4) weight + (p5) rating + (p6) academic + (1) error2") Sem.AStructure("error2 <--> error1") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Model C The VB.NET program for Model C is not displayed here. It is saved in the file Ex11-c.vb. 194 Example 11 Fitting Multiple Models The following program fits both Models A and B. The program is saved in the file Ex11-ab.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.BeginGroup(Sem.AmosDir & "Examples\Fels_fem.sav") Sem.GroupName("girls") Sem.AStructure("academic = (g1) GPA + (g2) attract + (1) error1") Sem.AStructure("attract = " & _ "(g3) height + (g4) weight + (g5) rating + (g6) academic + (1) error2") Sem.AStructure("error2 <--> error1") Sem.BeginGroup(Sem.AmosDir & "Examples\Fels_mal.sav") Sem.GroupName("boys") Sem.AStructure("academic = (b1) GPA + (b2) attract + (1) error1") Sem.AStructure("attract = " & _ "(b3) height + (b4) weight + (b5) rating + (b6) academic + (1) error2") Sem.AStructure("error2 <--> error1") Sem.Model("Model_A") Sem.Model("Model_B", _ "g1=b1", "g2=b2", "g3=b3", "g4=b4", "g5=b5", "g6=b6") Sem.FitAllModels() Finally Sem.Dispose() End Try End Sub Example 12 Simultaneous Factor Analysis for Several Groups Introduction This example demonstrates how to test whether the same factor analysis model holds for each of several populations, possibly with different parameter values for different populations (Jöreskog, 1971). About the Data We will use the Holzinger and Swineford (1939) data described in Example 8. This time, however, data from the 72 boys in the Grant-White sample will be analyzed along with data from the 73 girls studied in Example 8. The girls’ data are in the file Grnt_fem.sav and were described in Example 8. The following is a sample of the boys’ data in the file, Grnt_mal.sav: 195 196 Example 12 Model A for the Holzinger and Swineford Boys and Girls Consider the hypothesis that the common factor analysis model of Example 8 holds for boys as well as for girls. The path diagram from Example 8 can be used as a starting point for this two-group model. By default, Amos Graphics assumes that both groups have the same path diagram, so the path diagram does not have to be drawn a second time for the second group. In Example 8, where there was only one group, the name of the group didn’t matter. Accepting the default name Group number 1 was good enough. Now that there are two groups to keep track of, the groups should be given meaningful names. Naming the Groups E From the menus, choose Analyze > Manage Groups. E In the Manage Groups dialog box, type Girls for Group Name. 197 Simultaneous Factor Analysis for Several Groups E While the Manage Groups dialog box is open, create another group by clicking New. E Then, type Boys in the Group Name text box. E Click Close to close the Manage Groups dialog box. Specifying the Data E From the menus, choose File > Data Files. E In the Data Files dialog box, double-click Girls and specify the data file grnt_fem.sav. E Then double-click Boys and specify the data file grnt_mal.sav. E Click OK to close the Data Files dialog box. 198 Example 12 Your path diagram should look something like this for the girls’ sample: 1 spatial visperc cubes lozenges 1 verbal paragrap sentence wordmean 1 1 1 1 1 1 err_v err_c err_l err_p err_s err_w Example 12: Model A Factor analysis: Girls' sample Holzinger and Swineford (1939) Model Specification The boys’ path diagram is identical. Note, however, that the parameter estimates are allowed to be different for the two groups. Results for Model A Text Output In the calculation of degrees of freedom for this model, all of the numbers from Example 8 are exactly doubled. Computation of degrees of freedom: (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (42 – 26): 42 26 16 199 Simultaneous Factor Analysis for Several Groups Model A is acceptable at any conventional significance level. If Model A had been rejected, we would have had to make changes in the path diagram for at least one of the two groups. Chi-square = 16.480 Degrees of freedom = 16 Probability level = 0.420 Graphics Output Here are the (unstandardized) parameter estimates for the 73 girls. They are the same estimates that were obtained in Example 8 where the girls alone were studied. Chi-square = 16.480 (16 df) p = .420 23.30 spatial 1.00 .61 1.20 visperc cubes lozenges 23.87 1 err_v 11.60 1 err_c 28.28 1 err_l 7.32 9.68 verbal 1.00 1.33 2.23 paragrap sentence wordmean 2.83 1 err_p 7.97 1 1 err_s 19.93 err_w Example 12: Model A Factor analysis: Girls' sample Holzinger and Swineford (1939) Unstandardized estimates 200 Example 12 The corresponding output path diagram for the 72 boys is: Chi-square = 16.480 (16 df) p = .420 16.06 1.00 .45 spatial 1.51 visperc cubes lozenges 1 1 1 31.57 err_v 15.69 err_c 36.53 err_l 6.84 6.90 verbal 1.00 1.28 2.29 paragrap sentence wordmean 1 1 1 2.36 err_p 6.04 err_s 19.70 err_w Example 12: Model A Factor analysis: Boys' sample Holzinger and Swineford (1939) Unstandardized estimates Notice that the estimated regression weights vary little across groups. It seems plausible that the two populations have the same regression weights—a hypothesis that we will test in Model B. Model B for the Holzinger and Swineford Boys and Girls We now accept the hypothesis that boys and girls have the same path diagram. The next step is to ask whether boys and girls have the same parameter values. The next model (Model B) does not go as far as requiring that every parameter for the population of boys be equal to the corresponding parameter for girls. It does require that the factor pattern (that is, the regression weights) be the same for both groups. Model B still permits different unique variances for boys and girls. The common factor variances and covariances may also differ across groups. E Take Model A as a starting point for Model B. E First, display the girls’ path diagram by clicking Girls in the Groups panel at the left of the path diagram. 201 Simultaneous Factor Analysis for Several Groups E Right-click the arrow that points from spatial to cubes and choose Object Properties from the pop-up menu. E In the Object Properties dialog box, click the Parameters tab. E Type cube_s in the Regression weight text box. E Select All groups. A check mark appears next to it. The effect of the check mark is to assign the same name to this regression weight in both groups. E Leaving the Object Properties dialog box open, click each of the remaining single- headed arrows in turn, each time typing a name in the Regression weight text box. Keep this up until you have named every regression weight. Always make sure to select (put a check mark next to) All groups. (Any regression weights that are already fixed at 1 should be left alone.) 202 Example 12 The path diagram for either of the two samples should now look something like this: 1 spatial verbal cube_s visperc cubes lozn_s lozenges 1 paragrap sent_v word_v sentence wordmean 1 1 1 1 1 1 err_v err_c err_l err_p err_s err_w Results for Model B Text Output Because of the additional constraints in Model B, four fewer parameters have to be estimated from the data, increasing the number of degrees of freedom by 4. Computation of degrees of freedom: (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (42 – 20): 42 22 20 The chi-square fit statistic is acceptable. Chi-square = 18.292 Degrees of freedom = 20 Probability level = 0.568 The chi-square difference between Models A and B, 18.292 – 16.480 = 1.812 , is not significant at any conventional level, either. Thus, Model B, which specifies a group-invariant factor pattern, is supported by the Holzinger and Swineford data. 203 Simultaneous Factor Analysis for Several Groups Graphics Output Here are the parameter estimates for the 73 girls: Chi-square = 18.292 (20 df) p = .568 1.00 visperc 1 25.08 err_v 22.00 spatial .56 cubes 1.33 lozenges 1.00 paragrap 1 1 7.22 1 12.38 err_c 25.24 err_l 2.83 err_p 9.72 verbal 1.31 2.26 sentence wordmean 1 1 Example 12: Model B Factor analysis: Girls' sample Holzinger and Swineford (1939) Unstandardized estimates 8.12 err_s 19.55 err_w 204 Example 12 Here are the parameter estimates for the 72 boys: Chi-square = 18.292 (20 df) p = .568 1.00 visperc 31.56 1 err_v 16.18 spatial .56 cubes 1.33 lozenges 1.00 paragrap 15.25 1 err_c 40.97 1 err_l 7.00 2.36 1 err_p 6.87 verbal 1.31 2.26 sentence wordmean 5.95 1 err_s 19.94 1 err_w Example 12: Model B Factor analysis: Boys' sample Holzinger and Swineford (1939) Unstandardized estimates Not surprisingly, the Model B parameter estimates are different from the Model A estimates. The following table shows estimates and standard errors for the two models side by side: Parameters Model A Model B Girls’ sample Estimate Standard Error Estimate Standard Error g: cubes <--- spatial g: lozenges <--- spatial g: sentence <--- verbal g: wordmean <--- verbal g: spatial <---> verbal g: var(spatial) g: var(verbal) g: var(err_v) g: var(err_c) g: var(err_l) g: var(err_p) g: var(err_s) g: var(err_w) 0.610 1.198 1.334 2.234 7.315 23.302 9.682 23.873 11.602 28.275 2.834 7.967 19.925 0.143 0.272 0.160 0.263 2.571 8.124 2.159 5.986 2.584 7.892 0.869 1.869 4.951 0.557 1.327 1.305 2.260 7.225 22.001 9.723 25.082 12.382 25.244 2.835 8.115 19.550 0.114 0.248 0.117 0.200 2.458 7.078 2.025 5.832 2.481 8.040 0.834 1.816 4.837 205 Simultaneous Factor Analysis for Several Groups Boys’ sample Estimate Standard Error Estimate Standard Error b: cubes <--- spatial b: lozenges <--- spatial b: sentence <--- verbal b: wordmean <--- verbal b: spatial <---> verbal b: var(spatial) b: var(verbal) b: var(err_v) b: var(err_c) b: var(err_l) b: var(err_p) b: var(err_s) b: var(err_w) 0.450 1.510 1.275 2.294 6.840 16.058 6.904 31.571 15.693 36.526 2.364 6.035 19.697 0.176 0.461 0.171 0.308 2.370 7.516 1.622 6.982 2.904 11.532 0.726 1.433 4.658 0.557 1.327 1.305 2.260 6.992 16.183 6.869 31.563 15.245 40.974 2.363 5.954 19.937 0.114 0.248 0.117 0.200 2.090 5.886 1.465 6.681 2.934 9.689 0.681 1.398 4.470 All but two of the estimated standard errors are smaller in Model B, including those for the unconstrained parameters. This is a reason to use Model B for parameter estimation rather than Model A, assuming, of course, that Model B is correct. 206 Example 12 Modeling in VB.NET Model A The following program (Ex12-a.vb) fits Model A for boys and girls: Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_fem.sav") Sem.GroupName("Girls") Sem.AStructure("visperc = (1) spatial + (1) err_v") Sem.AStructure("cubes = spatial + (1) err_c") Sem.AStructure("lozenges = spatial + (1) err_l") Sem.AStructure("paragrap = (1) verbal + (1) err_p") Sem.AStructure("sentence = verbal + (1) err_s") Sem.AStructure("wordmean = verbal + (1) err_w") Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_mal.sav") Sem.GroupName("Boys") Sem.AStructure("visperc = (1) spatial + (1) err_v") Sem.AStructure("cubes = spatial + (1) err_c") Sem.AStructure("lozenges = spatial + (1) err_l") Sem.AStructure("paragrap = (1) verbal + (1) err_p") Sem.AStructure("sentence = verbal + (1) err_s") Sem.AStructure("wordmean = verbal + (1) err_w") Sem.FitModel() Finally Sem.Dispose() End Try End Sub The same model is specified for boys as for girls. However, the boys’ parameter values can be different from the corresponding girls’ parameters. 207 Simultaneous Factor Analysis for Several Groups Model B Here is a program for fitting Model B, in which some parameters are identically named so that they are constrained to be equal. The program is saved as Ex12-b.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_fem.sav") Sem.GroupName("Girls") Sem.AStructure("visperc = (1) spatial + (1) err_v") Sem.AStructure("cubes = (cube_s) spatial + (1) err_c") Sem.AStructure("lozenges = (lozn_s) spatial + (1) err_l") Sem.AStructure("paragrap = (1) verbal + (1) err_p") Sem.AStructure("sentence = (sent_v) verbal + (1) err_s") Sem.AStructure("wordmean = (word_v) verbal + (1) err_w") Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_mal.sav") Sem.GroupName("Boys") Sem.AStructure("visperc = (1) spatial + (1) err_v") Sem.AStructure("cubes = (cube_s) spatial + (1) err_c") Sem.AStructure("lozenges = (lozn_s) spatial + (1) err_l") Sem.AStructure("paragrap = (1) verbal + (1) err_p") Sem.AStructure("sentence = (sent_v) verbal + (1) err_s") Sem.AStructure("wordmean = (word_v) verbal + (1) err_w") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Example 13 Estimating and Testing Hypotheses about Means Introduction This example demonstrates how to estimate means and how to test hypotheses about means. In large samples, the method demonstrated is equivalent to multivariate analysis of variance. Means and Intercept Modeling Amos and similar programs are usually used to estimate variances, covariances, and regression weights, and to test hypotheses about those parameters. Means and intercepts are not usually estimated, and hypotheses about means and intercepts are not usually tested. At least in part, means and intercepts have been left out of structural equation modeling because of the relative difficulty of specifying models that include those parameters. Amos, however, was designed to make means and intercept modeling easy. The present example is the first of several showing how to estimate means and intercepts and test hypotheses about them. In this example, the model parameters consist only of variances, covariances, and means. Later examples introduce regression weights and intercepts in regression equations. 209 210 Example 13 About the Data For this example, we will be using Attig’s (1983) memory data, which was described in Example 1. We will use data from both young and old subjects. The raw data for the two groups are contained in the Microsoft Excel workbook UserGuide.xls, in the Attg_yng and Attg_old worksheets. In this example, we will be using only the measures recall1 and cued1. Model A for Young and Old Subjects In the analysis of Model B of Example 10, we concluded that recall1 and cued1 have the same variances and covariance for both old and young people. At least, the evidence against that hypothesis was found to be insignificant. Model A in the present example replicates the analysis in Example 10 of Model B with an added twist. This time, the means of the two variables recall1 and cued1 will also be estimated. Mean Structure Modeling in Amos Graphics In Amos Graphics, estimating and testing hypotheses involving means is not too different from analyzing variance and covariance structures. Take Model B of Example 10 as a starting point. Young and old subjects had the same path diagram: var_rec var_cue recall1 cued1 cov_rc The same parameter names were used in both groups, which had the effect of requiring parameter estimates to be the same in both groups. Means and intercepts did not appear in Example 10. To introduce means and intercepts into the model: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Estimation tab. 211 Estimating and Testing Hypotheses about Means E Select Estimate means and intercepts. Now the path diagram looks like this (the same path diagram for each group): ,var_rec ,var_cue recall1 cued1 cov_rc The path diagram now shows a mean, variance pair of parameters for each exogenous variable. There are no endogenous variables in this model and hence no intercepts. For each variable in the path diagram, there is a comma followed by the name of a variance. There is only a blank space preceding each comma because the means in the model have not yet been named. When you choose Calculate Estimates from the Analyze menu, Amos will estimate two means, two variances, and a covariance for each group. The variances and the covariance will be constrained to be equal across groups, while the means will be unconstrained. 212 Example 13 The behavior of Amos Graphics changes in several ways when you select (put a check mark next to) Estimate means and intercepts: Mean and intercept fields appear on the Parameters tab in the Object Properties dialog box. Constraints can be applied to means and intercepts as well as regression weights, variances, and covariances. From the menus, choosing Analyze > Calculate Estimates estimates means and intercepts—subject to constraints, if any. You have to provide sample means if you provide sample covariances as input. When you do not put a check mark next to Estimate means and intercepts: Only fields for variances, covariances, and regression weights are displayed on the Parameters tab in the Object Properties dialog box. Constraints can be placed only on those parameters. When Calculate Estimates is chosen, Amos estimates variances, covariances, and regression weights, but not means or intercepts. You can provide sample covariances as input without providing sample means. If you do provide sample means, they are ignored. If you remove the check mark next to Estimate means and intercepts after a means model has already been fitted, the output path diagram will continue to show means and intercepts. To display the correct output path diagram without means or intercepts, recalculate the model estimates after removing the check mark next to Estimate means and intercepts. With these rules, the Estimate mean and intercepts check box makes estimating and testing means models as easy as traditional path modeling. Results for Model A Text Output The number of degrees of freedom for this model is the same as in Example 10, Model B, but we arrive at it in a different way. This time, the number of distinct sample moments includes the sample means as well as the sample variances and covariances. In the young sample, there are two variances, one covariance, and two means, for a total of five sample moments. Similarly, there are five sample moments in the old 213 Estimating and Testing Hypotheses about Means sample. So, taking both samples together, there are 10 sample moments. As for the parameters to be estimated, there are seven of them, namely var_rec (the variance of recall1), var_cue (the variance of cued1), cov_rc (the covariance between recall1 and cued1), the means of recall1 among young and old people (2), and the means of cued1 among young and old people (2). The number of degrees of freedom thus works out to be: Computation of degrees of freedom (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (10 - 7): 10 7 3 The chi-square statistic here is also the same as in Model B of Example 10. The hypothesis that old people and young people share the same variances and covariance would be accepted at any conventional significance level. Chi-square = 4.588 Degrees of freedom = 3 Probability level = 0.205 Here are the parameter estimates for the 40 young subjects: Means: (young subjects - Default model) recall1 cued1 Estimate S.E. C.R. P 10.250 .382 26.862 *** 11.700 .374 31.292 *** Label Covariances: (young subjects - Default model) Estimate S.E. C.R. P 4.056 .780 5.202 *** recall1 <--> cued1 Label cov_rc Variances: (young subjects - Default model) recall1 cued1 Estimate S.E. C.R. P 5.678 .909 6.245 *** 5.452 .873 6.245 *** Label var_rec var_cue Here are the estimates for the 40 old subjects: Means: (old subjects - Default model) recall1 cued1 Estimate S.E. C.R. P 8.675 .382 22.735 *** 9.575 .374 25.609 *** Label Covariances: (old subjects - Default model) recall1 <--> cued1 Estimate S.E. C.R. P 4.056 .780 5.202 *** Label cov_rc Variances: (old subjects - Default model) recall1 cued1 Estimate S.E. C.R. P 5.678 .909 6.245 *** 5.452 .873 6.245 *** Label var_rec var_cue 214 Example 13 Except for the means, these estimates are the same as those obtained in Example 10, Model B. The estimated standard errors and critical ratios are also the same. This demonstrates that merely estimating means, without placing any constraints on them, has no effect on the estimates of the remaining parameters or their standard errors. Graphics Output The path diagram output for the two groups follows. Each variable has a mean, variance pair displayed next to it. For instance, for young subjects, variable recall1 has an estimated mean of 10.25 and an estimated variance of 5.68. 10.25, 5.68 11.70, 5.45 8.68, 5.68 9.58, 5.45 recall1 cued1 recall1 cued1 4.06 Example 13: Model A Homogenous covariance structures Attig (1983) young subjects Unstandardized estimates 4.06 Example 13: Model A Homogenous covariance structures Attig (1983) old subjects Unstandardized estimates Model B for Young and Old Subjects From now on, assume that Model A is correct, and consider the more restrictive hypothesis that the means of recall1 and cued1 are the same for both groups. To constrain the means for recall1 and cued1: E Right-click recall1 and choose Object Properties from the pop-up menu. E In the Object Properties dialog box, click the Parameters tab. 215 Estimating and Testing Hypotheses about Means E You can enter either a numeric value or a name in the Mean text box. For now, type the name mn_rec. E Select All groups. (A check mark appears next to it. The effect of the check mark is to assign the name mn_rec to the mean of recall1 in every group, requiring the mean of recall1 to be the same for all groups.) E After giving the name mn_rec to the mean of recall1, follow the same steps to give the name mn_cue to the mean of cued1. The path diagrams for the two groups should now look like this: mn_rec, var_rec recall1 mn_cue, var_cue cued1 mn_rec, var_rec recall1 mn_cue, var_cue cued1 cov_rc cov_rc Example 13: Model B Invariant means and (co-)variances Attig (1983) young subjects Model Specification Example 13: Model B Invariant means and (co-)variances Attig (1983) old subjects Model Specification These path diagrams are saved in the file Ex13-b.amw. 216 Example 13 Results for Model B With the new constraints on the means, Model B has five degrees of freedom. Computation of degrees of freedom (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (10 - 5): 10 5 5 Model B has to be rejected at any conventional significance level. Chi-square = 19.267 Degrees of freedom = 5 Probability level = 0.002 Comparison of Model B with Model A If Model A is correct and Model B is wrong (which is plausible, since Model A was accepted and Model B was rejected), then the assumption of equal means must be wrong. A better test of the hypothesis of equal means under the assumption of equal variances and covariances can be obtained in the following way: In comparing Model B with Model A, the chi-square statistics differ by 14.679, with a difference of 2 in degrees of freedom. Since Model B is obtained by placing additional constraints on Model A, we can say that, if Model B is correct, then 14.679 is an observation on a chi-square variable with two degrees of freedom. The probability of obtaining this large a chi-square value is 0.001. Therefore, we reject Model B in favor of Model A, concluding that the two groups have different means. The comparison of Model B against Model A is as close as Amos can come to conventional multivariate analysis of variance. In fact, the test in Amos is equivalent to a conventional MANOVA, except that the chi-square test provided by Amos is only asymptotically correct. By contrast, MANOVA, for this example, provides an exact test. Multiple Model Input It is possible to fit both Model A and Model B in a single analysis. The file Ex13-all.amw shows how to do this. One benefit of fitting both models in a single analysis is that Amos will recognize that the two models are nested and will 217 Estimating and Testing Hypotheses about Means automatically compute the difference in chi-square values as well as the p value for testing Model B against Model A. Mean Structure Modeling in VB.NET Model A Here is a program (Ex13-a.vb) for fitting Model A. The program keeps the variance and covariance restrictions that were used in Example 10, Model B, and, in addition, places constraints on the means. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_yng") Sem.GroupName("young_subjects") Sem.AStructure("recall1 (var_rec)") Sem.AStructure("cued1 (var_cue)") Sem.AStructure("recall1 <> cued1 (cov_rc)") Sem.Mean("recall1") Sem.Mean("cued1") Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_old") Sem.GroupName("old_subjects") Sem.AStructure("recall1 (var_rec)") Sem.AStructure("cued1 (var_cue)") Sem.AStructure("recall1 <> cued1 (cov_rc)") Sem.Mean("recall1") Sem.Mean("cued1") Sem.FitModel() Finally Sem.Dispose() End Try End Sub The ModelMeansAndIntercepts method is used to specify that means (of exogenous variables) and intercepts (in predicting endogenous variables) are to be estimated as explicit model parameters. The Mean method is used twice in each group in order to estimate the means of recall1 and cued1. If the Mean method had not been used in this program, recall1 and cued1 would have had their means fixed at 0. When you use the ModelMeansAndIntercepts method in an Amos program, Amos assumes that each 218 Example 13 exogenous variable has a mean of 0 unless you specify otherwise. You need to use the Model method once for each exogenous variable whose mean you want to estimate. It is easy to forget that Amos programs behave this way when you use ModelMeansAndIntercepts. Note: If you use the Sem.ModelMeansAndIntercepts method in an Amos program, then the Mean method must be called once for each exogenous variable whose mean you want to estimate. Any exogenous variable that is not explicitly estimated through use of the Mean method is assumed to have a mean of 0. This is different from Amos Graphics, where putting a check mark next to Estimate means and intercepts causes the means of all exogenous variables to be treated as free parameters except for those means that are explicitly constrained. Model B The following program (Ex13-b.vb) fits Model B. In addition to requiring group-invariant variances and covariances, the program also requires the means to be equal across groups. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_yng") Sem.GroupName("young_subjects") Sem.AStructure("recall1 (var_rec)") Sem.AStructure("cued1 (var_cue)") Sem.AStructure("recall1 <> cued1 (cov_rc)") Sem.Mean("recall1", "mn_rec") Sem.Mean("cued1", "mn_cue") Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_old") Sem.GroupName("old_subjects") Sem.AStructure("recall1 (var_rec)") Sem.AStructure("cued1 (var_cue)") Sem.AStructure("recall1 <> cued1 (cov_rc)") Sem.Mean("recall1", "mn_rec") Sem.Mean("cued1", "mn_cue") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 219 Estimating and Testing Hypotheses about Means Fitting Multiple Models Both models A and B can be fitted by the following program. It is saved as Ex13-all.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_yng") Sem.GroupName("young subjects") Sem.AStructure("recall1 (var_rec)") Sem.AStructure("cued1 (var_cue)") Sem.AStructure("recall1 <> cued1 (cov_rc)") Sem.Mean("recall1", "yng_rec") Sem.Mean("cued1", "yng_cue") Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Attg_old") Sem.GroupName("old subjects") Sem.AStructure("recall1 (var_rec)") Sem.AStructure("cued1 (var_cue)") Sem.AStructure("recall1 <> cued1 (cov_rc)") Sem.Mean("recall1", "old_rec") Sem.Mean("cued1", "old_cue") Sem.Model("Model_A", "") Sem.Model("Model_B", "yng_rec = old_rec", "yng_cue = old_cue") Sem.FitAllModels() Finally Sem.Dispose() End Try End Sub Example 14 Regression with an Explicit Intercept Introduction This example shows how to estimate the intercept in an ordinary regression analysis. Assumptions Made by Amos Ordinarily, when you specify that some variable depends linearly on some others, Amos assumes that the linear equation expressing the dependency contains an additive constant, or intercept, but does not estimate it. For instance, in Example 4, we specified the variable performance to depend linearly on three other variables: knowledge, value, and satisfaction. Amos assumed that the regression equation was of the following form: performance = a + b 1 × knowledge + b 2 × value + b 3 × satisfaction + error where b 1 , b 2 , and b 3 are regression weights, and a is the intercept. In Example 4, the regression weights b 1 through b 3 were estimated. Amos did not estimate a in Example 4, and it did not appear in the path diagram. Nevertheless, b 1 , b 2 , and b 3 were estimated under the assumption that a was present in the regression equation. Similarly, knowledge, value, and satisfaction were assumed to have means, but their means were not estimated and did not appear in the path diagram. You will usually be satisfied with this method of handling means and intercepts in regression equations. Sometimes, however, you will want to see an estimate of an intercept or to test a hypothesis about an intercept. For that, you will need to take the steps demonstrated in this example. 221 222 Example 14 About the Data We will once again use the data of Warren, White, and Fuller (1974), first used in Example 4. We will use the Excel worksheet Warren5v in UserGuide.xls found in the Examples directory. Here are the sample moments (means, variances, and covariances): Specifying the Model You can specify the regression model exactly as you did in Example 4. In fact, if you have already worked through Example 4, you can use that path diagram as a starting point for this example. Only one change is required to get Amos to estimate the means and the intercept. E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Estimation tab. E Select Estimate means and intercepts. Your path diagram should then look like this: 223 Regression with an Explicit Intercept knowledge 0, value performance 1 error satisfaction Example 14 Job Performance of Farm Managers Regression with an explicit intercept (Model Specification) Notice the string 0, displayed above the error variable. The 0 to the left of the comma indicates that the mean of the error variable is fixed at 0, a standard assumption in linear regression models. The absence of anything to the right of the comma in 0, means that the variance of error is not fixed at a constant and does not have a name. With a check mark next to Estimate means and intercepts, Amos will estimate a mean for each of the predictors, and an intercept for the regression equation that predicts performance. Results of the Analysis Text Output The present analysis gives the same results as in Example 4 but with the explicit estimation of three means and an intercept. The number of degrees of freedom is again 0, but the calculation of degrees of freedom goes a little differently. Sample means are required for this analysis; therefore, the number of distinct sample moments includes the sample means as well as the sample variances and covariances. There are four sample means, four sample variances, and six sample covariances, for a total of 14 sample moments. As for the parameters to be estimated, there are three regression weights and an intercept. Also, the three predictors have among them three means, three variances, and three covariances. Finally, there is one error variance, for a total of 14 parameters to be estimated. 224 Example 14 Computation of degrees of freedom (Default model) Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (14 - 14): 14 14 0 With 0 degrees of freedom, there is no hypothesis to be tested. Chi-square = 0.000 Degrees of freedom = 0 Probability level cannot be computed The estimates for regression weights, variances, and covariances are the same as in Example 4, and so are the associated standard error estimates, critical ratios, and p values. Regression Weights: (Group number 1 - Default model) performance <--- knowledge performance <--- value performance <--- satisfaction Estimate .258 .145 .049 S.E. .054 .035 .038 C.R. 4.822 4.136 1.274 P *** *** .203 Label Means: (Group number 1 - Default model) value knowledge satisfaction Estimate 2.877 1.380 2.461 S.E. .035 .023 .030 C.R. 81.818 59.891 81.174 P *** *** *** Label Intercepts: (Group number 1 - Default model) performance Estimate -.834 S.E. .140 C.R. -5.951 P *** Label Covariances: (Group number 1 - Default model) knowledge <--> satisfaction value <--> satisfaction knowledge <--> value Estimate .004 -.006 .028 S.E. .007 .011 .008 C.R. .632 -.593 3.276 P .528 .553 .001 Label Variances: (Group number 1 - Default model) knowledge value satisfaction error Estimate .051 .120 .089 .012 S.E. .007 .017 .013 .002 C.R. 6.964 6.964 6.964 6.964 P *** *** *** *** Label 225 Regression with an Explicit Intercept Graphics Output Below is the path diagram that shows the unstandardized estimates for this example. The intercept of –0.83 appears just above the endogenous variable performance. 1.38, .05 knowledge .26 .03 2.88, .12 .15 value .00 -.83 performance 0, .01 1 error -.01 2.46, .09 satisfaction .05 Example 14 Job Performance of Farm Managers Regression with an explicit intercept (Unstandardized estimates) Modeling in VB.NET As a reminder, here is the Amos program from Example 4 (equation version): Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.ImpliedMoments() Sem.SampleMoments() Sem.BeginGroup(Sem.AmosDir & "Examples\UserGuide.xls", "Warren5v") Sem.AStructure _ ("performance = knowledge + value + satisfaction + error (1)") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 226 Example 14 The following program for the model of Example 14 gives all the same results, plus mean and intercept estimates. This program is saved as Ex14.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.ImpliedMoments() Sem.SampleMoments() Sem.ModelMeansAndIntercepts() Sem.BeginGroup( _ Sem.AmosDir & "Examples\UserGuide.xls", "Warren5v") Sem.AStructure( _ "performance = () + knowledge + value + satisfaction + error (1)") Sem.Mean("knowledge") Sem.Mean("value") Sem.Mean("satisfaction") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Note the Sem.ModelMeansAndIntercepts statement that causes Amos to treat means and intercepts as explicit model parameters. Another change from Example 4 is that there is now an additional pair of empty parentheses and a plus sign in the AStructure line. The extra pair of empty parentheses represents the intercept in the regression equation. The Sem.Mean statements request estimates for the means of knowledge, value, and satisfaction. Each exogenous variable with a mean other than 0 has to appear as the argument in a call to the Mean method. If the Mean method had not been used in this program, Amos would have fixed the means of the exogenous variables at 0. Intercept parameters can be specified by an extra pair of parentheses in a Sem.AStructure command (as we just showed) or by using the Intercept method. In the following program, the Intercept method is used to specify that there is an intercept in the regression equation for predicting performance: 227 Regression with an Explicit Intercept Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.ImpliedMoments() Sem.SampleMoments() Sem.ModelMeansAndIntercepts() Sem.BeginGroup( _ Sem.AmosDir & "Examples\UserGuide.xls", "Warren5v") Sem.AStructure("performance <--- knowledge") Sem.AStructure("performance <--- value") Sem.AStructure("performance <--- satisfaction") Sem.AStructure("performance <--- error (1)") Sem.Intercept("performance") Sem.Mean("knowledge") Sem.Mean("value") Sem.Mean("satisfaction") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Example 15 Factor Analysis with Structured Means Introduction This example demonstrates how to estimate factor means in a common factor analysis of data from several populations. Factor Means Conventionally, the common factor analysis model does not make any assumptions about the means of any variables. In particular, the model makes no assumptions about the means of the common factors. In fact, it is not even possible to estimate factor means or to test hypotheses in a conventional, single-sample factor analysis. However, Sörbom (1974) showed that it is possible to make inferences about factor means under reasonable assumptions, as long as you are analyzing data from more than one population. Using Sörbom’s approach, you cannot estimate the mean of every factor for every population, but you can estimate differences in factor means across populations. For instance, think about Example 12, where a common factor analysis model was fitted simultaneously to a sample of girls and a sample of boys. For each group, there were two common factors, interpreted as verbal ability and spatial ability. The method used in Example 12 did not permit an examination of mean verbal ability or mean spatial ability. Sörbom’s method does. Although his method does not provide mean estimates for either girls or boys, it does give an estimate of the mean difference between girls and boys for each factor. The method also provides a test of significance for differences of factor means. 229 230 Example 15 The identification status of the factor analysis model is a difficult subject when estimating factor means. In fact, Sörbom’s accomplishment was to show how to constrain parameters so that the factor analysis model is identified and so that differences in factor means can be estimated. We will follow Sörbom’s guidelines for achieving model identification in the present example. About the Data We will use the Holzinger and Swineford (1939) data from Example 12. The girls’ dataset is in Grnt_fem.sav. The boys’ dataset is in Grnt_mal.sav. Model A for Boys and Girls Specifying the Model We need to construct a model to test the following null hypothesis: Boys and girls have the same average spatial ability and the same average verbal ability, where spatial and verbal ability are common factors. In order for this hypothesis to have meaning, the spatial and the verbal factors must be related to the observed variables in the same way for girls as for boys. This means that the girls’ regression weights and intercepts must be equal to the boys’ regression weights and intercepts. Model B of Example 12 can be used as a starting point for specifying Model A of the present example. Starting with Model B of Example 12: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Estimation tab. E Select Estimate means and intercepts (a check mark appears next to it). The regression weights are already constrained to be equal across groups. To begin constraining the intercepts to be equal across groups: E Right-click one of the observed variables, such as visperc. E Choose Object Properties from the pop-up menu. 231 Factor Analysis with Structured Means E In the Object Properties dialog box, click the Parameters tab. E Enter a parameter name, such as int_vis, in the Intercept text box. E Select All groups, so that the intercept is named int_vis in both groups. E Proceed in the same way to give names to the five remaining intercepts. As Sörbom showed, it is necessary to fix the factor means in one of the groups at a constant. We will fix the means of the boys’ spatial and verbal factors at 0. Example 13 shows how to fix the mean of a variable to a constant value. Note: When using the Object Properties dialog box to fix the boys’ factor means at 0, be sure that you do not put a check mark next to All groups. After fixing the boys’ factor means at 0, follow the same procedure to assign names to the girls’ factor means. At this point, the girls’ path diagram should look something like this: int_vis 1 mn_s, spatial 1 cube_s lozn_s visperc int_cub 1 cubes int_loz 1 lozenges int_par 1 mn_v, verbal 1 paragrap 0, err_v 0, err_c 0, err_l 0, err_p int_sen sent_v word_v sentence 1 int_wrd 1 wordmean 0, err_s 0, err_w 232 Example 15 The boys’ path diagram should look like this: int_vis 1 0, spatial cube_s lozn_s visperc 1 int_cub 1 cubes int_loz 1 lozenges int_par 1 1 0, verbal paragrap 0, err_v 0, err_c 0, err_l 0, err_p int_sen sent_v word_v sentence 1 int_wrd 1 wordmean 0, err_s 0, err_w Understanding the Cross-Group Constraints The cross-group constraints on intercepts and regression weights may or may not be satisfied in the populations. One result of fitting the model will be a test of whether these constraints hold in the populations of girls and boys. The reason for starting out with these constraints is that (as Sörbom points out) it is necessary to impose some constraints on the intercepts and regression weights in order to make the model identified when estimating factor means. These are not the only constraints that would make the model identified, but they are plausible ones. The only difference between the boys’ and girls’ path diagrams is in the constraints on the two factor means. For boys, the means are fixed at 0. For girls, both factor means are estimated. The girls’ factor means are named mn_s and mn_v, but the factor means are unconstrained because each mean has a unique name. The boys’ factor means were fixed at 0 in order to make the model identified. Sörbom showed that, even with all the other constraints imposed here, it is still not possible to estimate factor means for both boys and girls simultaneously. Take verbal ability, for example. If you fix the boys’ mean verbal ability at some constant (like 0), you can then estimate the girls’ mean verbal ability. Alternatively, you can fix the girls’ mean verbal ability at some constant, and then estimate the boys’ mean verbal ability. The bad news is that you cannot estimate both means at once. The good news is that 233 Factor Analysis with Structured Means the difference between the boys’ mean and the girls’ mean will be the same, no matter which mean you fix and no matter what value you fix for it. Results for Model A Text Output There is no reason to reject Model A at any conventional significance level. Chi-square = 22.593 Degrees of freedom = 24 Probability level = 0.544 Graphics Output We are primarily interested in estimates of mean verbal ability and mean spatial ability, and not so much in estimates of the other parameters. However, as always, all the estimates should be inspected to make sure that they are reasonable. Here are the unstandardized parameter estimates for the 73 girls: 30.14 1 1.00 visperc -1.07, 21.19 spatial 0, 25.62 err_v 25.12 .56 1 cubes 0, 12.55 err_c 16.60 1.37 lozenges 1.00 paragrap 7.19 1 9.45 .96, 9.95 verbal 1 0, 24.65 err_l 0, 2.84 err_p 18.26 1.28 2.21 sentence 1 16.22 1 wordmean 0, 8.21 err_s 0, 19.88 err_w 234 Example 15 Here are the boys’ estimates: 30.14 1 1.00 visperc 0, 15.75 spatial 0, 31.87 err_v 25.12 .56 1 cubes 0, 15.31 err_c 16.60 1.37 6.98 lozenges 1 9.45 1.00 0, 7.03 verbal paragrap 1 0, 40.71 err_l 0, 2.35 err_p 18.26 1.28 2.21 sentence 1 16.22 1 wordmean 0, 6.02 err_s 0, 20.33 err_w Girls have an estimated mean spatial ability of –1.07. We fixed the mean of boys’ spatial ability at 0. Thus, girls’ mean spatial ability is estimated to be 1.07 units below boys’ mean spatial ability. This difference is not affected by the initial decision to fix the boys’ mean at 0. If we had fixed the boys’ mean at 10.000, the girls’ mean would have been estimated to be 8.934. If we had fixed the girls’ mean at 0, the boys’ mean would have been estimated to be 1.07. What unit is spatial ability expressed in? A difference of 1.07 verbal ability units may be important or not, depending on the size of the unit. Since the regression weight for regressing visperc on spatial ability is equal to 1, we can say that spatial ability is expressed in the same units as scores on the visperc test. Of course, this is useful information only if you happen to be familiar with the visperc test. There is another approach to evaluating the mean difference of 1.07, which does not involve visperc. A portion of the text output not reproduced here shows that spatial has an estimated variance of 15.752 for boys, or a standard deviation of about 4.0. For girls, the variance of spatial is estimated to be 21.188, so that its standard deviation is about 4.6. With standard deviations this large, a difference of 1.07 would not be considered very large for most purposes. The statistical significance of the 1.07 unit difference between girls and boys is easy to evaluate. Since the boys’ mean was fixed at 0, we need to ask only whether the girls’ mean differs significantly from 0. 235 Factor Analysis with Structured Means Here are the girls’ factor mean estimates from the text output: Means: (Girls - Default model) spatial verbal Estimate -1.066 .956 S.E. .881 .521 C.R. P -1.209 .226 1.836 .066 Label mn_s mn_v The girls’ mean spatial ability has a critical ratio of –1.209 and is not significantly different from 0 ( p = 0.226 ). In other words, it is not significantly different from the boys’ mean. Turning to verbal ability, the girls’ mean is estimated 0.96 units above the boys’ mean. Verbal ability has a standard deviation of about 2.7 among boys and about 3.15 among girls. Thus, 0.96 verbal ability units is about one-third of a standard deviation in either group. The difference between boys and girls approaches significance at the 0.05 level ( p = 0.066 ). Model B for Boys and Girls In the discussion of Model A, we used critical ratios to carry out two tests of significance: a test for sex differences in spatial ability and a test for sex differences in verbal ability. We will now carry out a single test of the null hypothesis that there are no sex differences, either in spatial ability or in verbal ability. To do this, we will repeat the previous analysis with the additional constraint that boys and girls have the same mean on spatial ability and on verbal ability. Since the boys’ means are already fixed at 0, requiring the girls’ means to be the same as the boys’ means amounts to setting the girls’ means to 0 also. The girls’ factor means have already been named mn_s and mn_v. To fix the means at 0: E From the menus, choose Analyze > Manage Models. E In the Manage Models dialog box, type Model A in the Model Name text box, E Leave the Parameter Constraints box empty. 236 Example 15 E Click New. E Type Model B in the Model Name text box. E Type the constraints mn_s = 0 and mn_v = 0 in the Parameter Constraints text box. E Click Close. Now when you choose Analyze > Calculate Estimates, Amos will fit both Model A and Model B. The file Ex15-all.amw contains this two-model setup. 237 Factor Analysis with Structured Means Results for Model B If we did not have Model A as a basis for comparison, we would now accept Model B, using any conventional significance level. Chi-square = 30.624 Degrees of freedom = 26 Probability level = 0.243 Comparing Models A and B An alternative test of Model B can be obtained by assuming that Model A is correct and testing whether Model B fits significantly worse than Model A. A chi-square test for this comparison is given in the text output. E In the Amos Output window, click Model Comparison in the tree diagram in the upper left pane. Assuming model Model A to be correct: Model Model B DF CMIN P 2 8.030 .018 NFI Delta-1 .024 IFI Delta-2 .026 RFI rho-1 .021 TLI rho2 .023 The table shows that Model B has two more degrees of freedom than Model A, and a chi-square statistic that is larger by 8.030. If Model B is correct, the probability of such a large difference in chi-square values is 0.018, providing some evidence against Model B. 238 Example 15 Modeling in VB.NET Model A The following program fits Model A. It is saved as Ex15-a.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_fem.sav") Sem.GroupName("Girls") Sem.AStructure("visperc = (int_vis) + (1) spatial + (1) err_v") Sem.AStructure("cubes = (int_cub) + (cube_s) spatial + (1) err_c") Sem.AStructure("lozenges = (int_loz) + (lozn_s) spatial + (1) err_l") Sem.AStructure("paragrap = (int_par) + (1) verbal + (1) err_p") Sem.AStructure("sentence = (int_sen) + (sent_v) verbal + (1) err_s") Sem.AStructure("wordmean = (int_wrd) + (word_v) verbal + (1) err_w") Sem.Mean("spatial", "mn_s") Sem.Mean("verbal", "mn_v") Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_mal.sav") Sem.GroupName("Boys") Sem.AStructure("visperc = (int_vis) + (1) spatial + (1) err_v") Sem.AStructure("cubes = (int_cub) + (cube_s) spatial + (1) err_c") Sem.AStructure("lozenges = (int_loz) + (lozn_s) spatial + (1) err_l") Sem.AStructure("paragrap = (int_par) + (1) verbal + (1) err_p") Sem.AStructure("sentence = (int_sen) + (sent_v) verbal + (1) err_s") Sem.AStructure("wordmean = (int_wrd) + (word_v) verbal + (1) err_w") Sem.Mean("spatial", "0") Sem.Mean("verbal", "0") Sem.FitModel() Finally Sem.Dispose() End Try End Sub The AStructure method is called once for each endogenous variable. The Mean method in the girls’ group is used to specify that the means of the verbal ability and spatial ability factors are freely estimated. The program also uses the Mean method to specify that verbal ability and spatial ability have zero means in the boys’ group. Actually, Amos assumes zero means by default, so the use of the Mean method for the boys is unnecessary. 239 Factor Analysis with Structured Means Model B The following program fits Model B. In this model, the factor means are fixed at 0 for both boys and girls. The program is saved as Ex15-b.vb. Sub Main() Dim Sem As New AmosEngine Try Dim dataFile As String = Sem.AmosDir & "Examples\userguide.xls" Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(dataFile, "grnt_fem") Sem.GroupName("Girls") Sem.AStructure("visperc = (int_vis) + (1) spatial + (1) err_v") Sem.AStructure("cubes = (int_cub) + (cube_s) spatial + (1) err_c") Sem.AStructure("lozenges = (int_loz) + (lozn_s) spatial + (1) err_l") Sem.AStructure("paragraph = (int_par) + (1) verbal + (1) err_p") Sem.AStructure("sentence = (int_sen) + (sent_v) verbal + (1) err_s") Sem.AStructure("wordmean = (int_wrd) + (word_v) verbal + (1) err_w") Sem.Mean("spatial", "0") Sem.Mean("verbal", "0") Sem.BeginGroup(dataFile, "grnt_mal") Sem.GroupName("Boys") Sem.AStructure("visperc = (int_vis) + (1) spatial + (1) err_v") Sem.AStructure("cubes = (int_cub) + (cube_s) spatial + (1) err_c") Sem.AStructure("lozenges = (int_loz) + (lozn_s) spatial + (1) err_l") Sem.AStructure("paragraph = (int_par) + (1) verbal + (1) err_p") Sem.AStructure("sentence = (int_sen) + (sent_v) verbal + (1) err_s") Sem.AStructure("wordmean = (int_wrd) + (word_v) verbal + (1) err_w") Sem.Mean("spatial", "0") Sem.Mean("verbal", "0") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 240 Example 15 Fitting Multiple Models The following program (Ex15-all.vb) fits both models A and B. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_fem.sav") Sem.GroupName("Girls") Sem.AStructure("visperc = (int_vis) + (1) spatial + (1) err_v") Sem.AStructure("cubes = (int_cub) + (cube_s) spatial + (1) err_c") Sem.AStructure("lozenges = (int_loz) + (lozn_s) spatial + (1) err_l") Sem.AStructure("paragrap = (int_par) + (1) verbal + (1) err_p") Sem.AStructure("sentence = (int_sen) + (sent_v) verbal + (1) err_s") Sem.AStructure("wordmean = (int_wrd) + (word_v) verbal + (1) err_w") Sem.Mean("spatial", "mn_s") Sem.Mean("verbal", "mn_v") Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_mal.sav") Sem.GroupName("Boys") Sem.AStructure("visperc = (int_vis) + (1) spatial + (1) err_v") Sem.AStructure("cubes = (int_cub) + (cube_s) spatial + (1) err_c") Sem.AStructure("lozenges = (int_loz) + (lozn_s) spatial + (1) err_l") Sem.AStructure("paragrap = (int_par) + (1) verbal + (1) err_p") Sem.AStructure("sentence = (int_sen) + (sent_v) verbal + (1) err_s") Sem.AStructure("wordmean = (int_wrd) + (word_v) verbal + (1) err_w") Sem.Mean("spatial", "0") Sem.Mean("verbal", "0") Sem.Model("Model A") ' Sex difference in factor means. Sem.Model("Model B", "mn_s=0", "mn_v=0") ' Equal factor means. Sem.FitAllModels() Finally Sem.Dispose() End Try End Sub Example 16 Sörbom’s Alternative to Analysis of Covariance Introduction This example demonstrates latent structural equation modeling with longitudinal observations in two or more groups, models that generalize traditional analysis of covariance techniques by incorporating latent variables and autocorrelated residuals (compare to Sörbom, 1978), and how assumptions employed in traditional analysis of covariance can be tested. Assumptions Example 9 demonstrated an alternative to conventional analysis of covariance that works even with unreliable covariates. Unfortunately, analysis of covariance also depends on other assumptions besides the assumption of perfectly reliable covariates, and the method of Example 9 also depends on those. Sörbom (1978) developed a more general approach that allows testing many of those assumptions and relaxing some of them. The present example uses the same data that Sörbom used to introduce his method. The exposition closely follows Sörbom’s. 241 242 Example 16 About the Data We will again use the Olsson (1973) data introduced in Example 9. The sample means, variances, and covariances from the 108 experimental subjects are in the Microsoft Excel worksheet Olss_exp in the workbook UserGuide.xls. The sample means, variances, and covariances from the 105 control subjects are in the worksheet Olss_cnt. Both datasets contain the customary unbiased estimates of variances and covariances. That is, the elements in the covariance matrix were obtained by dividing by ( N – 1). This also happens to be the default setting used by Amos for reading covariance matrices. However, for model fitting, the default behavior is to use the maximum likelihood estimate of the population covariance matrix (obtained by dividing by N) as the sample covariance matrix. Amos performs the conversion from unbiased estimates to maximum likelihood estimates automatically. 243 Sörbom’s Alternative to Analysis of Covariance Changing the Default Behavior E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Bias tab. The default setting used by Amos yields results that are consistent with missing data modeling (discussed in Example 17 and Example 18). Other SEM programs like LISREL (Jöreskog and Sörbom, 1989) and EQS (Bentler, 1985) analyze unbiased moments instead, resulting in slightly different results when sample sizes are small. Selecting both Unbiased options on the Bias tab causes Amos to produce the same estimates as LISREL or EQS. Appendix B discusses further the tradeoffs in choosing whether to fit the maximum likelihood estimate of the covariance matrix or the unbiased estimate. Model A Specifying the Model Consider Sörbom’s initial model (Model A) for the Olsson data. The path diagram for the control group is: 244 Example 16 0, 0, 0, eps1 1 pre_syn 1 a_opp1 pre_opp 1 eps4 1 1 a_syn1 0, eps3 eps2 a_syn2 post_syn opp_v1 a_opp2 post_opp 1 pre_verbal opp_v2 post_verbal 0, 1 0 0, zeta Example 16: Model A An alternative to ANCOVA Olsson (1973): control condition. Model Specification The following path diagram is Model A for the experimental group: 0, eps1 1 eps3 1 1 a_syn1 pre_syn 0, 0, eps2 1 a_opp1 pre_opp 1 opp_v1 pre_verbal pre_diff, 0, eps4 a_syn2 post_syn a_opp2 post_opp 1 opp_v2 post_verbal 1 effect 0, zeta Example 16: Model A An alternative to ANCOVA Olsson (1973): experimental condition. Model Specification Means and intercepts are an important part of this model, so be sure that you do the following: E From the menus, choose View > Analysis Properties. E Click the Estimation tab. E Select Estimate means and intercepts (a check mark appears next to it). In each group, Model A specifies that pre_syn and pre_opp are indicators of a single latent variable called pre_verbal, and that post_syn and post_opp are indicators of another latent variable called post_verbal. The latent variable pre_verbal is interpreted 245 Sörbom’s Alternative to Analysis of Covariance as verbal ability at the beginning of the study, and post_verbal is interpreted as verbal ability at the conclusion of the study. This is Sörbom’s measurement model. The structural model specifies that post_verbal depends linearly on pre_verbal. The labels opp_v1 and opp_v2 require the regression weights in the measurement model to be the same for both groups. Similarly, the labels a_syn1, a_opp1, a_syn2, and a_opp2 require the intercepts in the measurement model to be the same for both groups. These equality constraints are assumptions that could be wrong. In fact, one result of the upcoming analyses will be a test of these assumptions. As Sörbom points out, some assumptions have to be made about the parameters in the measurement model in order to make it possible to estimate and test hypotheses about parameters in the structural model. For the control subjects, the mean of pre_verbal and the intercept of post_verbal are fixed at 0. This establishes the control group as the reference group for the group comparison. You have to pick such a reference group to make the latent variable means and intercepts identified. For the experimental subjects, the mean and intercept parameters of the latent factors are allowed to be nonzero. The latent variable mean labeled pre_diff represents the difference in verbal ability prior to treatment, and the intercept labeled effect represents the improvement of the experimental group relative to the control group. The path diagram for this example is saved in Ex16-a.amw. Note that Sörbom’s model imposes no cross-group constraints on the variances of the six unobserved exogenous variables. That is, the four observed variables may have different unique variances in the control and experimental conditions, and the variances of pre_verbal and zeta may also be different in the two groups. We will investigate these assumptions more closely when we get to Models X, Y, and Z. Results for Model A Text Output In the Amos Output window, clicking Notes for Model in the tree diagram in the upper left pane shows that Model A cannot be accepted at any conventional significance level. Chi-square = 34.775 Degrees of freedom = 6 Probability level = 0.000 246 Example 16 We also get the following message that provides further evidence that Model A is wrong: The following variances are negative. (control - Default model) zeta -2.868 Can we modify Model A so that it will fit the data while still permitting a meaningful comparison of the experimental and control groups? It will be helpful here to repeat the analysis and request modification indices. To obtain modification indices: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Select Modification indices and enter a suitable threshold in the text box to its right. For this example, the threshold will be left at its default value of 4. Here is the modification index output from the experimental group: Modification Indices (experimental - Default model) Covariances: (experimental - Default model) M.I. eps2 <--> eps4 10.508 eps2 <--> eps3 8.980 eps1 <--> eps4 8.339 eps1 <--> eps3 7.058 Par Change 4.700 -4.021 -3.908 3.310 Variances: (experimental - Default model) M.I. Par Change Regression Weights: (experimental - Default model) M.I. Par Change Means: (experimental - Default model) M.I. Par Change Intercepts: (experimental - Default model) M.I. Par Change In the control group, no parameter had a modification index greater than the threshold of 4. 247 Sörbom’s Alternative to Analysis of Covariance Model B The largest modification index obtained with Model A suggests adding a covariance between eps2 and eps4 in the experimental group. The modification index indicates that the chi-square statistic will drop by at least 10.508 if eps2 and eps4 are allowed to have a nonzero covariance. The parameter change statistic of 4.700 indicates that the covariance estimate will be positive if it is allowed to take on any value. The suggested modification is plausible. Eps2 represents unique variation in pre_opp, and eps4 represents unique variation in post_opp, where measurements on pre_opp and post_opp are obtained by administering the same test, opposites, on two different occasions. It is therefore reasonable to think that eps2 and eps4 might be positively correlated. The next step is to consider a revised model, called Model B, in which eps2 and eps4 are allowed to be correlated in the experimental group. To obtain Model B from Model A: E Draw a double-headed arrow connecting eps2 and eps4. This allows eps2 and eps4 to be correlated in both groups. We do not want them to be correlated in the control group, so the covariance must be fixed at 0 in the control group. To accomplish this: E Click control in the Groups panel (at the left of the path diagram) to display the path diagram for the control group. E Right-click the double-headed arrow and choose Object Properties from the pop-up menu. E In the Object Properties dialog box, click the Parameters tab. E Type 0 in the Covariance text box. E Make sure the All groups check box is empty. With the check box empty, the constraint on the covariance applies to only the control group. 248 Example 16 For Model B, the path diagram for the control group is: 0 0, eps1 1 pre_opp opp_v1 pre_verbal 0, eps4 1 a_opp1 1 0, eps3 1 1 a_syn1 pre_syn 0, 0, eps2 a_syn2 post_syn a_opp2 post_opp 1 opp_v2 post_verbal 1 0 Example 16: Model B An alternative to ANCOVA Olsson (1973): control condition. Model Specification 0, zeta 249 Sörbom’s Alternative to Analysis of Covariance For the experimental group, the path diagram is: 0, eps1 1 eps3 1 a_opp1 pre_opp 1 0, eps4 1 1 a_syn1 pre_syn 0, 0, eps2 opp_v1 pre_verbal pre_diff, a_syn2 post_syn a_opp2 post_opp 1 opp_v2 post_verbal effect 1 0, zeta Example 16: Model B An alternative to ANCOVA Olsson (1973): experimental condition. Model Specification Results for Model B In moving from Model A to Model B, the chi-square statistic dropped by 17.712 (more than the promised 10.508) while the number of degrees of freedom dropped by just 1. Chi-square = 17.063 Degrees of freedom = 5 Probability level = 0.004 Model B is an improvement over Model A but not enough of an improvement. Model B still does not fit the data well. Furthermore, the variance of zeta in the control group has a negative estimate (not shown here), just as it had for Model A. These two facts argue strongly against Model B. There is room for hope, however, because the modification indices suggest further modifications of Model B. The modification indices for the control group are: 250 Example 16 Modification Indices (control - Default model) Covariances: (control - Default model) M.I. eps2 <--> eps4 4.727 eps1 <--> eps4 4.086 Par Change 2.141 -2.384 Variances: (control - Default model) M.I. Par Change Regression Weights: (control - Default model) M.I. Par Change Means: (control - Default model) M.I. Par Change Intercepts: (control - Default model) M.I. Par Change The largest modification index (4.727) suggests allowing eps2 and eps4 to be correlated in the control group. (Eps2 and eps4 are already correlated in the experimental group.) Making this modification leads to Model C. Model C Model C is just like Model B except that the terms eps2 and eps4 are correlated in both the control group and the experimental group. To specify Model C, just take Model B and remove the constraint on the covariance between eps2 and eps4 in the control group. Here is the new path diagram for the control group, as found in file Ex16-c.amw: 0, eps2 1 pre_opp opp_v1 pre_verbal 0, eps4 1 a_opp1 1 0, eps3 1 1 a_syn1 pre_syn 0, 0, eps1 a_syn2 post_syn a_opp2 post_opp 1 opp_v2 post_verbal 1 0 Example 16: Model C An alternative to ANCOVA Olsson (1973): control condition. Model Specification 0, zeta 251 Sörbom’s Alternative to Analysis of Covariance Results for Model C Finally, we have a model that fits. Chi-square = 2.797 Degrees of freedom = 4 Probability level = 0.592 From the point of view of statistical goodness of fit, there is no reason to reject Model C. It is also worth noting that all the variance estimates are positive. The following are the parameter estimates for the 105 control subjects: 6.22 0, 10.04 eps1 0, 5.63 0, 12.12 eps3 eps2 1 1 1 18.63 0, 12.36 eps4 1 19.91 20.38 21.21 pre_syn pre_opp post_syn post_opp 1.00 .88 1.00 .90 pre_verbal 0, 28.10 .95 post_verbal 1 0 0, .54 zeta Example 16: Model C An alternative to ANCOVA Olsson (1973): control condition. Unstandardized estimates Next is a path diagram displaying parameter estimates for the 108 experimental subjects: 252 Example 16 7.34 0, 2.19 eps1 0, 7.51 0, 12.39 eps3 eps2 1 1 1 18.63 0, 17.07 eps4 1 19.91 20.38 21.21 pre_syn pre_opp post_syn post_opp 1.00 .88 1.00 .90 pre_verbal 1.87, 47.46 .85 post_verbal 1 3.71 0, 8.86 zeta Example 16: Model C An alternative to ANCOVA Olsson (1973): experimental condition. Unstandardized estimates Most of these parameter estimates are not very interesting, although you may want to check and make sure that the estimates are reasonable. We have already noted that the variance estimates are positive. The path coefficients in the measurement model are positive, which is reassuring. A mixture of positive and negative regression weights in the measurement model would have been difficult to interpret and would have cast doubt on the model. The covariance between eps2 and eps4 is positive in both groups, as expected. We are primarily interested in the regression of post_verbal on pre_verbal. The intercept, which is fixed at 0 in the control group, is estimated to be 3.71 in the experimental group. The regression weight is estimated at 0.95 in the control group and 0.85 in the experimental group. The regression weights for the two groups are close enough that they might even be identical in the two populations. Identical regression weights would allow a greatly simplified evaluation of the treatment by limiting the comparison of the two groups to a comparison of their intercepts. It is therefore worthwhile to try a model in which the regression weights are the same for both groups. This will be Model D. Model D Model D is just like Model C except that it requires the regression weight for predicting post_verbal from pre_verbal to be the same for both groups. This constraint can be imposed by giving the regression weight the same name, for example pre2post, in both groups. The following is the path diagram for Model D for the experimental group: 253 Sörbom’s Alternative to Analysis of Covariance 0, eps1 0, 0, 1 pre_syn 1 a_opp1 a_syn2 pre_opp 1 eps4 1 1 a_syn1 0, eps3 eps2 post_syn opp_v1 1 pre2post pre_verbal a_opp2 post_opp opp_v2 post_verbal 1 pre_diff, effect 0, zeta Example 16: Model D An alternative to ANCOVA Olsson (1973): experimental condition. Model Specification Next is the path diagram for Model D for the control group: 0, eps1 0, 0, eps3 eps2 1 1 1 a_syn1 pre_syn 1 a_opp1 pre_opp 1 0, eps4 a_syn2 post_syn opp_v1 pre_verbal a_opp2 post_opp 1 pre2post 0, opp_v2 post_verbal 1 0 0, zeta Example 16: Model D An alternative to ANCOVA Olsson (1973): control condition. Model Specification Results for Model D Model D would be accepted at conventional significance levels. Chi-square = 3.976 Degrees of freedom = 5 Probability level = 0.553 254 Example 16 Testing Model D against Model C gives a chi-square value of 1.179 (= 3.976 – 2.797) with 1 (that is, 5 – 4) degree of freedom. Again, you would accept the hypothesis of equal regression weights (Model D). With equal regression weights, the comparison of treated and untreated subjects now turns on the difference between their intercepts. Here are the parameter estimates for the 105 control subjects: 6.33 0, 9.49 0, 5.78 0, 11.92 eps1 1 0, 12.38 eps3 eps2 eps4 1 1 18.62 1 19.91 20.38 21.20 pre_syn pre_opp post_syn post_opp 1.00 .88 1.00 .91 .90 pre_verbal post_verbal 1 0, 29.51 0 0, 1.02 zeta Example 16: Model D An alternative to ANCOVA Olsson (1973): control condition. Unstandardized estimates The estimates for the 108 experimental subjects are: 7.24 0, 2.52 eps1 0, 7.38 0, 12.25 eps3 eps2 1 1 1 18.62 0, 17.05 eps4 1 19.91 20.38 21.20 pre_syn pre_opp post_syn post_opp 1.00 .88 1.00 .91 pre_verbal 1.88, 46.90 .90 post_verbal 1 3.63 0, 8.74 zeta Example 16: Model D An alternative to ANCOVA Olsson (1973): experimental condition. Unstandardized estimates The intercept for the experimental group is estimated as 3.63. According to the text output (not shown here), the estimate of 3.63 has a critical ratio of 7.59. Thus, the 255 Sörbom’s Alternative to Analysis of Covariance intercept for the experimental group is significantly different from the intercept for the control group (which is fixed at 0). Model E Another way of testing the difference in post_verbal intercepts for significance is to repeat the Model D analysis with the additional constraint that the intercept be equal across groups. Since the intercept for the control group is already fixed at 0, we need add only the requirement that the intercept be 0 in the experimental group as well. This restriction is used in Model E. The path diagrams for Model E are just like that for Model D, except that the intercept in the regression of post_verbal on pre_verbal is fixed at 0 in both groups. The path diagrams are not reproduced here. They can be found in Ex16-e.amw. Results for Model E Model E has to be rejected. Chi-square = 55.094 Degrees of freedom = 6 Probability level = 0.000 Comparing Model E against Model D yields a chi-square value of 51.018 (= 55.094 – 3.976) with 1 (= 6 – 5) degree of freedom. Model E has to be rejected in favor of Model D. Because the fit of Model E is significantly worse than that of Model D, the hypothesis of equal intercepts again has to be rejected. In other words, the control and experimental groups differ at the time of the posttest in a way that cannot be accounted for by differences that existed at the time of the pretest. This concludes Sörbom’s (1978) analysis of the Olsson data. Fitting Models A Through E in a Single Analysis The example file Ex16-a2e.amw fits all five models (A through E) in a single analysis. The procedure for fitting multiple models in a single analysis was shown in detail in Example 6. 256 Example 16 Comparison of Sörbom’s Method with the Method of Example 9 Sörbom’s alternative to analysis of covariance is more difficult to apply than the method of Example 9. On the other hand, Sörbom’s method is superior to the method of Example 9 because it is more general. That is, you can duplicate the method of Example 9 by using Sörbom’s method with suitable parameter constraints. We end this example with three additional models called X, Y, and Z. Comparisons among these new models will allow us to duplicate the results of Example 9. However, we will also find evidence that the method used in Example 9 was inappropriate. The purpose of this fairly complicated exercise is to call attention to the limitations of the approach in Example 9 and to show that some of the assumptions of that method can be tested and relaxed in Sörbom’s approach. Model X First, consider a new model (Model X) that requires that the variances and covariances of the observed variables be the same for the control and experimental conditions. The means of the observed variables may differ between the two populations. Model X does not specify any linear dependencies among the variables. Model X is not, by itself, very interesting; however, Models Y and Z (coming up) are interesting, and we will want to know how well they fit the data, compared to Model X. Modeling in Amos Graphics Because there are no intercepts or means to estimate, make sure that there is not a check mark next to Estimate means and intercepts on the Estimation tab of the Analysis Properties dialog box. 257 Sörbom’s Alternative to Analysis of Covariance The following is the path diagram for Model X for the control group: c_s1o1 v_s1 pre_syn c_ c_s1s2 v_o1 pre_opp s1 o 2 o1 s2 c_ v_s2 c_o1o2 v_o2 post_syn post_opp c_s2o2 Example 16: Model X Group-invariant covariance structure Olsson (1973): control condition Model Specification The path diagram for the experimental group is identical. Using the same parameter names for both groups has the effect of requiring the two groups to have the same parameter values. Results for Model X Model X would be rejected at any conventional level of significance. Chi-square = 29.145 Degrees of freedom = 10 Probability level = 0.001 The analyses that follow (Models Y and Z) are actually inappropriate now that we are satisfied that Model X is inappropriate. We will carry out the analyses as an exercise in order to demonstrate that they yield the same results as obtained in Example 9. Model Y Consider a model that is just like Model D but with these additional constraints: Verbal ability at the pretest (pre_verbal) has the same variance in the control and experimental groups. The variances of eps1, eps2, eps3, eps4, and zeta are the same for both groups. The covariance between eps2 and eps4 is the same for both groups. 258 Example 16 Apart from the correlation between eps2 and eps4, Model D required that eps1, eps2, eps3, eps4, and zeta be uncorrelated among themselves and with every other exogenous variable. These new constraints amount to requiring that the variances and covariances of all exogenous variables be the same for both groups. Altogether, the new model imposes two kinds of constraints: All regression weights and intercepts are the same for both groups, except possibly for the intercept used in predicting post_verbal from pre_verbal (Model D requirements). The variances and covariances of the exogenous variables are the same for both groups (additional Model Y requirements). These are the same assumptions we made in Model B of Example 9. The difference this time is that the assumptions are made explicit and can be tested. Path diagrams for Model Y are shown below. Means and intercepts are estimated in this model, so be sure that you: E From the menus, choose View > Analysis Properties. E Click the Estimation tab. E Select Estimate means and intercepts (a check mark appears next to it). Here is the path diagram for the experimental group: c_e2e4 0, v_e1 eps1 0, v_e3 0, v_e2 eps3 eps2 1 1 1 a_syn1 pre_syn pre_opp a_syn2 post_syn opp_v1 pre_verbal re_diff, v_v1 1 a_opp1 1 0, v_e4 eps4 a_opp2 post_opp 1 pre2post opp_v2 post_verbal 1 effect 0, v_z zeta Example 16: Model Y An alternative to ANCOVA Olsson (1973): experimental condition. Model Specification 259 Sörbom’s Alternative to Analysis of Covariance Here is the path diagram for the control group: c_e2e4 0, v_e1 eps1 0, v_e3 0, v_e2 eps3 eps2 1 1 1 a_syn1 pre_syn 1 a_opp1 pre_opp 1 0, v_e4 eps4 a_syn2 post_syn opp_v1 pre_verbal a_opp2 post_opp 1 pre2post 0, v_v1 opp_v2 post_verbal 1 0 0, v_z zeta Example 16: Model Y An alternative to ANCOVA Olsson (1973): control condition. Model Specification Results for Model Y We must reject Model Y. Chi-square = 31.816 Degrees of freedom = 12 Probability level = 0.001 This is a good reason for being dissatisfied with the analysis of Example 9, since it depended upon Model Y (which, in Example 9, was called Model B) being correct. If you look back at Example 9, you will see that we accepted Model B there (χ2= 2.684, df = 2, p = 0.261). So how can we say that the same model has to be rejected here (χ2 = 31.816, df = 1, p = 0.001)? The answer is that, while the null hypothesis is the same in both cases (Model B in Example 9 and Model Y in the present example), the alternative hypotheses are different. In Example 9, the alternative against which Model B is tested includes the assumption that the variances and covariances of the observed variables are the same for both values of the treatment variable (also stated in the assumptions on p. 35). In other words, the test of Model B carried out in Example 9 implicitly assumed homogeneity of variances and covariances for the control and experimental populations. This is the very assumption that is made explicit in Model X of the present example. Model Y is a restricted version of Model X. It can be shown that the assumptions of Model Y (equal regression weights for the two populations, and equal variances and 260 Example 16 covariances of the exogenous variables) imply the assumptions of Model X (equal covariances for the observed variables). Models X and Y are therefore nested models, and it is possible to carry out a conditional test of Model Y under the assumption that Model X is true. Of course, it will make sense to do that test only if Model X really is true, and we have already concluded it is not. Nevertheless, let’s go through the motions of testing Model Y against Model X. The difference in chi-square values is 2.671 (that is, 31.816 – 29.145) with 2 (= 12 – 10) degrees of freedom. These figures are identical (within rounding error) to those of Example 9, Model B. The difference is that in Example 9 we assumed that the test was appropriate. Now we are quite sure (because we rejected Model X) that it is not. If you have any doubts that the current Model Y is the same as Model B of Example 9, you should compare the parameter estimates from the two analyses. Here are the Model Y parameter estimates for the 108 experimental subjects. See if you can match up these estimates displayed with the unstandardized parameter estimates obtained in Model B of Example 9. 6.83 0, 6.04 eps1 0, 6.58 0, 12.31 eps3 eps2 1 1 1 18.53 0, 14.75 eps4 1 19.90 20.38 21.20 pre_syn pre_opp post_syn post_opp 1.00 .88 1.00 .91 pre_verbal 1.88, 37.79 .89 post_verbal 1 3.64 0, 4.85 zeta Example 16: Model Y An alternative to ANCOVA Olsson (1973): experimental condition. Unstandardized estimates Model Z Finally, construct a new model (Model Z) by starting with Model Y and adding the requirement that the intercept in the equation for predicting post_verbal from pre_verbal be the same in both populations. This model is equivalent to Model C of Example 9. The path diagrams for Model Z are as follows: 261 Sörbom’s Alternative to Analysis of Covariance Here is the path diagram for Model Z for the experimental group: c_e2e4 0, v_e1 eps1 0, v_e3 0, v_e2 eps3 eps2 1 1 1 a_syn1 pre_syn 1 a_opp1 a_syn2 pre_opp 1 0, v_e4 eps4 post_syn opp_v1 1 pre2post pre_verbal a_opp2 post_opp opp_v2 post_verbal 1 pre_diff, v_v1 0 0, v_z zeta Example 16: Model Z An alternative to ANCOVA Olsson (1973): experimental condition. Model Specification Here is the path diagram for the control group: c_e2e4 0, v_e1 eps1 0, v_e3 0, v_e2 eps3 eps2 1 1 1 a_syn1 pre_syn 1 a_opp1 pre_opp 1 a_syn2 post_syn opp_v1 pre_verbal 0, v_e4 eps4 a_opp2 post_opp 1 pre2post 0, v_v1 opp_v2 post_verbal 1 0 Example 16: Model Z An alternative to ANCOVA Olsson (1973): control condition. Model Specification Results for Model Z This model has to be rejected. Chi-square = 84.280 Degrees of freedom = 13 Probability level = 0.000 0, v_z zeta 262 Example 16 Model Z also has to be rejected when compared to Model Y (χ2 = 84.280 – 31.816 = 52.464, df = 13 – 12 = 1). Within rounding error, this is the same difference in chi-square values and degrees of freedom as in Example 9, when Model C was compared to Model B. Modeling in VB.NET Model A The following program fits Model A. It is saved as Ex16-a.vb. Sub Main() Dim Sem As New AmosEngine Try Dim dataFile As String = Sem.AmosDir & "Examples\UserGuide.xls" Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(dataFile, "Olss_cnt") Sem.GroupName("control") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (0) + () pre_verbal + (1) zeta") Sem.BeginGroup(dataFile, "Olss_exp") Sem.GroupName("experimental") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (effect) + () pre_verbal + (1) zeta") Sem.Mean("pre_verbal", "pre_diff") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 263 Sörbom’s Alternative to Analysis of Covariance Model B To fit Model B, start with the program for Model A and add the line Sem.AStructure("eps2 <---> eps4") to the model specification for the experimental group. Here is the resulting program for Model B. It is saved as Ex16-b.vb. Sub Main() Dim Sem As New AmosEngine Try Dim dataFile As String = Sem.AmosDir & "Examples\UserGuide.xls" Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(dataFile, "Olss_cnt") Sem.GroupName("control") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (0) + () pre_verbal + (1) zeta") Sem.BeginGroup(dataFile, "Olss_exp") Sem.GroupName("experimental") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (effect) + () pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.Mean("pre_verbal", "pre_diff") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 264 Example 16 Model C The following program fits Model C. The program is saved as Ex16-c.vb. Sub Main() Dim Sem As New AmosEngine Try Dim dataFile As String = Sem.AmosDir & "Examples\UserGuide.xls" Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(dataFile, "Olss_cnt") Sem.GroupName("control") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (0) + () pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.BeginGroup(dataFile, "Olss_exp") Sem.GroupName("experimental") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (effect) + () pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.Mean("pre_verbal", "pre_diff") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 265 Sörbom’s Alternative to Analysis of Covariance Model D The following program fits Model D. The program is saved as Ex16-d.vb. Sub Main() Dim Sem As New AmosEngine Try Dim dataFile As String = Sem.AmosDir & "Examples\UserGuide.xls" Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(dataFile, "Olss_cnt") Sem.GroupName("control") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (0) + (pre2post) pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.BeginGroup(dataFile, "Olss_exp") Sem.GroupName("experimental") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure( _ "post_verbal = (effect) + (pre2post) pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.Mean("pre_verbal", "pre_diff") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 266 Example 16 Model E The following program fits Model E. The program is saved as Ex16-e.vb. Sub Main() Dim Sem As New AmosEngine Try Dim dataFile As String = Sem.AmosDir & "Examples\UserGuide.xls" Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(dataFile, "Olss_cnt") Sem.GroupName("control") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (0) + (pre2post) pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.BeginGroup(dataFile, "Olss_exp") Sem.GroupName("experimental") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (0) + (pre2post) pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4") Sem.Mean("pre_verbal", "pre_diff") Sem.FitModel() Finally Sem.Dispose() End Try End Sub 267 Sörbom’s Alternative to Analysis of Covariance Fitting Multiple Models The following program fits all five models, A through E. The program is saved as Ex16-a2e.vb. Sub Main() Dim Sem As New AmosEngine Try Dim dataFile As String = Sem.AmosDir & "Examples\UserGuide.xls" Sem.TextOutput() Sem.Mods(4) Sem.Standardized() Sem.Smc() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(dataFile, "Olss_cnt") Sem.GroupName("control") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (0) + (c_beta) pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4 (c_e2e4)") Sem.BeginGroup(dataFile, "Olss_exp") Sem.GroupName("experimental") Sem.AStructure("pre_syn = (a_syn1) + (1) pre_verbal + (1) eps1") Sem.AStructure( _ "pre_opp = (a_opp1) + (opp_v1) pre_verbal + (1) eps2") Sem.AStructure("post_syn = (a_syn2) + (1) post_verbal + (1) eps3") Sem.AStructure( _ "post_opp = (a_opp2) + (opp_v2) post_verbal + (1) eps4") Sem.AStructure("post_verbal = (effect) + (e_beta) pre_verbal + (1) zeta") Sem.AStructure("eps2 <---> eps4 (e_e2e4)") Sem.Mean("pre_verbal", "pre_diff") Sem.Model("Model A", "c_e2e4 = 0", "e_e2e4 = 0") Sem.Model("Model B", "c_e2e4 = 0") Sem.Model("Model C") Sem.Model("Model D", "c_beta = e_beta") Sem.Model("Model E", "c_beta = e_beta", "effect = 0") Sem.FitAllModels() Finally Sem.Dispose() End Try End Sub 268 Example 16 Models X, Y, and Z VB.NET programs for Models X, Y, and Z will not be discussed here. The programs can be found in the files Ex16-x.vb, Ex16-y.vb, and Ex16-z.vb. Example 17 Missing Data Introduction This example demonstrates the analysis of a dataset in which some values are missing. Incomplete Data It often happens that data values that were anticipated in the design of a study fail to materialize. Perhaps a subject failed to participate in part of a study. Or maybe a person filling out a questionnaire skipped a couple of questions. You may find that some people did not tell you their age, some did not report their income, others did not show up on the day you measured reaction times, and so on. For one reason or another, you often end up with a set of data that has gaps in it. One standard method for dealing with incomplete data is to eliminate from the analysis any observation for which some data value is missing. This is sometimes called listwise deletion. For example, if a person fails to report his income, you would eliminate that person from your study and proceed with a conventional analysis based on complete data but with a reduced sample size. This method is unsatisfactory inasmuch as it requires discarding the information contained in the responses that the person did give because of the responses that he did not give. If missing values are common, this method may require discarding the bulk of a sample. Another standard approach, in analyses that depend on sample moments, is to calculate each sample moment separately, excluding an observation from the calculation only when it is missing a value that is needed for the computation of that particular moment. For example, in calculating the sample mean income, you would 269 270 Example 17 exclude only persons whose incomes you do not know. Similarly, in computing the sample covariance between age and income, you would exclude an observation only if age is missing or if income is missing. This approach to missing data is sometimes called pairwise deletion. A third approach is data imputation, replacing the missing values with some kind of guess, and then proceeding with a conventional analysis appropriate for complete data. For example, you might compute the mean income of the persons who reported their income, and then attribute that income to all persons who did not report their income. Beale and Little (1975) discuss methods for data imputation, which are implemented in many statistical packages. Amos does not use any of these methods. Even in the presence of missing data, it computes maximum likelihood estimates (Anderson, 1957). For this reason, whenever you have missing data, you may prefer to use Amos to do a conventional analysis, such as a simple regression analysis (as in Example 4) or to estimate means (as in Example 13). It should be mentioned that there is one kind of missing data that Amos cannot deal with. (Neither can any other general approach to missing data, such as the three mentioned above.) Sometimes the very fact that a value is missing conveys information. It could be, for example, that people with very high incomes tend (more than others) not to answer questions about income. Failure to respond may thus convey probabilistic information about a person’s income level, beyond the information already given in the observed data. If this is the case, the approach to missing data that Amos uses is inapplicable. Amos assumes that data values that are missing are missing at random. It is not always easy to know whether this assumption is valid or what it means in practice (Rubin, 1976). On the other hand, if the missing at random condition is satisfied, Amos provides estimates that are efficient and consistent. By contrast, the methods mentioned previously do not provide efficient estimates, and provide consistent estimates only under the stronger condition that missing data are missing completely at random (Little and Rubin, 1989). About the Data For this example, we have modified the Holzinger and Swineford (1939) data used in Example 8. The original dataset (in the SPSS Statistics file Grnt_fem.sav) contains the scores of 73 girls on six tests, for a total of 438 data values. To obtain a dataset with missing values, each of the 438 data values in Grnt_fem.sav was deleted with probability 0.30. 271 Missing Data The resulting dataset is in the SPSS Statistics file Grant_x.sav. Below are the first few cases in that file. A period (.) represents a missing value. Amos recognizes the periods in SPSS Statistics datasets and treats them as missing data. Amos recognizes missing data in many other data formats as well. For instance, in an ASCII dataset, two consecutive delimiters indicate a missing value. The seven cases shown above would look like this in ASCII format: visperc,cubes,lozenges,paragraph,sentence,wordmean 33,,17,8,17,10 30,,20,,,18 ,33,36,,25,41 28,,,10,18,11 ,,25,,11,,8 20,25,6,9,,,, 17,21,6,5,10,10 Approximately 27% of the data in Grant_x.sav are missing. Complete data are available for only seven cases. Specifying the Model We will now fit the common factor analysis model of Example 8 (shown on p. 272) to the Holzinger and Swineford data in the file Grant_x.sav. The difference between this analysis and the one in Example 8 is that this time 27% of the data are missing. 272 Example 17 1 spatial visperc cubes lozenges 1 verbal paragraph sentence wordmean 1 1 1 1 1 1 err_v err_c err_l err_p err_s err_w Example 17, Model A Factor analysis with missing data Holzinger and Swineford (1939): Girls' sample Model Specification After specifying the data file to be Grant_x.sav and drawing the above path diagram: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Estimation tab. E Select Estimate means and intercepts (a check mark appears next to it). This will give you an estimate of the intercept in each of the six regression equations for predicting the measured variables. Maximum likelihood estimation with missing values works only when you estimate means and intercepts, so you have to estimate them even if you are not interested in the estimates. Saturated and Independence Models Computing some fit measures requires fitting the saturated and independence models in addition to your model. This is never a problem with complete data, but fitting these models can require extensive computation when there are missing values. The saturated model is especially problematic. With p observed variables, the saturated model has p × ( p + 3 ) ⁄ 2 parameters. For example, with 10 observed variables, there are 65 parameters; with 20 variables, there are 230 parameters; with 40 variables, there are 860 parameters; and so on. It may be impractical to fit the saturated model because of the 273 Missing Data large number of parameters. In addition, some missing data value patterns can make it impossible in principle to fit the saturated model even if it is possible to fit your model. With incomplete data, Amos Graphics tries to fit the saturated and independence models in addition to your model. If Amos fails to fit the independence model, then fit measures that depend on the fit of the independence model, such as CFI, cannot be computed. If Amos cannot fit the saturated model, the usual chi-square statistic cannot be computed. Results of the Analysis Text Output For this example, Amos succeeds in fitting both the saturated and the independence model. Consequently, all fit measures, including the chi-square statistic, are reported. To see the fit measures: E Click Model Fit in the tree diagram in the upper left corner of the Amos Output window. The following is the portion of the output that shows the chi-square statistic for the factor analysis model (called Default model), the saturated model, and the independence model: CMIN Model Default model Saturated model Independence model NPAR 19 27 6 CMIN 11.547 .000 117.707 DF 8 0 21 P .173 CMIN/DF 1.443 .000 5.605 The chi-square value of 11.547 is not very different from the value of 7.853 obtained in Example 8 with the complete dataset. In both analyses, the p values are above 0.05. Parameter estimates, standard errors, and critical ratios have the same interpretation as in an analysis of complete data. 274 Example 17 Regression Weights: (Group number 1 - Default model) Estimate S.E. C.R. 1.000 .511 .153 3.347 1.047 .316 3.317 1.000 1.259 .194 6.505 2.140 .326 6.572 visperc <--- spatial cubes <--- spatial lozenges <--- spatial paragrap <--- verbal sentence <--- verbal wordmean <--- verbal P Label *** *** *** *** Intercepts: (Group number 1 - Default model) Estimate S.E. 28.885 .913 24.998 .536 15.153 1.133 18.097 1.055 10.987 .468 18.864 .636 visperc cubes lozenges wordmean paragrap sentence C.R. 31.632 46.603 13.372 17.146 23.495 29.646 P *** *** *** *** *** *** Label Covariances: (Group number 1 - Default model) verbal <--> spatial Estimate S.E. C.R. P 7.993 3.211 2.490 .013 Label Variances: (Group number 1 - Default model) spatial verbal err_v err_c err_l err_p err_s err_w Estimate S.E. C.R. 29.563 11.600 2.549 10.814 2.743 3.943 18.776 8.518 2.204 8.034 2.669 3.011 36.625 11.662 3.141 2.825 1.277 2.212 7.875 2.403 3.277 22.677 6.883 3.295 P .011 *** .028 .003 .002 .027 .001 *** Label Standardized estimates and squared multiple correlations are as follows: Standardized Regression Weights: (Group number 1 Default model) visperc <--cubes <--lozenges <--paragrap <--sentence <--wordmean <--- spatial spatial spatial verbal verbal verbal Estimate .782 .700 .685 .890 .828 .828 Correlations: (Group number 1 - Default model) verbal <--> spatial Estimate .447 Squared Multiple Correlations: (Group number 1 Default model) wordmean sentence paragrap lozenges cubes visperc Estimate .686 .685 .793 .469 .490 .612 275 Missing Data Graphics Output Here is the path diagram showing the standardized estimates and the squared multiple correlations for the endogenous variables: Chi square = 11.547 df = 8 p = .173 .61 .78 visperc err_v .49 spatial .70 cubes err_c .47 .69 .45 lozenges err_l .79 .89 paragraph err_p .69 verbal .83 sentence err_s .69 .83 wordmean err_w Example 17 Factor analysis with missing data Holzinger and Swineford (1939): Girls' sample Standardized estimates The standardized parameter estimates may be compared to those obtained from the complete data in Example 8. The two sets of estimates are identical in the first decimal place. Modeling in VB.NET When you write an Amos program to analyze incomplete data, Amos does not automatically fit the independence and saturated models. (Amos Graphics does fit those models automatically.) If you want your Amos program to fit the independence and saturated models, your program has to include code to specify those models. In particular, in order for your program to compute the usual likelihood ratio chi-square statistic, your program must include code to fit the saturated model. 276 Example 17 This section outlines three steps necessary for computing the likelihood ratio chisquare statistic: Fitting the factor model Fitting the saturated model Computing the likelihood ratio chi-square statistic and its p value First, the three steps are performed by three separate programs. After that, the three steps will be combined into a single program. Fitting the Factor Model (Model A) The following program fits the confirmatory factor model (Model A). It is saved as Ex17-a.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.Title("Example 17 a: Factor Model") Sem.TextOutput() Sem.Standardized() Sem.Smc() Sem.AllImpliedMoments() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(Sem.AmosDir & "Examples\Grant_x.sav") Sem.AStructure("visperc = ( ) + (1) spatial + (1) err_v") Sem.AStructure("cubes = ( ) + spatial + (1) err_c") Sem.AStructure("lozenges = ( ) + spatial + (1) err_l") Sem.AStructure("paragrap = ( ) + (1) verbal + (1) err_p") Sem.AStructure("sentence = ( ) + verbal + (1) err_s") Sem.AStructure("wordmean = ( ) + verbal + (1) err_w") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Notice that the ModelMeansAndIntercepts method is used to specify that means and intercepts are parameters of the model, and that each of the six regression equations contains a set of empty parentheses representing an intercept. When you analyze data with missing values, means and intercepts must appear in the model as explicit parameters. This is different from the analysis of complete data, where means and 277 Missing Data intercepts do not have to appear in the model unless you want to estimate them or constrain them. The fit of Model A is summarized as follows: Function of log likelihood = 1375.133 Number of parameters = 19 The Function of log likelihood value is displayed instead of the chi-square fit statistic that you get with complete data. In addition, at the beginning of the Summary of models section of the text output, Amos displays the warning: The saturated model was not fitted to the data of at least one group. For this reason, only the 'function of log likelihood', AIC and BCC are reported. The likelihood ratio chi-square statistic and other fit measures are not reported. Whenever Amos prints this note, the values in the cmin column of the Summary of models section do not contain the familiar fit chi-square statistics. To evaluate the fit of the factor model, its Function of log likelihood value has to be compared to that of some less constrained baseline model, such as the saturated model. Fitting the Saturated Model (Model B) The saturated model has as many free parameters as there are first and second order moments. When complete data are analyzed, the saturated model always fits the sample data perfectly (with chi-square = 0.00 and df = 0). All structural equation models with the same six observed variables are either equivalent to the saturated model or are constrained versions of it. A saturated model will fit the sample data at least as well as any constrained model, and its Function of log likelihood value will be no larger and is, typically, smaller. 278 Example 17 The following program fits the saturated model (Model B). The program is saved as Ex17-b.vb. Sub Main() Dim Saturated As New AmosEngine Try 'Set up and estimate Saturated model: Saturated.Title("Example 17 b: Saturated Model") Saturated.TextOutput() Saturated.AllImpliedMoments() Saturated.ModelMeansAndIntercepts() Saturated.BeginGroup(Saturated.AmosDir & "Examples\Grant_x.sav") Saturated.Mean("visperc") Saturated.Mean("cubes") Saturated.Mean("lozenges") Saturated.Mean("paragrap") Saturated.Mean("sentence") Saturated.Mean("wordmean") Saturated.FitModel() Finally Saturated.Dispose() End Try End Sub Following the BeginGroup line, there are six uses of the Mean method, requesting estimates of means for the six variables. When Amos estimates their means, it will automatically estimate their variances and covariances as well, as long as the program does not explicitly constrain the variances and covariances. 279 Missing Data The following are the unstandardized parameter estimates for the saturated Model B: Means: (Group number 1 - Model 1) Estimate S.E. C.R. .910 31.756 visperc 28.883 .540 46.592 cubes 25.154 lozenges 14.962 1.101 13.591 .466 23.572 paragrap 10.976 .632 29.730 sentence 18.802 wordmean 18.263 1.061 17.211 P *** *** *** *** *** *** Label Covariances: (Group number 1 - Model 1) Estimate S.E. C.R. 17.484 4.614 3.789 visperc <--> cubes visperc <--> lozenges 31.173 9.232 3.377 cubes <--> lozenges 17.036 5.459 3.121 8.453 3.705 2.281 visperc <--> paragrap 2.739 2.179 1.257 cubes <--> paragrap 9.287 4.596 2.021 lozenges <--> paragrap visperc <--> sentence 14.382 5.114 2.813 1.678 2.929 .573 cubes <--> sentence lozenges <--> sentence 10.544 6.050 1.743 paragrap <--> sentence 13.470 2.945 4.574 visperc <--> wordmean 14.665 8.314 1.764 .713 cubes <--> wordmean 3.470 4.870 lozenges <--> wordmean 29.655 10.574 2.804 paragrap <--> wordmean 23.616 5.010 4.714 sentence <--> wordmean 29.577 6.650 4.447 Variances: (Group number 1 - Model 1) Estimate S.E. C.R. P Label visperc 49.584 9.398 5.276 *** cubes 16.484 3.228 5.106 *** lozenges 67.901 13.404 5.066 *** paragrap 13.570 2.515 5.396 *** sentence 25.007 4.629 5.402 *** wordmean 73.974 13.221 5.595 *** P *** *** .002 .023 .209 .043 .005 .567 .081 *** .078 .476 .005 *** *** Label 280 Example 17 The AllImpliedMoments method in the program displays the following table of estimates: Implied (for all variables) Covariances (Group number 1 - Model 1) wordmean sentence paragrap lozenges cubes wordmean 73.974 sentence 29.577 25.007 paragrap 23.616 13.470 13.570 lozenges 29.655 10.544 9.287 67.901 cubes 3.470 1.678 2.739 17.036 16.484 visperc 14.665 14.382 8.453 31.173 17.484 Implied (for all variables) Means (Group number 1 - Model 1) wordmean sentence paragrap lozenges cubes 18.263 18.802 10.976 14.962 25.154 visperc 49.584 visperc 28.883 These estimates, even the estimated means, are different from the sample values computed using either pairwise or listwise deletion methods. For example, 53 people took the visual perception test (visperc). The sample mean of those 53 visperc scores is 28.245. One might expect the Amos estimate of the mean visual perception score to be 28.245. In fact it is 28.883. Amos displays the following fit information for Model B: Function of log likelihood = 1363.586 Number of parameters = 27 Function of log likelihood values can be used to compare the fit of nested models. In this case, Model A (with a fit statistic of 1375.133 and 19 parameters) is nested within Model B (with a fit statistic of 1363.586 and 27 parameters). When a stronger model (Model A) is being compared to a weaker model (Model B), and where the stronger model is correct, you can say the following: The amount by which the Function of log likelihood increases when you switch from the weaker model to the stronger model is an observation on a chi-square random variable with degrees of freedom equal to the difference in the number of parameters of the two models. In the present example, the Function of log likelihood for Model A exceeds that for Model B by 11.547 (= 1375.133 – 1363.586). At the same time, Model A requires estimating only 19 parameters while Model B requires estimating 27 parameters, for a difference of 8. In other words, if Model A is correct, 11.547 is an observation on a chi-square variable with 8 degrees of freedom. A chi-square table can be consulted to see whether this chisquare statistic is significant. 281 Missing Data Computing the Likelihood Ratio Chi-Square Statistic and P Instead of consulting a chi-square table, you can use the ChiSquareProbability method to find the probability that a chi-square value as large as 11.547 would have occurred with a correct factor model. The following program shows how the ChiSquareProbability method is used. The program is saved as Ex17-c.vb. Sub Main() Dim ChiSquare As Double, P As Double Dim Df As Integer ChiSquare = 1375.133 - 1363.586 'Difference in functions of log-likelihood Df = 27 - 19 'Difference in no. of parameters P = AmosEngine.ChiSquareProbability(ChiSquare, CDbl(Df)) Debug.WriteLine( "Fit of factor model:") Debug.WriteLine( "Chi Square = " & ChiSquare.ToString("#,##0.000")) Debug.WriteLine("DF = " & Df) Debug.WriteLine("P = " & P.ToString("0.000")) End Sub The program output is displayed in the Debug output panel of the program editor. 282 Example 17 The p value is 0.173; therefore, we accept the hypothesis that Model A is correct at the 0.05 level. As the present example illustrates, in order to test a model with incomplete data, you have to compare its fit to that of another, alternative model. In this example, we wanted to test Model A, and it was necessary also to fit Model B as a standard against which Model A could be compared. The alternative model has to meet two requirements. First, you have to be satisfied that it is correct. Model B certainly meets this criterion, since it places no constraints on the implied moments, and cannot be wrong. Second, it must be more general than the model you wish to test. Any model that can be obtained by removing some of the constraints on the parameters of the model under test will meet this second criterion. If you have trouble thinking up an alternative model, you can always use the saturated model, as was done here. Performing All Steps with One Program It is possible to write a single program that fits both models (the factor model and the saturated model) and then calculates the chi-square statistic and its p value. The program in Ex17-all.vb shows how this can be done. Example 18 More about Missing Data Introduction This example demonstrates the analysis of data in which some values are missing by design and then explores the benefits of intentionally collecting incomplete data. Missing Data Researchers do not ordinarily like missing data. They typically take great care to avoid these gaps whenever possible. But sometimes it is actually better not to observe every variable on every occasion. Matthai (1951) and Lord (1955) described designs where certain data values are intentionally not observed. The basic principle employed in such designs is that, when it is impossible or too costly to obtain sufficient observations on a variable, estimates with improved accuracy can be obtained by taking additional observations on other correlated variables. Such designs can be highly useful, but because of computational difficulties, they have not previously been employed except in very simple situations. This example describes only one of many possible designs where some data are intentionally not collected. The method of analysis is the same as in Example 17. 283 284 Example 18 About the Data For this example, the Attig data (introduced in Example 1) was modified by eliminating some of the data values and treating them as missing. A portion of the modified data file for young people, Atty_mis.sav, is shown below as it appears in the SPSS Statistics Data Editor. The file contains scores of Attig’s 40 young subjects on the two vocabulary tests v_short and vocab. The variable vocab is the WAIS vocabulary score. V_short is the score on a small subset of items on the WAIS vocabulary test. Vocab scores were deleted for 30 randomly picked subjects. A second data file, Atto_mis.sav, contains vocabulary test scores for the 40 old subjects, again with 30 randomly picked vocab scores deleted. 285 More about Missing Data Of course, no sensible person deletes data that have already been collected. In order for this example to make sense, imagine this pattern of missing data arising in the following circumstances. Suppose that vocab is the best vocabulary test you know of. It is highly reliable and valid, and it is the vocabulary test that you want to use. Unfortunately, it is an expensive test to administer. Maybe it takes a long time to give the test, maybe it has to be administered on an individual basis, or maybe it has to be scored by a highly trained person. V_short is not as good a vocabulary test, but it is short, inexpensive, and easy to administer to a large number of people at once. You administer the cheap test, v_short, to 40 young and 40 old subjects. Then you randomly pick 10 people from each group and ask them to take the expensive test, vocab. Suppose the purpose of the research is to: Estimate the average vocab test score in the population of young people. Estimate the average vocab score in the population of old people. Test the hypothesis that young people and old people have the same average vocab score. In this scenario, you are not interested in the average v_short score. However, as will be demonstrated below, the v_short scores are still useful because they contain information that can be used to estimate and test hypotheses about vocab scores. The fact that missing values are missing by design does not affect the method of analysis. Two models will be fitted to the data. In both models, means, variances, and the covariance between the two vocabulary tests will be estimated for young people and also for old people. In Model A, there will be no constraints requiring parameter estimates to be equal across groups. In Model B, vocab will be required to have the same mean in both groups. Model A To estimate means, variances, and the covariance between vocab and v_short, set up a two-group model for the young and old groups. E Draw a path diagram in which vocab and v_short appear as two rectangles connected by a double-headed arrow. E From the menus, choose View > Analysis Properties. 286 Example 18 E In the Analysis Properties dialog box, click the Estimation tab. E Select Estimate means and intercepts (a check mark appears next to it). E While the Analysis Properties dialog box is open, click the Output tab. E Select Standardized estimates and Critical ratios for differences. Because this example focuses on group differences in the mean of vocab, it will be useful to have names for the mean of the young group and the mean of the old group. To give a name to the mean of vocab in the young group: E Right-click the vocab rectangle in the path diagram for the young group. E Choose Object Properties from the pop-up menu. E In the Object Properties dialog box, click the Parameters tab. E Enter a name, such as m1_yng, in the Mean text box. E Follow the same procedure for the old group. Be sure to give the mean of the old group a unique name, such as m1_old. Naming the means does not constrain them as long as each name is unique. After the means are named, the two groups should have path diagrams that look something like this: m1_yng, vocab m1_old, v_short Example 18: Model A Incompletely observed data. Attig (1983) young subjects Model Specification vocab v_short Example 18: Model A Incompletely observed data. Attig (1983) old subjects Model Specification 287 More about Missing Data Results for Model A Graphics Output Here are the two path diagrams containing means, variances, and covariances for the young and old subjects respectively: 56.89, 83.32 vocab 7.95, 15.35 v_short 65.00, 115.06 vocab 10.03, 10.77 v_short 32.92 31.54 Example 18: Model A Incompletely observed data. Attig (1983) young subjects Unstandardized estimates Example 18: Model A Incompletely observed data. Attig (1983) old subjects Unstandardized estimates Text Output E In the Amos Output window, click Notes for Model in the upper left pane. The text output shows that Model A is saturated, so that the model is not testable. Number of distinct sample moments: Number of distinct parameters to be estimated: Degrees of freedom (10 – 10): 10 10 0 288 Example 18 The parameter estimates and standard errors for young subjects are: Means: (young subjects - Default model) vocab v_short Estimate 56.891 7.950 S.E. 1.765 .627 C.R. 32.232 12.673 P *** *** Label m1_yng par_4 Covariances: (young subjects - Default model) vocab <--> v_short Estimate 32.916 S.E. 8.694 C.R. 3.786 P *** Label par_3 Correlations: (young subjects - Default model) vocab <--> v_short Estimate .920 Variances: (young subjects - Default model) vocab v_short Estimate 83.320 15.347 S.E. 25.639 3.476 C.R. P 3.250 .001 4.416 *** Label par_7 par_8 The parameter estimates and standard errors for old subjects are: Means: (old subjects - Default model) vocab v_short Estimate 65.001 10.025 S.E. 2.167 .526 C.R. 29.992 19.073 P *** *** Label m1_old par_6 Covariances: (old subjects - Default model) vocab <--> v_short Estimate 31.545 S.E. 8.725 C.R. 3.616 P *** Label par_5 Correlations: (old subjects - Default model) vocab <--> v_short Estimate .896 Variances: (old subjects - Default model) vocab v_short Estimate 115.063 10.774 S.E. 37.463 2.440 C.R. P 3.071 .002 4.416 *** Label par_9 par_10 The estimates for the mean of vocab are 56.891 in the young population and 65.001 in the old population. Notice that these are not the same as the sample means that would have been obtained from the 10 young and 10 old subjects who took the vocab test. The sample means of 58.5 and 62 are good estimates of the population means (the best that can be had from the two samples of size 10), but the Amos estimates (56.891 and 65.001) have the advantage of using information in the v_short scores. How much more accurate are the mean estimates that include the information in the v_short scores? Some idea can be obtained by looking at estimated standard errors. For the young subjects, the standard error for 56.891 shown above is about 1.765, whereas the standard error of the sample mean, 58.5, is about 2.21. For the old subjects, the standard error for 65.001 is about 2.167 while the standard error of the sample mean, 289 More about Missing Data 62, is about 4.21. Although the standard errors just mentioned are only approximations, they still provide a rough basis for comparison. In the case of the young subjects, using the information contained in the v_short scores reduces the standard error of the estimated vocab mean by about 21%. In the case of the old subjects, the standard error was reduced by about 49%. Another way to evaluate the additional information that can be attributed to the v_short scores is by evaluating the sample size requirements. Suppose you did not use the information in the v_short scores. How many more young examinees would have to take the vocab test to reduce the standard error of its mean by 21%? Likewise, how many more old examinees would have to take the vocab test to reduce the standard error of its mean by 49%? The answer is that, because the standard error of the mean is inversely proportional to the square root of the sample size, it would require about 1.6 times as many young subjects and about 3.8 times as many old subjects. That is, it would require about 16 young subjects and 38 old subjects taking the vocab test, instead of 10 young and 10 old subjects taking both tests, and 30 young and 30 old subjects taking the short test alone. Of course, this calculation treats the estimated standard errors as though they were exact standard errors, and so it gives only a rough idea of how much is gained by using scores on the v_short test. Do the young and old populations have different mean vocab scores? The estimated mean difference is 8.110 (65.001 – 56.891). A critical ratio for testing this difference for significance can be found in the following table: Critical Ratios for Differences between Parameters (Default model) m1_yng m1_old par_3 par_4 par_5 par_6 par_7 par_8 par_9 par_10 m1_yng .000 2.901 -2.702 -36.269 -2.847 -25.448 1.028 -10.658 1.551 -15.314 m1_old par_3 par_4 par_5 par_6 par_7 .000 -3.581 -25.286 -3.722 -30.012 .712 -12.123 1.334 -16.616 .000 -2.864 -.111 -2.628 2.806 -2.934 2.136 -2.452 .000 2.697 2.535 2.939 2.095 2.859 1.121 .000 -2.462 1.912 -1.725 2.804 -3.023 .000 2.858 1.514 2.803 .300 .000 -2.877 .699 -2.817 Critical Ratios for Differences between Parameters (Default model) par_8 par_9 par_10 par_8 .000 2.650 -1.077 par_9 par_10 .000 -2.884 .000 290 Example 18 The first two rows and columns, labeled m1_yng and m1_old, refer to the group means of the vocab test. The critical ratio for the mean difference is 2.901, according to which the means differ significantly at the 0.05 level; the older population scores higher on the long test than the younger population. Another test of the hypothesis of equal vocab group means can be obtained by refitting the model with equality constraints imposed on these two means. We will do that next. Model B In Model B, vocab is required to have the same mean for young people as for old people. There are two ways to impose this constraint. One method is to change the names of the means. In Model A, each mean has a unique name. You can change the names and give each mean the same name. This will have the effect of requiring the two mean estimates to be equal. A different method of constraining the means will be used here. The name of the means, m1_yng and m1_old, will be left alone. Amos will use its Model Manager to fit both Model A and Model B in a single analysis. To use this approach: E Start with Model A. E From the menus, choose Analyze > Manage Models. E In the Manage Models dialog box, type Model A in the Model Name text box. E Leave the Parameter Constraints box empty. 291 More about Missing Data E To specify Model B, click New. E In the Model Name text box, change Model Number 2 to Model B. E Type m1_old = m1_yng in the Parameter Constraints text box. E Click Close. A path diagram that fits both Model A and Model B is saved in the file Ex18-b.amw. Output from Models A and B E To see fit measures for both Model A and Model B, click Model Fit in the tree diagram in the upper left pane of the Amos Output window. The portion of the output that contains chi-square values is shown here: CMIN Model Model A Model B Saturated model Independence model NPAR 10 9 10 4 CMIN .000 7.849 .000 33.096 DF 0 1 0 6 P CMIN/DF .005 7.849 .000 5.516 If Model B is correct (that is, the young and old populations have the same mean vocab score), then 7.849 is an observation on a random variable that has a chi-square distribution with one degree of freedom. The probability of getting a value as large as 7.849 by chance is small (p = 0.005), so Model B is rejected. In other words, young and old subjects differ significantly in their mean vocab scores.] 292 Example 18 Modeling in VB.NET Model A The following program fits Model A. It estimates means, variances, and covariances of both vocabulary tests in both groups of subjects, without constraints. The program is saved as Ex18-a.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Crdiff() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(Sem.AmosDir & "Examples\atty_mis.sav") Sem.GroupName("young_subjects") Sem.Mean("vocab", "m1_yng") Sem.Mean("v_short") Sem.BeginGroup(Sem.AmosDir & "Examples\atto_mis.sav") Sem.GroupName("old_subjects") Sem.Mean("vocab", "m1_old") Sem.Mean("v_short") Sem.FitModel() Finally Sem.Dispose() End Try End Sub The Crdiff method displays the critical ratios for parameter differences that were discussed earlier. For later reference, note the value of the Function of log likelihood for Model A. Function of log likelihood = 429.963 Number of parameters = 10 293 More about Missing Data Model B Here is a program for fitting Model B. In this program, the same parameter name (mn_vocab) is used for the vocab mean of the young group as for the vocab mean of the old group. In this way, the young group and old group are required to have the same vocab mean. The program is saved as Ex18-b.vb. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Crdiff() Sem.ModelMeansAndIntercepts() Sem.BeginGroup(Sem.AmosDir & "Examples\atty_mis.sav") Sem.GroupName("young_subjects") Sem.Mean("vocab", "mn_vocab") Sem.Mean("v_short") Sem.BeginGroup(Sem.AmosDir & "Examples\atto_mis.sav") Sem.GroupName("old_subjects") Sem.Mean("vocab", "mn_vocab") Sem.Mean("v_short") Sem.FitModel() Finally Sem.Dispose() End Try End Sub Amos reports the fit of Model B as: Function of log likelihood = 437.813 Number of parameters = 9 The difference in fit measures between Models B and A is 7.85 (= 437.813 – 429.963), and the difference in the number of parameters is 1 (= 10 – 9). These are the same figures we obtained earlier with Amos Graphics. Example 19 Bootstrapping Introduction This example demonstrates how to obtain robust standard error estimates by the bootstrap method. The Bootstrap Method The bootstrap (Efron, 1982) is a versatile method for estimating the sampling distribution of parameter estimates. In particular, the bootstrap can be used to find approximate standard errors. As we saw in earlier examples, Amos automatically displays approximate standard errors for the parameters it estimates. In computing these approximations, Amos uses formulas that depend on the assumptions on p. 35. The bootstrap is a completely different approach to the problem of estimating standard errors. Why would you want another approach? To begin with, Amos does not have formulas for all of the standard errors you might want, such as standard errors for squared multiple correlations. The unavailability of formulas for standard errors is never a problem with the bootstrap, however. The bootstrap can be used to generate an approximate standard error for every estimate that Amos computes, whether or not a formula for the standard error is known. Even when Amos has formulas for standard errors, the formulas are good only under the assumptions on p. 35. Not only that, but the formulas work only when you are using a correct model. Approximate standard errors arrived at by the bootstrap do not suffer from these limitations. 295 296 Example 19 The bootstrap has its own shortcomings, including the fact that it can require fairly large samples. For readers who are new to bootstrapping, we recommend the Scientific American article by Diaconis and Efron (1983). The present example demonstrates the bootstrap with a factor analysis model, but, of course, you can use the bootstrap with any model. Incidentally, don’t forget that Amos can solve simple estimation problems like the one in Example 1. You might choose to use Amos for such simple problems just so you can use the bootstrapping capability of Amos. About the Data We will use the Holzinger and Swineford (1939) data, introduced in Example 8, for this example. The data are contained in the file Grnt_fem.sav. A Factor Analysis Model The path diagram for this model (Ex19.amw) is the same as in Example 8. 1 spatial visperc cubes lozenges 1 verbal paragraph sentence wordmean 1 1 1 1 1 1 err_v err_c err_l err_p err_s err_w Example 19: Bootstrapping Holzinger and Swineford (1939) Girls' sample Model Specification E To request 500 bootstrap replications, from the menus, choose View > Analysis Properties. 297 Bootstrapping E Click the Bootstrap tab. E Select Perform bootstrap. E Type 500 in the Number of bootstrap samples text box. Monitoring the Progress of the Bootstrap You can monitor the progress of the bootstrap algorithm by watching the Computation summary panel at the left of the path diagram. Results of the Analysis The model fit is, of course, the same as in Example 8. Chi-square = 7.853 Degrees of freedom = 8 Probability level = 0.448 The parameter estimates are also the same as in Example 8. However, we would now like to look at the standard error estimates based on the maximum likelihood theory, so that we can compare them to standard errors obtained from the bootstrap. Here, then, are the maximum likelihood estimates of parameters and their standard errors: 298 Example 19 Regression Weights: (Group number 1 - Default model) Estimate S.E. C.R. 1.000 .610 .143 4.250 1.198 .272 4.405 1.000 1.334 .160 8.322 2.234 .263 8.482 visperc <--- spatial cubes <--- spatial lozenges <--- spatial paragrap <--- verbal sentence <--- verbal wordmean <--- verbal P Label *** *** *** *** Standardized Regression Weights: (Group number 1 Default model) visperc <--cubes <--lozenges <--paragrap <--sentence <--wordmean <--- spatial spatial spatial verbal verbal verbal Estimate .703 .654 .736 .880 .827 .841 Covariances: (Group number 1 - Default model) spatial <--> verbal Estimate S.E. C.R. P 7.315 2.571 2.846 .004 Label Correlations: (Group number 1 - Default model) spatial <--> verbal Estimate .487 Variances: (Group number 1 - Default model) spatial verbal err_v err_c err_l err_p err_s err_w Estimate S.E. C.R. P 23.302 8.123 2.868 .004 9.682 2.159 4.485 *** 23.873 5.986 3.988 *** 11.602 2.584 4.490 *** 28.275 7.892 3.583 *** 2.834 .868 3.263 .001 7.967 1.869 4.263 *** 19.925 4.951 4.024 *** Label Squared Multiple Correlations: (Group number 1 Default model) wordmean sentence paragrap lozenges cubes visperc Estimate .708 .684 .774 .542 .428 .494 299 Bootstrapping The bootstrap output begins with a table of diagnostic information that is similar to the following: 0 bootstrap samples were unused because of a singular covariance matrix. 0 bootstrap samples were unused because a solution was not found. 500 usable bootstrap samples were obtained. It is possible that one or more bootstrap samples will have a singular covariance matrix, or that Amos will fail to find a solution for some bootstrap samples. If any such samples occur, Amos reports their occurrence and omits them from the bootstrap analysis. In the present example, no bootstrap sample had a singular covariance matrix, and a solution was found for each of the 500 bootstrap samples. The bootstrap estimates of standard errors are: 300 Example 19 Scalar Estimates (Group number 1 - Default model) Regression Weights: (Group number 1 - Default model) Parameter SE SE-SE Mean Bias visperc <--- spatial .000 .000 1.000 .000 cubes <--- spatial .140 .004 .609 -.001 lozenges <--- spatial .373 .012 1.216 .018 paragrap <--- verbal .000 .000 1.000 .000 sentence <--- verbal .176 .006 1.345 .011 wordmean <--- verbal .254 .008 2.246 .011 SE-Bias .000 .006 .017 .000 .008 .011 Standardized Regression Weights: (Group number 1 Default model) Parameter SE SE-SE Mean visperc <--- spatial .123 .004 .709 cubes <--- spatial .101 .003 .646 lozenges <--- spatial .121 .004 .719 paragrap <--- verbal .047 .001 .876 sentence <--- verbal .042 .001 .826 wordmean <--- verbal .050 .002 .841 Bias .006 -.008 -.017 -.004 .000 -.001 SE-Bias .005 .005 .005 .002 .002 .002 Covariances: (Group number 1 - Default model) Parameter SE SE-SE Mean Bias spatial <--> verbal 2.393 .076 7.241 -.074 SE-Bias .107 Correlations: (Group number 1 - Default model) Parameter SE SE-SE Mean Bias spatial <--> verbal .132 .004 .495 .008 SE-Bias .006 Variances: (Group number 1 - Default model) Parameter spatial verbal err_v err_c err_l err_p err_s err_w SE SE-SE Mean Bias 9.086 .287 23.905 .603 2.077 .066 9.518 -.164 9.166 .290 22.393 -1.480 3.195 .101 11.191 -.411 9.940 .314 27.797 -.478 .878 .028 2.772 -.062 1.446 .046 7.597 -.370 5.488 .174 19.123 -.803 SE-Bias .406 .093 .410 .143 .445 .039 .065 .245 Squared Multiple Correlations: (Group number 1 Default model) Parameter wordmean sentence paragrap lozenges cubes visperc SE SE-SE Mean Bias .083 .003 .709 .001 .069 .002 .685 .001 .081 .003 .770 -.004 .172 .005 .532 -.010 .127 .004 .428 .000 .182 .006 .517 .023 SE-Bias .004 .003 .004 .008 .006 .008 301 Bootstrapping The first column, labeled S.E., contains bootstrap estimates of standard errors. These estimates may be compared to the approximate standard error estimates obtained by maximum likelihood. The second column, labeled S.E.-S.E., gives an approximate standard error for the bootstrap standard error estimate itself. The column labeled Mean represents the average parameter estimate computed across bootstrap samples. This bootstrap mean is not necessarily identical to the original estimate. The column labeled Bias gives the difference between the original estimate and the mean of estimates across bootstrap samples. If the mean estimate across bootstrapped samples is higher than the original estimate, then Bias will be positive. The last column, labeled S.E.-Bias, gives an approximate standard error for the bias estimate. Modeling in VB.NET The following program (Ex19.vb) fits the model of Example 19 and performs a bootstrap with 500 bootstrap samples. The program is the same as in Example 8, but with an additional Bootstrap line. Sub Main() Dim Sem As New AmosEngine Try Sem.TextOutput() Sem.Bootstrap(500) Sem.Standardized() Sem.Smc() Sem.BeginGroup(Sem.AmosDir & "Examples\Grnt_fem.sav") Sem.AStructure("visperc = (1) spatial + (1) err_v") Sem.AStructure("cubes = spatial + (1) err_c") Sem.AStructure("lozenges = spatial + (1) err_l") Sem.AStructure("paragrap = (1) verbal + (1) err_p") Sem.AStructure("sentence = verbal + (1) err_s") Sem.AStructure("wordmean = verbal + (1) err_w") Sem.FitModel() Finally Sem.Dispose() End Try End Sub The line Sem.Bootstrap(500) requests bootstrap standard errors based on 500 bootstrap samples. Example 20 Bootstrapping for Model Comparison Introduction This example demonstrates the use of the bootstrap for model comparison. Bootstrap Approach to Model Comparison The problem addressed by this method is not that of evaluating an individual model in absolute terms but of choosing among two or more competing models. Bollen and Stine (1992), Bollen (1982), and Stine (1989) suggested the possibility of using the bootstrap for model selection in analysis of moment structures. Linhart and Zucchini (1986) described a general schema for bootstrapping and model selection that is appropriate for a large class of models, including structural modeling. The Linhart and Zucchini approach is employed here. The bootstrap approach to model comparison can be summarized as follows: Generate several bootstrap samples by sampling with replacement from the original sample. In other words, the original sample serves as the population for purposes of bootstrap sampling. Fit every competing model to every bootstrap sample. After each analysis, calculate the discrepancy between the implied moments obtained from the bootstrap sample and the moments of the bootstrap population. Calculate the average (across bootstrap samples) of the discrepancies for each model from the previous step. Choose the model whose average discrepancy is smallest. 303 304 Example 20 About the Data The present example uses the combined male and female data from the Grant-White high school sample of the Holzinger and Swineford (1939) study, previously discussed in Examples 8, 12, 15, 17, and 19. The 145 combined observations are given in the file Grant.sav. Five Models Five measurement models will be fitted to the six psychological tests. Model 1 is a factor analysis model with one factor. visperc 1 cubes lozenges 1 1 1 e_v e_c e_l F1 paragraph sentence wordmean 1 1 1 e_p e_s e_w Example 20: Model 1 One-factor model Holzinger and Swineford (1939) data Model Specification 305 Bootstrapping for Model Comparison Model 2 is an unrestricted factor analysis with two factors. Note that fixing two of the regression weights at 0 does not constrain the model but serves only to make the model identified (Anderson, 1984; Bollen and Jöreskog, 1985; Jöreskog, 1979). visperc F1 cubes 1 0 lozenges paragraph F2 sentence 1 e_v 1 e_c 1 e_l 1 e_p 1 e_s 0 1 wordmean 1 e_w Example 20: Model 2 Two unconstrained factors Holzinger and Swineford (1939) data Model Specification Model 2R is a restricted factor analysis model with two factors, in which the first three tests depend upon only one of the factors while the remaining three tests depend upon only the other factor. visperc F1 cubes 1 1 e_v e_c 1 lozenges paragraph F2 sentence 1 1 1 e_l e_p e_s 1 wordmean 1 e_w Example 20: Model 2R Restricted two-factor model Holzinger and Swineford (1939) data Model Specification 306 Example 20 The remaining two models provide customary points of reference for evaluating the fit of the previous models. In the saturated model, the variances and covariances of the observed variables are unconstrained. visperc cubes lozenges paragraph sentence wordmean Example 20: Saturated model Variances and covariances Holzinger and Swineford (1939) data Model Specification In the independence model, the variances of the observed variables are unconstrained and their covariances are required to be 0. visperc cubes lozenges paragraph sentence wordmean Example 20: Independence model Only variances are estimated Holzinger and Swineford (1939) data Model Specification 307 Bootstrapping for Model Comparison You would not ordinarily fit the saturated and independence models separately, since Amos automatically reports fit measures for those two models in the course of every analysis. However, it is necessary to specify explicitly the saturated and independence models in order to get bootstrap results for those models. Five separate bootstrap analyses must be performed, one for each model. For each of the five analyses: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Bootstrap tab. E Select Perform bootstrap (a check mark appears next to it). E Type 1000 in the Number of bootstrap samples text box. E Click the Random # tab and enter a value for Seed for random numbers. It does not matter what seed you choose, but in order to draw the exact same set of samples in each of several Amos sessions, the same seed number must be given each time. For this example, we used a seed of 3. Occasionally, bootstrap samples are encountered for which the minimization algorithm does not converge. To keep overall computation times in check: 308 Example 20 E Click the Numerical tab and limit the number of iterations to a realistic figure (such as 40) in the Iteration limit field. Amos Graphics input files for the five models have been saved with the names Ex20-1.amw, Ex20-2.amw, Ex20-2r.amw, Ex20-sat.amw, and Ex20-ind.amw. Text Output E In viewing the text output for Model 1, click Summary of Bootstrap Iterations in the tree diagram in the upper left pane of the Amos Output window. The following message shows that it was not necessary to discard any bootstrap samples. All 1,000 bootstrap samples were used. 0 bootstrap samples were unused because of a singular covariance matrix. 0 bootstrap samples were unused because a solution was not found. 1000 usable bootstrap samples were obtained. E Click Bootstrap Distributions in the tree diagram to see a histogram of C ML (αˆb ,a ) = C KL (αˆb ,a )− C KL (a,a ), b = 1, K ,1000 where a contains sample moments from the original sample of 145 Grant-White ˆ b contains the students (that is, the moments in the bootstrap population), and α 309 Bootstrapping for Model Comparison implied moments obtained from fitting Model 1 to the b-th bootstrap sample. Thus, ˆ b, a ) is a measure of how much the population moments differ from the C ML ( α moments estimated from the b-th bootstrap sample using Model 1. ML discrepancy (implied vs pop) (Default model) 48.268 52.091 55.913 59.735 63.557 67.379 71.202 75.024 78.846 82.668 86.490 90.313 94.135 97.957 101.779 N = 1000 Mean = 64.162 S. e. = .292 |-------------------|** |********* |************* |******************* |***************** |************ |******** |****** |*** |* |** |** |* |* |* |-------------------- ˆ b, a ) over 1,000 bootstrap samples was 64.162 with a standard The average of C ML ( α error of 0.292. Similar histograms, along with means and standard errors, are displayed for the other four models but are not reproduced here. The average discrepancies for the five competing models are shown in the table below, along with values of BCC, AIC, and CAIC. The table provides fit measures for five competing models (standard errors in parentheses). Model Failures Mean Discrepancy BCC AIC CAIC 1 2 2R Sat. Indep. 0 19 0 0 0 64.16 (0.29) 29.14 (0.35 26.57 (0.30) 32.05 (0.37) 334.32 (0.24) 68.17 36.81 30.97 44.15 333.93 66.94 35.07 29.64 42.00 333.32 114.66 102.68 81.34 125.51 357.18 The Failures column in the table indicates that the likelihood function of Model 2 could not be maximized for 19 of the 1,000 bootstrap samples, at least not with the iteration limit of 40. Nineteen additional bootstrap samples were generated for Model 2 in order to bring the total number of bootstrap samples to the target of 1,000. The 19 samples where Model 2 could not be fitted successfully caused no problem with the other four models. Consequently, 981 bootstrap samples were common to all five models. No attempt was made to find out why Model 2 estimates could not be computed for 19 bootstrap samples. As a rule, algorithms for analysis of moment structures tend to 310 Example 20 fail for models that fit poorly. If some way could be found to successfully fit Model 2 to these 19 samples—for example, with hand-picked start values or a superior algorithm—it seems likely that the discrepancies would be large. According to this line of reasoning, discarding bootstrap samples for which estimation failed would lead to a downward bias in the mean discrepancy. Thus, you should be concerned by estimation failures during bootstrapping, primarily when they occur for the model with the lowest mean discrepancy. In this example, the lowest mean discrepancy (26.57) occurs for Model 2R, confirming the model choice based on the BCC, AIC, and CAIC criteria. The differences among the mean discrepancies are large compared to their standard errors. Since all models were fitted to the same bootstrap samples (except for samples where Model 2 was not successfully fitted), you would expect to find positive correlations across bootstrap samples between discrepancies for similar models. Unfortunately, Amos does not report those correlations. Calculating the correlations by hand shows that they are close to 1, so that standard errors for the differences between means in the table are, on the whole, even smaller than the standard errors of the means. Summary The bootstrap can be a practical aid in model selection for analysis of moment structures. The Linhart and Zucchini (1986) approach uses the expected discrepancy between implied and population moments as the basis for model comparisons. The method is conceptually simple and easy to apply. It does not employ any arbitrary magic number such as a significance level. Of course, the theoretical appropriateness of competing models and the reasonableness of their associated parameter estimates are not taken into account by the bootstrap procedure and need to be given appropriate weight at some other stage in the model evaluation process. Modeling in VB.NET Visual Basic programs for this example are in the files Ex20-1.vb, Ex20-2.vb, Ex202r.vb, Ex20-ind.vb, and Ex20-sat.vb. Example 21 Bootstrapping to Compare Estimation Methods Introduction This example demonstrates how bootstrapping can be used to choose among competing estimation criteria. Estimation Methods The discrepancy between the population moments and the moments implied by a model depends not only on the model but also on the estimation method. The technique used in Example 20 to compare models can be adapted to the comparison of estimation methods. This capability is particularly needed when choosing among estimation methods that are known to be optimal only asymptotically, and whose relative merits in finite samples would be expected to depend on the model, the sample size, and the population distribution. The principal obstacle to carrying out this program for comparing estimation methods is that it requires a prior decision about how to measure the discrepancy between the population moments and the moments implied by the model. There appears to be no way to make this decision without favoring some estimation criteria over others. Of course, if every choice of population discrepancy leads to the same conclusion, questions about which is the appropriate population discrepancy can be considered academic. The present example presents such a clear-cut case. 311 312 Example 21 About the Data The Holzinger-Swineford (1939) data from Example 20 (in the file Grant.sav) are used in the present example. About the Model The present example estimates the parameters of Model 2R from Example 20 by four alternative methods: Asymptotically distribution-free (ADF), maximum likelihood (ML), generalized least squares (GLS), and unweighted least squares (ULS). To compare the four estimation methods, you need to run Amos four times. To specify the estimation method and bootstrap parameters: E From the menus, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Random # tab. E Enter a Seed for random numbers. As we discussed in Example 20, it does not matter what seed value you choose, but in order to draw the exact same set of samples in each of several Amos sessions, the same seed number must be given each time. In this example, we use a seed of 3. E Next, click the Estimation tab. E Select the Asymptotically distribution-free discrepancy. This discrepancy specifies that ADF estimation should be used to fit the model to each bootstrap sample. 313 Bootstrapping to Compare Estimation Method s E Finally, click the Bootstrap tab. E Select Perform bootstrap and type 1000 for Number of bootstrap samples. E Select Bootstrap ADF, Bootstrap ML, Bootstrap GLS, and Bootstrap ULS. 314 Example 21 Selecting Bootstrap ADF, Bootstrap ML, Bootstrap GLS, Bootstrap SLS, and Bootstrap ULS specifies that each of CADF , CML, CGLS, and CULS is to be used to measure the discrepancy between the sample moments in the original sample and the implied moments from each bootstrap sample. To summarize, when you perform the analysis (Analyze > Calculate Estimates), Amos will fit the model to each of 1,000 bootstrap samples using the ADF discrepancy. For each bootstrap sample, the closeness of the implied moments to the population moments will be measured four different ways, using CADF , CML, CGLS, and CULS. 315 Bootstrapping to Compare Estimation Method s E Select the Maximum likelihood discrepancy to repeat the analysis. E Select the Generalized least squares discrepancy to repeat the analysis again. E Select the Unweighted least squares discrepancy to repeat the analysis one last time. The four Amos Graphics input files for this example are Ex21-adf.amw, Ex21-ml.amw, Ex21-gls.amw, and Ex21-uls.amw. Text Output In the first of the four analyses (as found in Ex21-adf.amw), estimation using ADF produces the following histogram output. To view this histogram: E Click Bootstrap Distributions > ADF Discrepancy (implied vs pop) in the tree diagram in the upper left pane of the Amos Output window. 316 Example 21 ADF discrepancy (implied vs pop) (Default model) N = 1000 Mean = 20.601 S. e. = .218 7.359 10.817 14.274 17.732 21.189 24.647 28.104 31.562 35.019 38.477 41.934 45.392 48.850 52.307 55.765 |-------------------|* |******** |**************** |******************** |******************* |************* |******** |**** |** |** |* |* |* |* |* |-------------------- This portion of the output shows the distribution of the population discrepancy ˆ b, a ) across 1,000 bootstrap samples, where α ˆ b contains the implied moments C ADF ( α ˆ b, a b ) , that is, the sample discrepancy. The average of obtained by minimizing C ADF ( α ˆ b, a ) across 1,000 bootstrap samples is 20.601, with a standard error of 0.218. C ADF ( α ˆ b, a ) . To view this histogram: The following histogram shows the distribution of C ML ( α E Click Bootstrap Distributions > ML Discrepancy (implied vs pop) in the tree diagram in the upper left pane of the Amos Output window. ML discrepancy (implied vs pop) (Default model) N = 1000 Mean = 36.860 S. e. = .571 11.272 22.691 34.110 45.530 56.949 68.368 79.787 91.207 102.626 114.045 125.464 136.884 148.303 159.722 171.142 |-------------------|**** |******************** |******************** |*********** |***** |*** |** |* |* |* |* | | | |* |-------------------- 317 Bootstrapping to Compare Estimation Method s ˆ b, a ) . To view this histogram: The following histogram shows the distribution of C GLS ( α E Click Bootstrap Distributions > GLS Discrepancy (implied vs pop) in the tree diagram in the upper left pane of the Amos Output window. GLS discrepancy (implied vs pop) (Default model) N = 1000 Mean = 21.827 S. e. = .263 7.248 11.076 14.904 18.733 22.561 26.389 30.217 34.046 37.874 41.702 45.530 49.359 53.187 57.015 60.844 |-------------------|** |********* |*************** |******************** |************** |*********** |******* |**** |** |*** |* |* |* |* |* |-------------------- ˆ b, a ) . To view this histogram: The following histogram shows the distribution of C ULS ( α E Click Bootstrap Distributions > ULS Discrepancy (implied vs pop) in the tree diagram in the upper left pane of the Amos Output window. ULS discrepancy (implied vs pop) (Default model) N = 1000 Mean = 43686.444 S. e. = 1011.591 5079.897 30811.807 56543.716 82275.625 108007.534 133739.443 159471.352 185203.261 210935.170 236667.079 262398.988 288130.897 313862.806 339594.715 365326.624 |-------------------|****** |******************** |******** |**** |** |* |* |* | |* | | | | |* |-------------------- 318 Example 21 ˆ b, a ) across 1,000 bootstrap samples with Below is a table showing the mean of C ( α the standard errors in parentheses. The four distributions just displayed are summarized in the first row of the table. The remaining three rows show the results of estimation by minimizing CML, CGLS, and CULS, respectively. ˆ b, a b ) Population discrepancy for evaluation: C ( α CADF Sample discrepancy CML for estimation C GLS ˆ b, a b ) C(α CULS CADF 20.60 (0.22) 19.19 (0.20) 19.45 (0.20) 24.89 (0.35) CML 36.86 (0.57) 26.57 (0.30) 31.45 (0.40) 31.78 (0.43) CGLS 21.83 (0.26) 18.96 (0.22) 19.03 (0.21) 24.16 (0.33) CULS 43686 (1012) 34760 (830) 37021 (830) 35343 (793) The first column, labeled CADF , shows the relative performance of the four estimation methods according to the population discrepancy, CADF . Since 19.19 is the smallest mean discrepancy in the CADF column, CML is the best estimation method according to the CADF criterion. Similarly, examining the CML column of the table shows that CML is the best estimation method according to the CML criterion. Although the four columns of the table disagree on the exact ordering of the four estimation methods, ML is, in all cases, the method with the lowest mean discrepancy. The difference between ML estimation and GLS estimation is slight in some cases. Unsurprisingly, ULS estimation performed badly, according to all of the population discrepancies employed. More interesting is the poor performance of ADF estimation, indicating that ADF estimation is unsuited to this combination of model, population, and sample size. Modeling in VB.NET Visual Basic programs for this example are in the files Ex21-adf.vb, Ex21-gls.vb, Ex21-ml.vb, and Ex21-uls.vb. Example 22 Specification Search Introduction This example takes you through two specification searches: one is largely confirmatory (with few optional arrows), and the other is largely exploratory (with many optional arrows). About the Data This example uses the Felson and Bohrnstedt (1979) girls’ data, also used in Example 7. About the Model The initial model for the specification search comes from Felson and Bohrnstedt (1979), as seen in Figure 22-1: 319 320 Example 22 GPA academic 1 error1 height weight attract 1 error2 rating Figure 22-1: Felson and Bohrnstedt’s model for girls Specification Search with Few Optional Arrows Felson and Bohrnstedt were primarily interested in the two single-headed arrows, academic←attract and attract←academic. The question was whether one or both, or possibly neither, of the arrows was needed. For this reason, you will make both arrows optional during this specification search. The double-headed arrow connecting error1 and error2 is an undesirable feature of the model because it complicates the interpretation of the effects represented by the single-headed arrows, and so you will also make it optional. The specification search will help to decide which of these three optional arrows, if any, are essential to the model. This specification search is largely confirmatory because most arrows are required by the model, and only three are optional. Specifying the Model E Open Ex22a.amw. If you performed a typical installation, the path is C:\Program Files\IBM\SPSS\Amos\21\Examples\ \Ex22a.amw. The path diagram opens in the drawing area. Initially, there are no optional arrows, as seen in Figure 22-1. E From the menus, choose Analyze > Specification Search. The Specification Search window appears. Initially, only the toolbar is visible. 321 Specification Search E Click on the Specification Search toolbar, and then click the double-headed arrow that connects error1 and error2. The arrow changes color to indicate that the arrow is optional. Tip: If you want the optional arrow to be dashed as well as colored, as seen below, choose View → Interface Properties from the menus, click the Accessibility tab, and select the Alternative to color check box. GPA academic 1 error1 height weight attract 1 error2 rating E To make the arrow required again, click on the Specification Search toolbar, and then click the arrow. When you move the pointer away, the arrow will again display as a required arrow. E Click again, and then click the arrows in the path diagram until it looks like this: GPA academic 1 error1 height weight rating attract 1 error2 322 Example 22 When you perform the exploratory analysis later on, the program will treat the three colored arrows as optional and will try to fit the model using every possible subset of them. Selecting Program Options E Click the Options button on the Specification Search toolbar. E In the Options dialog box, click the Current results tab. E Click Reset to ensure that your options are the same as those used in this example. E Now click the Next search tab. The text at the top indicates that the exploratory analysis will fit eight (that is, 23) models. E In the Retain only the best ___ models box, change the value from 10 to 0. With a default value of 10, the specification search reports at most 10 one-parameter models, at most 10 two-parameter models, and so on. If the value is set to 0, there is no limitation on the number of models reported. 323 Specification Search Limiting the number of models reported can speed up a specification search significantly. However, only eight models in total will be encountered during the specification search for this example, and specifying a nonzero value for Retain only the best ___ models would have the undesirable side effect of inhibiting the program from normalizing Akaike weights and Bayes factors so that they sum to 1 across all models, as seen later. E Close the Options dialog box. Performing the Specification Search E Click on the Specification Search toolbar. The program fits the model eight times, using every subset of the optional arrows. When it finishes, the Specification Search window expands to show the results. 324 Example 22 The following table summarizes fit measures for the eight models and the saturated model: The Model column contains an arbitrary index number from 1 through 8 for each of the models fitted during the specification search. Sat identifies the saturated model. Looking at the first row, Model 1 has 19 parameters and 2 degrees of freedom. The discrepancy function (which in this case is the likelihood ratio chi-square statistic) is 2.761. Elsewhere in Amos output, the minimum value of the discrepancy function is referred to as CMIN. Here it is labeled C for brevity. To get an explanation of any column of the table, right-click anywhere in the column and choose What’s This? from the pop-up menu. Notice that the best value in each column is underlined, except for the Model and Notes columns. Many familiar fit measures (CFI and RMSEA, for example) are omitted from this table. Appendix E gives a rationale for the choice of fit measures displayed. Viewing Generated Models E You can double-click any row in the table (other than the Sat row) to see the corresponding path diagram in the drawing area. For example, double-click the row for Model 7 to see its path diagram. 325 Specification Search GPA academic 1 error1 height weight attract 1 error2 rating Figure 22-2: Path diagram for Model 7 Viewing Parameter Estimates for a Model E Click on the Specification Search toolbar. E In the Specification Search window, double-click the row for Model 7. The drawing area displays the parameter estimates for Model 7. 12.12 .02 .02 GPA academic 1 error1 1.82 8.43 -6.71 1.44 height .00 19.02 .53 371.48 weight -.47 .14 .00 attract 1 error2 -5.24 1.02 rating .18 Chi-square = 3.071 (4 df) p = .546 Figure 22-3: Parameter estimates for Model 7 326 Example 22 Using BCC to Compare Models E In the Specification Search window, click the column heading BCC0. The table sorts according to BCC so that the best model according to BCC (that is, the model with the smallest BCC) is at the top of the list. Based on a suggestion by Burnham and Anderson (1998), a constant has been added to all the BCC values so that the smallest BCC value is 0. The 0 subscript on BCC0 serves as a reminder of this rescaling. AIC (not shown in the above figure) and BIC have been similarly rescaled. As a rough guideline, Burnham and Anderson (1998, p. 128) suggest the following interpretation of AIC0. BCC0 can be interpreted similarly. AIC0 or BCC0 0–2 2–4 4–7 7 – 10 >10 Burnham and Anderson interpretation There is no credible evidence that the model should be ruled out as being the actual K-L best model for the population of possible samples. (See Burnham and Anderson for the definition of K-L best.) There is weak evidence that the model is not the K-L best model. There is definite evidence that the model is not the K-L best model. There is strong evidence that the model is not the K-L best model. There is very strong evidence that the model is not the K-L best model. Although Model 7 is estimated to be the best model according to Burnham and Anderson’s guidelines, Models 6 and 8 should not be ruled out. 327 Specification Search Viewing the Akaike Weights E Click the Options button on the Specification Search toolbar. E In the Options dialog box, click the Current results tab. E In the BCC, AIC, BIC group, select Akaike weights / Bayes factors (sum = 1). In the table of fit measures, the column that was labeled BCC0 is now labeled BCCp and contains Akaike weights. (See Appendix G.) 328 Example 22 The Akaike weight has been interpreted (Akaike, 1978; Bozdogan, 1987; Burnham and Anderson, 1998) as the likelihood of the model given the data. With this interpretation, the estimated K-L best model (Model 7) is only about 2.4 times more likely (0.494 / 0.205 = 2.41) than Model 6. Bozdogan (1987) points out that, if it is possible to assign prior probabilities to the candidate models, the prior probabilities can be used together with the Akaike weights (interpreted as model likelihoods) to obtain posterior probabilities. With equal prior probabilities, the Akaike weights are themselves posterior probabilities, so that one can say that Model 7 is the K-L best model with probability 0.494, Model 6 is the K-L best model with probability 0.205, and so on. The four most probable models are Models 7, 6, 8, and 1. After adding their probabilities (0.494 + 0.205 + 0.192 + 0.073 = 0.96), one can say that there is a 96% chance that the K-L best model is among those four. (Burnham and Anderson, 1998, pp. 127-129). The p subscript on BCCp serves as a reminder that BCCp can be interpreted as a probability under some circumstances. Using BIC to Compare Models E On the Current results tab of the Options dialog box, select Zero-based (min = 0) in the BCC, AIC, BIC group. 329 Specification Search E In the Specification Search window, click the column heading BIC0. The table is now sorted according to BIC so that the best model according to BIC (that is, the model with the smallest BIC) is at the top of the list. Model 7, with the smallest BIC, is the model with the highest approximate posterior probability (using equal prior probabilities for the models and using a particular prior distribution for the parameters of each separate model). Raftery (1995) suggests the following interpretation of BIC0 values in judging the evidence for Model 7 against a competing model: BIC0 Raftery (1995) interpretation 0–2 2–6 6 – 10 >10 Weak Positive Strong Very strong Using these guidelines, you have positive evidence against Models 6 and 8, and very strong evidence against all of the other models as compared to Model 7. Using Bayes Factors to Compare Models E On the Current results tab of the Options dialog box, select Akaike weights / Bayes factors (sum = 1) in the BCC, AIC, BIC group. 330 Example 22 In the table of fit measures, the column that was labeled BIC0 is now labeled BICp and contains Bayes factors scaled so that they sum to 1. With equal prior probabilities for the models and using a particular prior distribution of the parameters of each separate model (Raftery, 1995; Schwarz, 1978), BICp values are approximate posterior probabilities. Model 7 is the correct model with probability 0.860. One can be 99% sure that the correct model is among Models 7, 6, and 8 (0.860 + 0.069 + 0.065 = 0.99). The p subscript is a reminder that BICp values can be interpreted as probabilities. 331 Specification Search Madigan and Raftery (1994) suggest that only models in Occam’s window be used for purposes of model averaging (a topic not discussed here). The symmetric Occam’s window is the subset of models obtained by excluding models that are much less probable (Madigan and Raftery suggest something like 20 times less probable) than the most probable model. In this example, the symmetric Occam’s window contains models 7, 6, and 8 because these are the models whose probabilities (BICp values) are greater than 0.860 ⁄ 20 = 0.043. Rescaling the Bayes Factors E On the Current results tab of the Options dialog box, select Akaike weights / Bayes factors (max = 1) in the BCC, AIC, BIC group. In the table of fit measures, the column that was labeled BICp is now labeled BICL and contains Bayes factors scaled so that the largest value is 1. This makes it easier to pick out Occam’s window. It consists of models whose BICL values are greater than 1 ⁄ 20 = 0.05; in other words, Models 7, 6, and 8. The L subscript on BICL is a reminder that the analogous statistic BCCL can be interpreted as a likelihood. 332 Example 22 Examining the Short List of Models E Click on the Specification Search toolbar. This displays a short list of models. In the figure below, the short list shows the best model for each number of parameters. It shows the best 16-parameter model, the best 17-parameter model, and so on. Notice that all criteria agree on the best model when the comparison is restricted to models with a fixed number of parameters. The overall best model must be on this list, no matter which criterion is employed. Figure 22-4: The best model for each number of parameters This table shows that the best 17-parameter model fits substantially better than the best 16-parameter model. Beyond 17 parameters, adding additional parameters yields relatively small improvements in fit. In a cost-benefit analysis, stepping from 16 parameters to 17 parameters has a relatively large payoff, while going beyond 17 parameters has a relatively small payoff. This suggests adopting the best 17-parameter model, using a heuristic point of diminishing returns argument. This approach to determining the number of parameters is pursued further later in this example (see “Viewing the Best-Fit Graph for C” on p. 338 and “Viewing the Scree Plot for C” on p. 340). 333 Specification Search Viewing a Scatterplot of Fit and Complexity E Click on the Specification Search toolbar. This opens the Plot window, which displays the following graph: The graph shows a scatterplot of fit (measured by C) versus complexity (measured by the number of parameters) where each point represents a model. The graph portrays the trade-off between fit and complexity that Steiger characterized as follows: In the final analysis, it may be, in a sense, impossible to define one best way to combine measures of complexity and measures of badness-of-fit in a single numerical index, because the precise nature of the best numerical trade-off between complexity and fit is, to some extent, a matter of personal taste. The choice of a model is a classic problem in the two-dimensional analysis of preference. (Steiger, 1990, p. 179.) E Click any of the points in the scatterplot to display a menu that indicates which models are represented by that point and any overlapping points. 334 Example 22 E Choose one of the models from the pop-up menu to see that model highlighted in the table of model fit statistics and, at the same time, to see the path diagram of that model in the drawing area. In the following figure, the cursor points to two overlapping points that represent Model 6 (with a discrepancy of 2.76) and Model 8 (with a discrepancy of 2.90). The graph contains a horizontal line representing points for which C is constant. Initially, the line is centered at 0 on the vertical axis. The Fit values panel at the lower left shows that, for points on the horizontal line, C = 0 and also F = 0. (F is referred to as FMIN in Amos output.) NFI1 and NFI2 are two versions of NFI that use two different baseline models (see Appendix F). Initially, both NFI1 and NFI2 are equal to 1 for points on the horizontal line. The location of the horizontal line is adjustable. You can move the line by dragging it with the mouse. As you move the line, you can see the changes in the location of the line reflected in the fit measures in the lower left panel. 335 Specification Search Adjusting the Line Representing Constant Fit E Move your mouse over the adjustable line. When the pointer changes to a hand, drag the line so that NFI1 is equal to 0.900. (Keep an eye on NFI1 in the lower left panel while you reposition the adjustable line.) NFI1 is the familiar form of the NFI statistic for which the baseline model requires the observed variables to be uncorrelated without constraining their means and variances. Points that are below the line have NFI1 > 0.900 and those above the line have NFI1 < 0.900. That is, the adjustable line separates the acceptable models from the unacceptable ones according to a widely used convention based on a remark by Bentler and Bonett (1980). 336 Example 22 Viewing the Line Representing Constant C – df E In the Plot window, select C – df in the Fit measure group. This displays the following: The scatterplot remains unchanged except for the position of the adjustable line. The adjustable line now contains points for which C – df is constant. Whereas the line was previously horizontal, it is now tilted downward, indicating that C – df gives some weight to complexity in assessing model adequacy. Initially, the adjustable line passes through the point for which C – df is smallest. E Click that point, and then choose Model 7 from the pop-up menu. This highlights Model 7 in the table of fit measures and also displays the path diagram for Model 7 in the drawing area. The panel in the lower left corner shows the value of some fit measures that depend only on C – df and that are therefore, like C – df itself, constant along the adjustable line. CFI1 and CFI2 are two versions of CFI that use two different baseline models (see 337 Specification Search Appendix G). Initially, both CFI1 and CFI2 are equal to 1 for points on the adjustable line. When you move the adjustable line, the fit measures in the lower left panel change to reflect the changing position of the line. Adjusting the Line Representing Constant C – df E Drag the adjustable line so that CFI1 is equal to 0.950. CFI1 is the usual CFI statistic for which the baseline model requires the observed variables to be uncorrelated without constraining their means and variances. Points that are below the line have CFI1 > 0.950 and those above the line have CFI1 < 0.950. That is, the adjustable line separates the acceptable models from the unacceptable ones according to the recommendation of Hu and Bentler (1999). 338 Example 22 Viewing Other Lines Representing Constant Fit E Click AIC, BCC, and BIC in turn. Notice that the slope of the adjustable line becomes increasingly negative. This reflects the fact that the five measures (C, C – df, AIC, BCC, and BIC) give increasing weight to model complexity. For each of these five measures, the adjustable line has constant slope, which you can confirm by dragging the line with the mouse. By contrast, the slope of the adjustable line for C / df is not constant (the slope of the line changes when you drag it with the mouse) and so the slope for C / df cannot be compared to the slopes for C, C – df, AIC, BCC, and BIC. Viewing the Best-Fit Graph for C E In the Plot window, select Best fit in the Plot type group. E In the Fit measure group, select C. Figure 22-5: Smallest value of C for each number of parameters 339 Specification Search Each point in this graph represents a model for which C is less than or equal to that of any other model that has the same number of parameters. The graph shows that the best 16-parameter model has C = 67.342 , the best 17-parameter model has C = 3.071 , and so on. While Best fit is selected, the table of fit measures shows the best model for each number of parameters. This table appeared earlier on p. 332. Notice that the best model for a fixed number of parameters does not depend on the choice of fit measure. For example, Model 7 is the best 17-parameter model according to C – df, and also according to C / df and every other fit measure. This short list of best models is guaranteed to contain the overall best model, no matter which fit measure is used as the criterion for model selection. You can view the short list at any time by clicking . The best-fit graph suggests the choice of 17 as the correct number of parameters on the heuristic grounds that it is the point of diminishing returns. That is, increasing the number of parameters from 16 to 17 buys a comparatively large improvement in C ( 67.342 – 3.071 = 64.271), while increasing the number of parameters beyond 17 yields relatively small improvements. Viewing the Best-Fit Graph for Other Fit Measures E While Best fit is selected, try selecting the other choices in the Fit measure group: C – df, AIC, BCC, BIC, and C / df. For example, if you click BIC, you will see this: 340 Example 22 BIC is the measure among C, C – df, AIC, BCC, and BIC that imposes the greatest penalty for complexity. The high penalty for complexity is reflected in the steep positive slope of the graph as the number of parameters increases beyond 17. The graph makes it clear that, according to BIC, the best 17-parameter model is superior to any other candidate model. Notice that clicking different fit measures changes the vertical axis of the best-fit graph and changes the shape of the configuration of points.1 However, the identity of each point is preserved. The best 16-parameter model is always Model 4, the best 17parameter model is always Model 7, and so on. This is because, for a fixed number of parameters, the rank order of models is the same for every fit measure. Viewing the Scree Plot for C E In the Plot window, select Scree in the Plot type group. 1 The saturated model is missing from the C / df graph because C / df is not defined for the saturated model. 341 Specification Search E In the Fit measure group, select C. The Plot window displays the following graph: Figure 22-6: Scree plot for C In this scree plot, the point with coordinate 17 on the horizontal axis has coordinate 64.271 on the vertical axis. This represents the fact that the best 17-parameter model ( C = 3.071 ) fits better than the best 16-parameter model ( C = 67.342 ), with the difference being 67.342 – 3.071 = 64.271 . Similarly, the height of the graph at 18 parameters shows the improvement in C obtained by moving from the best 17parameter model to the best 18-parameter model, and so on. The point located above 21 on the horizontal axis requires a separate explanation. There is no 20-parameter model with which the best 21-parameter model can be compared. (Actually, there is only one 21-parameter model—the saturated model.) The best 21-parameter model ( C = 0 ) is therefore compared to the best 19-parameter model ( C = 2.761 ). The height of the 21-parameter point is calculated as ( 2.761 – 0 ) ⁄ 2. That is, the improvement in C obtained by moving from the 19-parameter model to the 21parameter model is expressed as the amount of reduction in C per parameter. 342 Example 22 The figure on either p. 338 or p. 341 can be used to support a heuristic point of diminishing returns argument in favor of 17 parameters. There is this difference: In the best-fit graph (p. 338), one looks for an elbow in the graph, or a place where the slope changes from relatively steep to relatively flat. For the present problem, this occurs at 17 parameters, which can be taken as support for the best 17-parameter model. In the scree plot (p. 341), one also looks for an elbow, but the elbow occurs at 18 parameters in this example. This is also taken as support for the best 17-parameter model. In a scree plot, an elbow at k parameters provides support for the best ( k – 1 ) parameter model. The scree plot is so named because of its similarity to the graph known as a scree plot in principal components analysis (Cattell, 1966). In principal components analysis, a scree plot shows the improvement in model fit that is obtained by adding components to the model, one component at a time. The scree plot presented here for SEM shows the improvement in model fit that is obtained by incrementing the number of model parameters. The scree plot for SEM is not identical in all respects to the scree plot for principal components analysis. For example, in principal components, one obtains a sequence of nested models when introducing components one at a time. This is not necessarily the case in the scree plot for SEM. The best 17-parameter model, say, and the best 18-parameter model may or may not be nested. (In the present example, they are.) Furthermore, in principal components, the scree plot is always monotone non-increasing, which is not guaranteed in the case of the scree plot for SEM, even with nested models. Indeed, the scree plot for the present example is not monotone. In spite of the differences between the traditional scree plot and the scree plot presented here, it is proposed that the new scree plot be used in the same heuristic fashion as the traditional one. A two-stage approach to model selection is suggested. In the first stage, the number of parameters is selected by examining either the scree plot or the short list of models. In the second stage, the best model is chosen from among those models that have the number of parameters determined in the first stage. Viewing the Scree Plot for Other Fit Measures E With Scree selected in the Plot type group, select the other choices in the Fit measure group: C – df, AIC, BCC, and BIC (but not C / df). For example, if you select BIC, you will see this: 343 Specification Search For C – df, AIC, BCC, and BIC, the units and the origin of the vertical axis are different than for C, but the graphs are otherwise identical. This means that the final model selected by the scree test is independent of which measure of fit is used (unless C / df is used). This is the advantage of the scree plot over the best-fit plot demonstrated earlier in this example (see “Viewing the Best-Fit Graph for C” on p. 338, and “Viewing the Best-Fit Graph for Other Fit Measures” on p. 339). The best-fit plot and the scree plot contain nearly the same information, but the shape of the best-fit plot depends on the choice of fit measure while the shape of the scree plot does not (with the exception of C / df). Both the best-fit plot and the scree plot are independent of sample size in the sense that altering the sample size without altering the sample moments has no effect other than to rescale the vertical axis. 344 Example 22 Specification Search with Many Optional Arrows The previous specification search was largely confirmatory in that there were only three optional arrows. You can take a much more exploratory approach to constructing a model for the Felson and Bohrnstedt data. Suppose that your only hypothesis about the six measured variables is that academic depends on the other five variables, and attract depends on the other five variables. The path diagram shown in Figure 22-7 with 11 optional arrows implements this hypothesis. It specifies which variables are endogenous, and nothing more. Every observed-variable model that is consistent with the hypothesis is included in the specification search. The covariances among the observed, exogenous variables could have been made optional, but doing so would have increased the number of optional arrows from 11 to 17, increasing the number of candidate models from 2,048 (that is, 211) to 131,072 (that is, 217). Allowing the covariances among the observed, exogenous variables to be optional would have been costly, and there would seem to be little interest in searching for models in which some pairs of those variables are uncorrelated. GPA academic 1 error1 height weight attract 1 error2 rating Figure 22-7: Highly exploratory model for Felson and Bohrnstedt’s girls’ data 345 Specification Search Specifying the Model E Open Ex22b.amw. If you performed a typical installation, the path will be C:\Program Files\IBM\SPSS\Amos\21\Examples\ \Ex22b.amw. Tip: If the last file you opened was in the Examples folder, you can open the file by double-clicking it in the Files list to the left of the drawing area. GPA academic 1 error1 height weight attract 1 error2 rating Making Some Arrows Optional E From the menus, choose Analyze > Specification Search. E Click on the Specification Search toolbar, and then click the arrows in the path diagram until it looks like the diagram on p. 344. Tip: You can change multiple arrows at once by clicking and dragging the mouse pointer through them. Setting Options to Their Defaults E Click the Options button on the Specification Search toolbar. E In the Options dialog box, click the Next search tab. E In the Retain only the best ___ models box, change the value from 0 to 10. 346 Example 22 This restores the default setting we altered earlier in this example. With the default setting, the program displays only the 10 best models according to whichever criterion you use for sorting the columns of the model list. This limitation is desirable now because of the large number of models that will be generated for this specification search. E Click the Current results tab. E In the BCC, AIC, BIC group, select Zero-based (min = 0). Performing the Specification Search E Click on the Specification Search toolbar. The search takes about 10 seconds on a 1.8 GHz Pentium 4. When it finishes, the Specification Search window expands to show the results. 347 Specification Search Using BIC to Compare Models E In the Specification Search window, click the BIC0 column heading. This sorts the table according to BIC0. Figure 22-8: The 10 best models according to BIC0 The sorted table shows that Model 22 is the best model according to BIC0. (Model numbers depend in part on the order in which the objects in the path diagram were drawn; therefore, if you draw your own path diagram, your model numbers may differ from the model numbers here.) The second-best model according to BIC0, namely Model 32, is the best according to BCC0. These models are shown below: GPA academic 1 error1 academic 1 error1 height height weight GPA attract 1 error2 weight rating rating Model 22 Model 32 attract 1 error2 348 Example 22 Viewing the Scree Plot E Click on the Specification Search toolbar. E In the Plot window, select Scree in the Plot type group. The scree plot strongly suggests that models with 15 parameters provide an optimum trade-off of model fit and parsimony. E Click the point with the horizontal coordinate 15. A pop-up appears that indicates the point represents Model 22, for which the change in chi-square is 46.22. E Click 22 (46.22) to display Model 22 in the drawing area. Limitations The specification search procedure is limited to the analysis of data from a single group. Example 23 Exploratory Factor Analysis by Specification Search Introduction This example demonstrates exploratory factor analysis by means of a specification search. In this approach to exploratory factor analysis, any measured variable can (optionally) depend on any factor. A specification search is performed to find the subset of single-headed arrows that provides the optimum combination of simplicity and fit. It also demonstrates a heuristic specification search that is practical for models that are too big for an exhaustive specification search. About the Data This example uses the Holzinger and Swineford girls’ (1939) data from Example 8. About the Model The initial model is shown in Figure 23-1 on p. 350. During the specification search, all single-headed arrows that point from factors to measured variables will be made optional. The purpose of the specification search is to obtain guidance as to which single-headed arrows are essential to the model; in other words, which variables depend on which factors. The two factor variances are both fixed at 1, as are all the regression weights associated with residual variables. Without these constraints, all the models encountered during the specification search would be unidentified. 349 350 Example 23 visperc 1 err_v 1 F1 cubes lozenges paragraph 1 1 1 err_c err_l err_p 1 F2 sentence wordmean 1 1 err_s err_w Figure 23-1: Exploratory factor analysis model with two factors Specifying the Model E Open the file Ex23.amw. If you performed a typical installation, the path will be C:\Program Files\IBM\SPSS\Amos\21\Examples\ \Ex23.amw. Initially, the path diagram appears as in Figure 23-1. There is no point in trying to fit this model as it stands because it is not identified, even with the factor variances fixed at 1. Opening the Specification Search Window E To open the Specification Search window, choose Analyze > Specification Search. Initially, only the toolbar is visible, as seen here: 351 Exploratory Factor Analysis by Specification Search Making All Regression Weights Optional E Click on the Specification Search toolbar, and then click all the single-headed arrows in the path diagram. 1 visperc err_v 1 F1 1 cubes lozenges paragraph 1 1 err_c err_l err_p 1 F2 sentence wordmean 1 1 err_s err_w Figure 23-2: Two-factor model with all regression weights optional During the specification search, the program will attempt to fit the model using every possible subset of the optional arrows. Setting Options to Their Defaults E Click the Options button on the Specification Search toolbar. E In the Options dialog box, click the Current results tab. E Click Reset to ensure that your options are the same as those used in this example. 352 Example 23 E Now click the Next search tab. Notice that the default value for Retain only the best ___ models is 10. 353 Exploratory Factor Analysis by Specification Search With this setting, the program will display only the 10 best models according to whichever criterion you use for sorting the columns of the model list. For example, if you click the column heading C / df, the table will show the 10 models with the smallest values of C / df, sorted according to C / df. Scatterplots will display only the 10 best 1-parameter models, the 10 best 2-parameter models, and so on. It is useful to place a limit on the number of parameters to be displayed when there are a lot of optional parameters. 12 In this example, there are 12 optional parameters so that there are 2 = 4096 candidate models. Storing results for a large number of models can affect performance. Limiting the display to the best 10 models for each number of parameters means that the program has to maintain a list of only about 10 × 13 = 130 models. The program will have to fit many more than 130 models in order to find the best 10 models for each number of parameters, but not quite as many as 4,096. The program uses a branch-andbound algorithm similar to the one used in all-possible-subsets regression (Furnival and Wilson, 1974) to avoid fitting some models unnecessarily. Performing the Specification Search E Click on the Specification Search toolbar. The search takes about 12 seconds on a 1.8 GHz Pentium 4. When it finishes, the Specification Search window expands to show the results. Initially, the list of models is not very informative. The models are listed in the order in which they were encountered, and the models encountered early in the search were found to be unidentified. The method used for classifying models as unidentified is described in Appendix D. 354 Example 23 Using BCC to Compare Models E In the Specification Search window, click the column heading BCC0. The table sorts according to BCC so that the best model according to BCC (that is, the model with the smallest BCC) is at the top of the list. Figure 23-3: The 10 best models according to BCC0 The two best models according to BCC0 (Models 52 and 53) have identical fit measures (out to three decimal places anyway). The explanation for this can be seen from the path diagrams for the two models. E In the Specification Search window, double-click the row for Model 52. This displays its path diagram in the drawing area. 355 Exploratory Factor Analysis by Specification Search E To see the path diagram for Model 53, double-click its row. visperc 1 cubes lozenges paragraph 1 1 1 err_c F1 cubes lozenges err_l paragraph err_p err_v 1 1 1 err_c err_l err_p 1 1 F2 1 1 1 F1 visperc err_v sentence wordmean 1 1 err_s F2 sentence wordmean err_w Model 52 1 1 err_s err_w Model 53 Figure 23-4: Reversing F1 and F2 yields another candidate model This is just one pair of models where reversing the roles of F1 and F2 changes one member of the pair into the other. There are other such pairs. Models 52 and 53 are equivalent, although they are counted separately in the list of 4,096 candidate models. The 10 models in Figure 23-3 on p. 354 come in five pairs, but candidate models do not always come in equivalent pairs, as Figure 23-5 illustrates. The model in that figure does not occur among the 10 best models for six optional parameters and is not identified for that matter, but it does illustrate how reversing F1 and F2 can fail to yield a different member of the set of 4,096 candidate models. visperc 1 err_v 1 F1 cubes lozenges paragraph 1 1 1 err_c err_l err_p 1 F2 sentence wordmean 1 1 err_s err_w Figure 23-5: Reversing F1 and F2 yields the same candidate model 356 Example 23 The occurrence of equivalent candidate models makes it unclear how to apply Bayesian calculations to select a model in this example. Similarly, it is unclear how to use Akaike weights. Furthermore, Burnham and Anderson’s guidelines (see p. 326) for the interpretation of BCC0 are based on reasoning about Akaike weights, so it is not clear whether those guidelines apply in the present example. On the other hand, the use of BCC0 without reference to the Burnham and Anderson guidelines seems unexceptionable. Model 52 (or the equivalent Model 53) is the best model according to BCC0. Although BCC0 chooses the model employed in Example 8, which was based on a model of Jöreskog and Sörbom (1996), it might be noted that Model 62 (or its equivalent, Model 63) is a very close second in terms of BCC0 and is the best model according to some other fit measures. Model 63 has the following path diagram: visperc 1 err_v 1 F1 cubes lozenges paragraph 1 1 1 err_c err_l err_p 1 F2 sentence wordmean 1 1 err_s err_w Figure 23-6: Model 63 The factors, F1 and F2, seem roughly interpretable as spatial ability and verbal ability in both Models 53 and 63. The two models differ in their explanation of scores on the cubes test. In Model 53, cubes scores depend entirely on spatial ability. In Model 63, cubes scores depend on both spatial ability and verbal ability. Since it is a close call in terms of every criterion based on fit and parsimony, it may be especially appropriate here to pay attention to interpretability as a model selection criterion. The scree test in the following step, however, does not equivocate as to which is the best model. 357 Exploratory Factor Analysis by Specification Search Viewing the Scree Plot E Click on the Specification Search toolbar. E In the Plot window, select Scree in the Plot type group. The scree plot strongly suggests the use of 13 parameters because of the way the graph drops abruptly and then levels off immediately after the 13th parameter. Click the point with coordinate 13 on the horizontal axis. A pop-up shows that the point represents Models 52 and 53, as shown in Figure 23-4 on p. 355. Viewing the Short List of Models E Click on the Specification Search toolbar. Take note of the short list of models for future reference. 358 Example 23 Heuristic Specification Search The number of models that must be fitted in an exhaustive specification search grows rapidly with the number of optional arrows. There are 12 optional arrows in Figure 12 23-2 on p. 351 so that an exhaustive specification search requires fitting 2 = 4096 models. (The number of models will be somewhat smaller if you specify a small positive number for Retain only the best___models on the Next search tab of the Options dialog box.) A number of heuristic search procedures have been proposed for reducing the number of models that have to be fitted (Salhi, 1998). None of these is guaranteed to find the best model, but they have the advantage of being computationally feasible in problems with more than, say, 20 optional arrows where an exhaustive specification search is impossible. Amos provides three heuristic search strategies in addition to the option of an exhaustive search. The heuristic strategies do not attempt to find the overall best model because this would require choosing a definition of best in terms of the minimum or maximum of a specific fit measure. Instead, the heuristic strategies attempt to find the 1-parameter model with the smallest discrepancy, the 2-parameter model with the smallest discrepancy, and so on. By adopting this approach, a search procedure can be designed that is independent of the choice of fit measure. You can select among the available search strategies on the Next search tab of the Options dialog box. The choices are as follows: All subsets. An exhaustive search is performed. This is the default. Forward. The program first fits the model with no optional arrows. Then it adds one optional arrow at a time, always adding whichever arrow gives the largest reduction in discrepancy. Backward. The program first fits the model with all optional arrows in the model. Then it removes one optional arrow at a time, always removing whichever arrow gives the smallest increase in discrepancy. Stepwise. The program alternates between Forward and Backward searches, beginning with a Forward search. The program keeps track of the best 1-optionalarrow model encountered, the best 2-optional-arrow model, and so on. After the first Forward search, the Forward and Backward search algorithms are modified by the following rule: The program will add an arrow or remove an arrow only if the resulting model has a smaller discrepancy than any previously encountered model with the same number of arrows. For example, the program will add an arrow to a 5-optional-arrow model only if the resulting 6-optional-arrow model has a smaller discrepancy than any previously encountered 6-optional-arrow model. Forward 359 Exploratory Factor Analysis by Specification Search and Backward searches are alternated until one Forward or Backward search is completed with no improvement. Performing a Stepwise Search E Click the Options button on the Specification Search toolbar. E In the Options dialog box, click the Next search tab. E Select Stepwise. E On the Specification Search toolbar, click . The results in Figure 23-7 suggest examining the 13-parameter model, Model 7. Its discrepancy C is much smaller than the discrepancy for the best 12-parameter model and not much larger than the best 14-parameter model. Model 7 is also best according to both BCC and BIC. (Your results may differ from those in the figure because of an element of randomness in the heuristic specification search algorithms. When adding an arrow during a forward step or removing an arrow during a backward step, there may not be a unique best choice. In that case, one arrow is picked at random from among the arrows that are tied for best.) Figure 23-7: Results of stepwise specification search 360 Example 23 Viewing the Scree Plot E Click on the Specification Search toolbar. E In the Plot window, select Scree in the Plot type group. The scree plot confirms that adding a 13th parameter provides a substantial reduction in discrepancy and that adding additional parameters beyond the 13th provides only slight reductions. Figure 23-8: Scree plot after stepwise specification search E Click the point in the scree plot with horizontal coordinate 13, as in Figure 23-8. The pop-up that appears shows that Model 7 is the best 13-parameter model. E Click 7 (25.62) on the pop-up. This displays the path diagram for Model 7 in the drawing area. Tip: You can also do this by double-clicking the row for Model 7 in the Specification Search window. 361 Exploratory Factor Analysis by Specification Search Limitations of Heuristic Specification Searches A heuristic specification search can fail to find any of the best models for a given number of parameters. In fact, the stepwise search in the present example did fail to find any of the best 11-parameter models. As Figure 23-7 on p. 359 shows, the best 11-parameter model found by the stepwise search had a discrepancy (C) of 97.475. An exhaustive search, however, turns up two models that have a discrepancy of 55.382. For every other number of parameters, the stepwise search did find one of the best models. Of course, it is only when you can perform an exhaustive search to double-check the result of a heuristic search that you can know whether the heuristic search was successful. In those problems where a heuristic search is the only available technique, not only is there no guarantee that it will find one of the best models for each number of parameters, but there is no way to know whether it has succeeded in doing so. Even in those cases where a heuristic search finds one of the best models for a given number of parameters, it does not (as implemented in Amos) give information about other models that fit equally as well or nearly as well. Example 24 Multiple-Group Factor Analysis Introduction This example demonstrates a two-group factor analysis with automatic specification of cross-group constraints. About the Data This example uses the Holzinger and Swineford girls’ and boys’ (1939) data from Examples 12 and 15. Model 24a: Modeling Without Means and Intercepts The presence of means and intercepts as explicit model parameters adds to the complexity of a multiple-group analysis. The treatment of means and intercepts will be postponed until Model 24b. For now, consider fitting the following factor analysis model, with no explicit means and intercepts, to the data of girls and of boys: 363 364 Example 24 1 spatial visperc cubes lozenges 1 verbal paragrap sentence wordmean 1 1 1 1 1 1 err_v err_c err_l err_p err_s err_w Figure 24-1: Two-factor model for girls and boys This is the same two-group factor analysis problem that was considered in Example 12. The results obtained in Example 12 will be obtained here automatically. Specifying the Model E From the menus, choose File > Open. E In the Open dialog box, double-click the file Ex24a.amw. In a typical installation, the path will be: C:\Program Files\IBM\SPSS\Amos\21Examples\ \Ex24a.amw. The path diagram is the same for boys as for girls and is shown in Figure 24-1. Some regression weights are fixed at 1. These regression weights will remain fixed at 1 throughout the analysis to follow. The assisted multiple-group analysis adds constraints to the model you specify but does not remove any constraints. Opening the Multiple-Group Analysis Dialog Box E From the menus, choose Analyze > Multiple-Group Analysis. E Click OK in the message box that appears. This opens the Multiple-Group Analysis dialog box. 365 Multiple-Group Factor Analysis Figure 24-2: The Multiple-Group Analysis dialog box Most of the time, you will simply click OK. This time, however, let's take a look at some parts of the Multiple-Group Analysis dialog box. There are eight columns of check boxes. Check marks appear only in the columns labeled 1, 2, and 3. This means that the program will generate three models, each with a different set of cross-group constraints. Column 1 contains a single check mark in the row labeled Measurement weights, which is short for regression weights in the measurement part of the model. In the case of a factor analysis model, these are the factor loadings. The following section shows you how to view the measurement weights in the path diagram. Column 1 generates a model in which measurement weights are constant across groups (that is, the same for boys as for girls). Column 2 contains check marks for Measurement weights and also Structural covariances, which is short for variances and covariances in the structural part of the model. In a factor analysis model, these are the factor variances and covariances. The following section shows you how to view the structural covariances in the path diagram. Column 2 generates a model in which measurement weights and structural covariances are constant across groups. Column 3 contains all the check marks in column 2 and also a check mark next to Measurement residuals, which is short for variances and covariances of residual (error) variables in the measurement part of the model. The following section shows you how to view the measurement residuals in the path diagram. The three parameter 366 Example 24 subsets that appear in a black (that is, not gray) font are mutually exclusive and exhaustive, so that column 3 generates a model in which all parameters are constant across groups. In summary, columns 1 through 3 generate a hierarchy of models in which each model contains all the constraints of its predecessor. First, the factor loadings are held constant across groups. Then, the factor variances and covariances are held constant. Finally, the residual (unique) variances are held constant. Viewing the Parameter Subsets E In the Multiple-Group Analysis dialog box, click Measurement weights. The measurement weights are now displayed in color in the drawing area. If there is a check mark next to Alternative to color on the Accessibility tab of the Interface Properties dialog box, the measurement weights will also display as thick lines, as shown here: 1 spatial visperc cubes lozenges 1 verbal paragrap sentence wordmean 1 1 1 1 1 1 err_v err_c err_l err_p err_s err_w E Click Structural covariances to see the factor variances and covariances emphasized. E Click Measurement residuals to see the error variables emphasized. This is an easy way to visualize which parameters are affected by each cross-group constraint. 367 Multiple-Group Factor Analysis Viewing the Generated Models E In the Multiple-Group Analysis dialog box, click OK. The path diagram now shows names for all parameters. In the panel at the left of the path diagram, you can see that the program has generated three new models in addition to an Unconstrained model in which there are no cross-group constraints at all. Figure 24-3: Amos Graphics window after automatic constraints E Double-click XX: Measurement weights. This opens the Manage Models dialog box, which shows you the constraints that require the factor loadings to be constant across groups. 368 Example 24 Fitting All the Models and Viewing the Output E From the menus, choose Analyze > Calculate Estimates to fit all models. E From the menus, choose View > Text Output. E In the navigation tree of the output viewer, click the Model Fit node to expand it, and then click CMIN. The CMIN table shows the likelihood ratio chi-square statistic for each fitted model. The data do not depart significantly from any of the models. Furthermore, at each step up the hierarchy from the Unconstrained model to the Measurement residuals model, the increase in chi-square is never much larger than the increase in degrees of freedom. There appears to be no significant evidence that girls’ parameter values differ from boys’ parameter values. 369 Multiple-Group Factor Analysis Here is the CMIN table: Model NPAR CMIN DF P CMIN/DF Unconstrained Measurement weights Structural covariances Measurement residuals Saturated model Independence model 26 22 19 13 42 12 16.48 18.29 22.04 26.02 0.00 337.55 16 20 23 29 0 30 0.42 0.57 0.52 0.62 1.03 0.91 0.96 0.90 0.00 11.25 E In the navigation tree, click AIC under the Model Fit node. AIC and BCC values indicate that the best trade-off of model fit and parsimony is obtained by constraining all parameters to be equal across groups (the Measurement residuals model). Here is the AIC table: Model AIC BCC Unconstrained Measurement weights Structural covariances Measurement residuals Saturated model Independence model 68.48 62.29 60.04 52.02 84.00 361.55 74.12 67.07 64.16 54.84 93.12 364.16 BIC CAIC Customizing the Analysis There were two opportunities to override the automatically generated cross-group constraints. In Figure 24-2 on p. 365, you could have changed the check marks in columns 1, 2, and 3, and you could have generated additional models by placing check marks in columns 4 through 8. Then, in Figure 24-3 on p. 367, you could have renamed or modified any of the automatically generated models listed in the panel at the left of the path diagram. 370 Example 24 Model 24b: Comparing Factor Means Introducing explicit means and intercepts into a model raises additional questions about which cross-group parameter constraints should be tested, and in what order. This example shows how Amos constrains means and intercepts while fitting the factor analysis model in Figure 24-1 on p. 364 to data from separate groups of girls and boys. This is the same two-group factor analysis problem that was considered in Example 15. The results in Example 15 will be obtained here automatically. Specifying the Model E From the menus, choose File > Open. E In the Open dialog box, double-click the file Ex24b.amw. In a typical installation, the path will be: C:\Program Files\IBM\SPSS\Amos\21\Examples\ \Ex24b.amw. The path diagram is the same for boys as for girls and is shown below. Some regression weights are fixed at 1. The means of all the unobserved variables are fixed at 0. In the following section, you will remove the constraints on the girls’ factor means. The other constraints (the ones that you do not remove) will remain in effect throughout the analysis. 0, 1 spatial visperc cubes lozenges 0, verbal 1 paragrap sentence wordmean 1 1 1 1 1 1 0, err_v 0, err_c 0, err_l 0, err_p 0, err_s 0, err_w Figure 24-4: Two-factor model with explicit means and intercepts 371 Multiple-Group Factor Analysis Removing Constraints Initially, the factor means are fixed at 0 for both boys and girls. It is not possible to estimate factor means for both groups. However, Sörbom (1974) showed that, by fixing the factor means of a single group to constant values and placing suitable constraints on the regression weights and intercepts in a factor model, it is possible to obtain meaningful estimates of the factor means for all of the other groups. In the present example, this means picking one group, say boys, and fixing their factor means to a constant, say 0, and then removing the constraints on the factor means of the remaining group, the girls. The constraints on regression weights and intercepts required by Sörbom’s approach will be generated automatically by Amos. The boys’ factor means are already fixed at 0. To remove the constraints on the girls' factor means, do the following: E In the drawing area of the Amos Graphics window, right-click Spatial and choose Object Properties from the pop-up menu. E In the Object Properties dialog box, click the Parameters tab. E Select the 0 in the Mean box, and press the Delete key. E With the Object Properties dialog box still open, click Verbal in the drawing area. This displays the properties for the verbal factor in the Object Properties dialog box. E In the Mean box on the Parameters tab, select the 0 and press the Delete key. E Close the Object Properties dialog box. 372 Example 24 Now that the constraints on the girls’ factor means have been removed, the girls’ and boys’ path diagrams look like this: 1 spatial visperc lozenges verbal 0, err_v 0, cubes 1 1 paragrap 1 1 1 0, err_c spatial sentence wordmean 1 cubes 0, err_l lozenges 0, err_p 0, 1 visperc 1 1 paragrap 0, err_s verbal sentence 0, err_w Girls wordmean 1 1 1 1 1 1 0, err_v 0, err_c 0, err_l 0, err_p 0, err_s 0, err_w Boys Tip: To switch between path diagrams in the drawing area, click either Boys or Girls in the List of Groups pane to the left. Generating the Cross-Group Constraints E From the menus, choose Analyze > Multiple-Group Analysis. E Click OK in the message box that appears. This opens the Multiple-Group Analysis dialog box. 373 Multiple-Group Factor Analysis The default settings, as shown above, will generate the following nested hierarchy of five models: Model Model 1 (column 1) Model 2 (column 2) Model 3 (column 3) Model 4 (column 4) Model 5 (column 5) Constraints Measurement weights (factor loadings) are equal across groups. All of the above, and measurement intercepts (intercepts in the equations for predicting measured variables) are equal across groups. All of the above, and structural means (factor means) are equal across groups. All of the above, and structural covariances (factor variances and covariances) are equal across groups. All parameters are equal across groups. E Click OK. Fitting the Models E From the menus, choose Analyze > Calculate Estimates. The panel at the left of the path diagram shows that two models could not be fitted to the data. The two models that could not be fitted, the Unconstrained model with no 374 Example 24 cross-group constraints, and the Measurement weights model with factor loadings held equal across groups, are unidentified. Viewing the Output E From the menus, choose View > Text Output. E In the navigation tree of the output viewer, expand the Model Fit node. Some fit measures for the four automatically generated and identified models are shown here, along with fit measures for the saturated and independence models. E Click CMIN under the Model Fit node. The CMIN table shows that none of the generated models can be rejected when tested against the saturated model. Model NPAR CMIN DF P CMIN/DF Measurement intercepts Structural means Structural covariances Measurement residuals Saturated model Independence model 30 28 25 19 54 24 22.593 30.624 34.381 38.459 0.00 337.553 24 26 29 35 0 30 0.544 0.243 0.226 0.316 0.941 1.178 1.186 1.099 0.00 11.252 On the other hand, the change in chi-square ( 30.62 – 22.59 = 8.03) when introducing the equal-factor-means constraint looks large compared to the change in degrees of freedom ( 26 – 24 = 2). E In the navigation tree, click the Model Comparison node. 375 Multiple-Group Factor Analysis Assuming model Measurement intercepts to be correct, the following table shows that this chi-square difference is significant: NFI Delta-1 Model DF CMIN P Structural means Structural covariances Measurement residuals 2 5 11 8.030 11.787 15.865 0.018 0.024 0.038 0.035 0.146 0.047 IFI Delta-2 RFI rho-1 TLI rho2 0.026 0.038 0.051 0.021 0.022 0.014 0.023 0.024 0.015 In the preceding two tables, two chi-square statistics and their associated degrees of 2 freedom are especially important. The first, χ = 22.59 with df = 24 , allowed accepting the hypothesis of equal intercepts and equal regression weights in the measurement model. It was important to establish the credibility of this hypothesis because, without equal intercepts and equal regression weights, it would be unclear that the factors have the same meaning for boys as for girls and so there would be no 2 interest in comparing their means. The other important chi-square statistic, χ = 8.03 with df = 2 , leads to rejection of the hypothesis that boys and girls have the same factor means. Group differences between the boys’ and girls’ factor means can be determined from the girls’ estimates in the Measurement intercepts model. E Select the Measurement intercepts model in the pane at the lower left of the output viewer. E In the navigation tree, click Estimates, then Scalars, and then Means. The boys’ means were fixed at 0, so only the girls’ means were estimated, as shown in the following table: spatial verbal Estimate S.E. C.R. P Label –1.066 0.956 0.881 0.521 –1.209 1.836 0.226 m1_1 0.066 m2_1 These estimates were discussed in Model A of Example 15, which is identical to the present Measurement intercepts model. (Model B of Example 15 is identical to the present Structural means model.) Example 25 Multiple-Group Analysis Introduction This example shows you how to automatically implement Sörbom’s alternative to analysis of covariance. Example 16 demonstrates the benefits of Sörbom’s approach to analysis of covariance with latent variables. Unfortunately, as Example 16 also showed, the Sörbom approach is difficult to apply, involving many steps. This example automatically obtains the same results as Example 16. About the Data The Olsson (1973) data from Example 16 will be used here. The sample moments can be found in the workbook UserGuide.xls. Sample moments from the experimental group are in the worksheet Olss_exp. Sample moments from the control group are in the worksheet Olss_cnt. About the Model The model was described in Example 16. The Sörbom method requires that the experimental and the control group have the same path diagram. 377 378 Example 25 0, eps2 1 1 pre_syn 0, 0, eps1 pre_opp 1 0, eps3 eps4 1 1 post_syn post_opp 1 pre_verbal post_verbal 1 0, zeta Figure 25-1: Sörbom model for Olsson data Specifying the Model E Open Ex25.amw. If you performed a typical installation, the path will be C:\Program Files\IBM\SPSS\Amos\21\Examples\ \Ex25.amw. The path diagram is the same for the control and experimental groups and is shown in Figure 25-1. Some regression weights are fixed at 1. The means of all the residual (error) variable means are fixed at 0. These constraints will remain in effect throughout the analysis. Constraining the Latent Variable Means and Intercepts The model in Figure 25-1, Sörbom’s model for Olsson data, is unidentified and will remain unidentified for every set of cross-group constraints that Amos automatically generates. For every set of cross-group constraints, the mean of pre_verbal and the intercept in the equation for predicting post_verbal will be unidentified. In order to allow the model to be identified for at least some cross-group constraints, it is necessary to pick one group, such as the control group, and fix the pre_verbal mean and the post_verbal intercept to a constant, such as 0. E In the List of Groups pane to the left of the path diagram, ensure that Control is selected. This indicates that the path diagram for the control group is displayed in the drawing area. 379 Multiple-Group Analysis E In the drawing area, right-click pre_verbal and choose Object Properties from the pop- up menu. E In the Object Properties dialog box, click the Parameters tab. E In the Mean text box, type 0. E With the Object Properties dialog box still open, click post_verbal in the drawing area. E In the Intercept text box of the Object Properties dialog box, type 0. E Close the Object Properties dialog box. Now, the path diagram for the control group appears as follows: 0, eps2 1 1 pre_syn 0, 0, eps1 pre_opp 1 0, eps3 eps4 1 1 post_syn post_opp 1 pre_verbal post_verbal 0, 0 1 0, zeta The path diagram for the experimental group continues to look like Figure 25-1. Generating Cross-Group Constraints E From the menus, choose Analyze > Multiple-Group Analysis. E Click OK in the message box that appears. The Multiple-Group Analysis dialog box appears. 380 Example 25 E Click OK to generate the following nested hierarchy of eight models: Model Model 1 (column 1) Model 2 (column 2) Model 3 (column 3) Model 4 (column 4) Model 5 (column 5) Model 6 (column 6) Model 7 (column 7) Model 8 (column 8) Constraints Measurement weights (factor loadings) are constant across groups. All of the above, and measurement intercepts (intercepts in the equations for predicting measured variables) are constant across groups. All of the above, and the structural weight (the regression weight for predicting post_verbal) is constant across groups. All of the above, and the structural intercept (the intercept in the equation for predicting post_verbal) is constant across groups. All of the above, and the structural mean (the mean of pre_verbal) is constant across groups. All of the above, and the structural covariance (the variance of pre_verbal) is constant across groups. All of the above, and the structural residual (the variance of zeta) is constant across groups. All parameters are constant across groups. 381 Multiple-Group Analysis Fitting the Models E From the menus, choose Analyze > Calculate Estimates. The panel to the left of the path diagram shows that two models could not be fitted to the data. The two models that could not be fitted, the Unconstrained model and the Measurement weights model, are unidentified. Viewing the Text Output E From the menus, choose View > Text Output. E In the navigation tree of the output viewer, expand the Model Fit node, and click CMIN. This displays some fit measures for the seven automatically generated and identified models, along with fit measures for the saturated and independence models, as shown in the following CMIN table: Model NPAR CMIN DF P CMIN/DF Measurement intercepts Structural weights Structural intercepts Structural means Structural covariances Structural residuals Measurement residuals Saturated model Independence model 22 21 20 19 18 17 13 28 16 34.775 36.340 84.060 94.970 99.976 112.143 122.366 0.000 682.638 6 7 8 9 10 11 15 0 12 0.000 0.000 0.000 0.000 0.000 0.000 0.000 5.796 5.191 10.507 10.552 9.998 10.195 8.158 0.000 56.887 382 Example 25 There are many chi-square statistics in this table, but only two of them matter. The Sörbom procedure comes down to two basic questions. First, does the Structural weights model fit? This model specifies that the regression weight for predicting post_verbal from pre_verbal be constant across groups. If the Structural weights model is accepted, one follows up by asking whether the next model up the hierarchy, the Structural intercepts model, fits significantly worse. On the other hand, if the Structural weights model has to be rejected, one never gets to the question about the Structural intercepts model. Unfortunately, that is the case here. 2 The Structural weights model, with χ = 36.34 and df = 7 , is rejected at any conventional significance level. Examining the Modification Indices To see if it is possible to improve the fit of the Structural weights model: E Close the output viewer. E From the Amos Graphics menus, choose View > Analysis Properties. E Click the Output tab and select the Modification Indices check box. E Close the Analysis Properties dialog box. E From the menus, choose Analyze > Calculate Estimates to fit all models. Only the modification indices for the Structural weights model need to be examined because this is the only model whose fit is essential to the analysis. E From the menus, choose View > Text Output, select Modification Indices in the navigation tree of the output viewer, then select Structural weights in the lower left panel. E Expand the Modification Indices node and select Covariances. As you can see in the following covariance table for the control group, only one modification index exceeds the default threshold of 4: M.I. eps2 <--> eps4 4.553 Par Change 2.073 383 Multiple-Group Analysis E Now click experimental in the panel on the left. As you can see in the following covariance table for the experimental group, there are four modification indices greater than 4: eps2 <--> eps4 eps2 <--> eps3 eps1 <--> eps4 eps1 <--> eps3 M.I. Par Change 9.314 9.393 8.513 6.192 4.417 –4.117 –3.947 3.110 Of these, only two modifications have an obvious theoretical justification: allowing eps2 to correlate with eps4, and allowing eps1 to correlate with eps3. Between these two, allowing eps2 to correlate with eps4 has the larger modification index. Thus the modification indices from the control group and the experimental group both suggest allowing eps2 to correlate with eps4. Modifying the Model and Repeating the Analysis E Close the output viewer. E From the menus, choose Diagram > Draw Covariances. E Click and drag to draw a double-headed arrow between eps2 and eps4. E From the menus, choose Analyze > Multiple-Group Analysis, and click OK in the message box that appears. E In the Multiple-Group Analysis dialog box, click OK. E From the menus, choose Analyze > Calculate Estimates to fit all models. E From the menus, choose View > Text Output. E Use the navigation tree to view the fit measures for the Structural weights model. With the additional double-headed arrow connecting eps2 and eps4, the Structural 2 weights model has an adequate fit ( χ = 3.98 with df = 5 ), as shown in the following CMIN table: 384 Example 25 Model NPAR CMIN DF P CMIN/DF Measurement intercepts Structural weights Structural intercepts Structural means Structural covariances Structural residuals Measurement residuals Saturated model Independence model 24 23 22 21 20 19 14 28 16 2.797 3.976 55.094 63.792 69.494 83.194 93.197 0.000 682.638 4 5 6 7 8 9 14 0 12 0.59 0.55 0.00 0.00 0.00 0.00 0.00 0.699 0.795 9.182 9.113 8.687 9.244 6.657 0.00 56.887 Now that the Structural weights model fits the data, it can be asked whether the Structural intercepts model fits significantly worse. Assuming the Structural weights model to be correct: Model DF CMIN P NFI Delta-1 IFI Delta-2 RFI rho-1 TLI rho2 Structural intercepts Structural means Structural covariances Structural residuals Measurement residuals 1 2 3 4 9 51.118 59.816 65.518 79.218 89.221 0.000 0.000 0.000 0.000 0.000 0.075 0.088 0.096 0.116 0.131 0.075 0.088 0.097 0.117 0.132 0.147 0.146 0.139 0.149 0.103 0.150 0.149 0.141 0.151 0.105 The Structural intercepts model does fit significantly worse than the Structural weights model. When the intercept in the equation for predicting post_verbal is required to be constant across groups, the chi-square statistic increases by 51.12 while degrees of freedom increases by only 1. That is, the intercept for the experimental group differs significantly from the intercept for the control group. The intercept for the experimental group is estimated to be 3.627. post_verbal pre_syn pre_opp post_syn post_opp Estimate S.E. C.R. P Label 3.627 18.619 19.910 20.383 21.204 0.478 0.594 0.541 0.535 0.531 7.591 31.355 36.781 38.066 39.908 <0.001 <0.001 <0.001 <0.001 <0.001 j1_2 i1_1 i2_1 i3_1 i4_1 Recalling that the intercept for the control group was fixed at 0, it is estimated that the treatment increases post_verbal scores by 3.63 with pre_verbal held constant. The results obtained in the present example are identical to the results of Example 16. The Structural weights model is the same as Model D in Example 16. The Structural intercepts model is the same as Model E in Example 16. Example 26 Bayesian Estimation Introduction This example demonstrates Bayesian estimation using Amos. Bayesian Estimation In maximum likelihood estimation and hypothesis testing, the true values of the model parameters are viewed as fixed but unknown, and the estimates of those parameters from a given sample are viewed as random but known. An alternative kind of statistical inference, called the Bayesian approach, views any quantity that is unknown as a random variable and assigns it a probability distribution. From a Bayesian standpoint, true model parameters are unknown and therefore considered to be random, and they are assigned a joint probability distribution. This distribution is not meant to suggest that the parameters are varying or changing in some fashion. Rather, the distribution is intended to summarize our state of knowledge, or what is currently known about the parameters. The distribution of the parameters before the data are seen is called a prior distribution. Once the data are observed, the evidence provided by the data is combined with the prior distribution by a well-known formula called Bayes’ Theorem. The result is an updated distribution for the parameters, called a posterior distribution, which reflects a combination of prior belief and empirical evidence (Bolstad, 2004). Human beings tend to have difficulty visualizing and interpreting the joint posterior distribution for the parameters of a model. Therefore, when performing a Bayesian analysis, one needs summaries of the posterior distribution that are easy to 385 386 Example 26 interpret. A good way to start is to plot the marginal posterior density for each parameter, one at a time. Often, especially with large data samples, the marginal posterior distributions for parameters tend to resemble normal distributions. The mean of a marginal posterior distribution, called a posterior mean, can be reported as a parameter estimate. The posterior standard deviation, the standard deviation of the distribution, is a useful measure of uncertainty similar to a conventional standard error. The analogue of a confidence interval may be computed from the percentiles of the marginal posterior distribution; the interval that runs from the 2.5 percentile to the 97.5 percentile forms a Bayesian 95% credible interval. If the marginal posterior distribution is approximately normal, the 95% credible interval will be approximately equal to the posterior mean ± 1.96 posterior standard deviations. In that case, the credible interval becomes essentially identical to an ordinary confidence interval that assumes a normal sampling distribution for the parameter estimate. If the posterior distribution is not normal, the interval will not be symmetric about the posterior mean. In that case, the Bayesian version often has better properties than the conventional one. Unlike a conventional confidence interval, the Bayesian credible interval is interpreted as a probability statement about the parameter itself; Prob ( a ≤θ ≤b ) = 0.95 ) literally means that you are 95% sure that the true value of θ lies between a and b. Tail areas from a marginal posterior distribution can even be used as a kind of Bayesian p value for hypothesis testing. If 96.5% of the area under the marginal posterior density for θ lies to the right of some value a, then the Bayesian p value for testing the null hypothesis θ ≤a against the alternative hypothesis θ > a is 0.045. In that case, one would actually say, I’m 96.5% sure that the alternative hypothesis is true. Although the idea of Bayesian inference dates back to the late 18th century, its use by statisticians has been rare until recently. For some, reluctance to apply Bayesian methods stems from a philosophical distaste for viewing probability as a state of belief and from the inherent subjectivity in choosing prior distributions. But for the most part, Bayesian analyses have been rare because computational methods for summarizing joint posterior distributions have been difficult or unavailable. Using a new class of simulation techniques called Markov chain Monte Carlo (MCMC), however, it is now possible to draw random values of parameters from high-dimensional joint posterior distributions, even in complex problems. With MCMC, obtaining posterior summaries becomes as simple as plotting histograms and computing sample means and percentiles. 387 Bayesian Estimation Selecting Priors A prior distribution quantifies the researcher’s belief concerning where the unknown parameter may lie. Knowledge of how a variable is distributed in the population can sometimes be used to help researchers select reasonable priors for parameters of interest. Hox (2002) cites the example of a normed intelligence test with a mean of 100 units and a standard deviation of 15 units in the general population. If the test is given to participants in a study who are fairly representative of the general population, then it would be reasonable to center the prior distributions for the mean and standard deviation of the test score at 100 and 15, respectively. Knowing that an observed variable is bounded may help us to place bounds on the parameters. For instance, the mean of a Likert-type survey item taking values 0, 1, …, 10 must lie between 0 and 10, and its maximum variance is 25. Prior distributions for the mean and variance of this item can be specified to enforce these bounds. In many cases, one would like to specify prior distribution that introduces as little information as possible, so that the data may be allowed to speak for themselves. A prior distribution is said to be diffuse if it spreads its probability over a very wide range of parameter values. By default, Amos applies a uniform distribution from – 38 38 – 3.4 × 10 to 3.4 × 10 to each parameter. Diffuse prior distributions are often said to be non-informative, and we will use that term as well. In a strict sense, however, no prior distribution is ever completely noninformative, not even a uniform distribution over the entire range of allowable values, because it would cease to be uniform if the parameter were transformed. (Suppose, for example, that the variance of a variable is uniformly distributed from 0 to ∞ ; then the standard deviation will not be uniformly distributed.) Every prior distribution carries with it at least some information. As the size of a dataset grows, the evidence from the data eventually swamps this information, and the influence of the prior distribution diminishes. Unless your sample is unusually small or if your model and/or prior distribution are strongly contradicted by the data, you will find that the answers from a Bayesian analysis tend to change very little if the prior is changed. Amos makes it easy for you to change the prior distribution for any parameter, so you can easily perform this kind of sensitivity check. 388 Example 26 Performing Bayesian Estimation Using Amos Graphics To illustrate Bayesian estimation using Amos Graphics, we revisit Example 3, which shows how to test the null hypothesis that the covariance between two variables is 0 by fixing the value of the covariance between age and vocabulary to 0. Estimating the Covariance The first thing we need to do for the present example is to remove the zero constraint on the covariance so that the covariance can be estimated. E Open Ex03.amw. If you performed a typical installation, the path will be C:\Program Files\IBM\SPSS\Amos\21\Examples\ . E Right-click the double-headed arrow in the path diagram and choose Object Properties from the pop-up menu. E In the Object Properties dialog box, click the Parameters tab. E Delete the 0 in the Covariance text box. E Close the Object Properties dialog box. 389 Bayesian Estimation This is the resulting path diagram (you can also find it in Ex26.amw): Results of Maximum Likelihood Analysis Before performing a Bayesian analysis of this model, we perform a maximum likelihood analysis for comparison purposes. E From the menus, choose Analyze > Calculate Estimates to display the following parameter estimates and standard errors: Covariances: (Group number 1 - Default model) age <--> vocabulary Estimate –5.014 S.E. 8.560 C.R. –0.586 P 0.558 Label C.R. 4.416 4.416 P *** *** Label Variances: (Group number 1 - Default model) age vocabulary Estimate 21.574 131.294 S.E. 4.886 29.732 390 Example 26 Bayesian Analysis Bayesian analysis requires estimation of explicit means and intercepts. Before performing any Bayesian analysis in Amos, you must first tell Amos to estimate means and intercepts. E From the menus, choose View > Analysis Properties. E Select Estimate means and intercepts. (A check mark will appear next to it.) E To perform a Bayesian analysis, from the menus, choose Analyze > Bayesian Estimation, or press the keyboard combination Ctrl+B. 391 Bayesian Estimation The Bayesian SEM window appears, and the MCMC algorithm immediately begins generating samples. The Bayesian SEM window has a toolbar near the top of the window and has a results summary table below. Each row of the summary table describes the marginal posterior distribution of a single model parameter. The first column, labeled Mean, contains the posterior mean, which is the center or average of the posterior distribution. This can be used as a Bayesian point estimate of the parameter, based on the data and the prior distribution. With a large dataset, the posterior mean will tend to be close to the maximum likelihood estimate. (In this case, the two are somewhat close; compare the posterior mean of –6.536 for the age-vocabulary covariance to the maximum likelihood estimate of –5.014 reported earlier.) 392 Example 26 Replicating Bayesian Analysis and Data Imputation Results The multiple imputation and Bayesian estimation algorithms implemented in Amos make extensive use of a stream of random numbers that depends on an initial random number seed. The default behavior of Amos is to change the random number seed every time you perform Bayesian estimation, Bayesian data imputation, or stochastic regression data imputation. Consequently, when you try to replicate one of those analyses, you can expect to get slightly different results because of using a different random number seed. If, for any reason, you need an exact replication of an earlier analysis, you can do so by starting with the same random number seed that was used in the earlier analysis. Examining the Current Seed To find out what the current random number seed is or to change its value: E From the menus, choose Tools > Seed Manager. By default, Amos increments the current random number seed by one for each invocation of a simulation method that makes use of random numbers (either Bayesian SEM, stochastic regression data imputation, or Bayesian data imputation). Amos 393 Bayesian Estimation maintains a log of previous seeds used, so it is possible to match the file creation dates of previously generated analysis results or imputed datasets with the dates reported in the Seed Manager. Changing the Current Seed E Click Change and enter a previously used seed before performing an analysis. Amos will use the same stream of random numbers that it used the last time it started out with that seed. For example, we used the Seed Manager to discover that Amos used a seed of 14942405 when the analysis for this example was performed. To generate the same Bayesian analysis results as we did: E Click Change and change the current seed to 14942405. The following figure shows the Seed Manager dialog box after making the change: A more proactive approach is to select a fixed seed value prior to running a Bayesian or data imputation analysis. You can have Amos use the same seed value for all analyses if you select the Always use the same seed option. 394 Example 26 Record the value of this seed in a safe place so that you can replicate the results of your analysis at a later date. Tip: We use the same seed value of 14942405 for all examples in this guide so that you can reproduce our results. We mentioned earlier that the MCMC algorithm used by Amos draws random values of parameters from high-dimensional joint posterior distributions via Monte Carlo simulation of the posterior distribution of parameters. For instance, the value reported in the Mean column is not the exact posterior mean but is an estimate obtained by averaging across the random samples produced by the MCMC procedure. It is important to have at least a rough idea of how much uncertainty in the posterior mean is attributable to Monte Carlo sampling. The second column, labeled S.E., reports an estimated standard error that suggests how far the Monte-Carlo estimated posterior mean may lie from the true posterior mean. As the MCMC procedure continues to generate more samples, the estimate of the posterior mean becomes more precise, and the S.E. gradually drops. Note that this S.E. is not an estimate of how far the posterior mean may lie from the unknown true value of the parameter. That is, one would not use ± 2 S.E. values as the width of a 95% interval for the parameter. 395 Bayesian Estimation The likely distance between the posterior mean and the unknown true parameter is reported in the third column, labeled S.D., and that number is analogous to the standard error in maximum likelihood estimation. Additional columns contain the convergence statistic (C.S.), the median value of each parameter, the lower and upper 50% boundaries of the distribution of each parameter, and the skewness, kurtosis, minimum value, and maximum value of each parameter. The lower and upper 50% boundaries are the endpoints of a 50% Bayesian credible set, which is the Bayesian analogue of a 50% confidence interval. Most of us are accustomed to using a confidence level of 95%, so we will soon show you how to change to 95%. When you choose Analyze → Bayesian Estimation, the MCMC algorithm begins sampling immediately, and it continues until you click the Pause Sampling button to halt the process. In the figure on p. 391, sampling was halted after 500 + 5831 = 6331 completed samples. Amos generated and discarded 500 burn-in samples prior to drawing the first sample that was retained for the analysis. Amos draws burn-in samples to allow the MCMC procedure to converge to the true joint posterior distribution. After Amos draws and discards the burn-in samples, it draws additional samples to give us a clear picture of what this joint posterior distribution looks like. In the example shown on p. 391, Amos has drawn 5,831 of these analysis samples, and it is upon these analysis samples that the results in the summary table are based. Actually, the displayed results are for 500 burn-in and 5,500 analysis samples. Because the sampling algorithm Amos uses is very fast, updating the summary table after each sample would lead to a rapid, incomprehensible blur of changing results in the Bayesian SEM window. It would also slow the analysis down. To avoid both problems, Amos refreshes the results after every 1,000 samples. Changing the Refresh Options To change the refresh interval: E From the menus, choose View > Options. E Click the Refresh tab in the Options dialog box to show the refresh options. 396 Example 26 You can change the refresh interval to something other than the default of 1,000 observations. Alternatively, you can refresh the display at a regular time interval that you specify. If you select Refresh the display manually, the display will never be updated automatically. Regardless of what you select on the Refresh tab, you can refresh the display manually at any time by clicking the Refresh button on the Bayesian SEM toolbar. Assessing Convergence Are there enough samples to yield stable estimates of the parameters? Before addressing this question, let us briefly discuss what it means for the procedure to have converged. Convergence of an MCMC algorithm is quite different from convergence of a nonrandom method such as maximum likelihood. To properly understand MCMC convergence, we need to distinguish two different types. The first type, which we may call convergence in distribution, means that the analysis samples are, in fact, being drawn from the actual joint posterior distribution of the parameters. Convergence in distribution takes place in the burn-in period, during which the algorithm gradually forgets its initial starting values. Because these samples may not be representative of the actual posterior distribution, they are discarded. The default burn-in period of 500 is quite conservative, much longer than needed for most problems. Once the burn-in period is over and Amos begins to collect the analysis 397 Bayesian Estimation samples, one may ask whether there are enough of these samples to accurately estimate the summary statistics, such as the posterior mean. That question pertains to the second type of convergence, which we may call convergence of posterior summaries. Convergence of posterior summaries is complicated by the fact that the analysis samples are not independent but are actually an autocorrelated time series. The 1001th sample is correlated with the 1000th, which, in turn, is correlated with the 999th, and so on. These correlations are an inherent feature of MCMC, and because of these correlations, the summary statistics from 5,500 (or whatever number of) analysis samples have more variability than they would if the 5,500 samples had been independent. Nevertheless, as we continue to accumulate more and more analysis samples, the posterior summaries gradually stabilize. Amos provides several diagnostics that help you check convergence. Notice the value 1.0083 on the toolbar of the Bayesian SEM window on p. 391. This is an overall convergence statistic based on a measure suggested by Gelman, Carlin, Stern, and Rubin (2004). Each time the screen refreshes, Amos updates the C.S. for each parameter in the summary table; the C.S. value on the toolbar is the largest of the individual C.S. values. By default, Amos judges the procedure to have converged if the largest of the C.S. values is less than 1.002. By this standard, the maximum C.S. of 1.0083 is not small enough. Amos displays an unhappy face when the overall C.S. is not small enough. The C.S. compares the variability within parts of the analysis sample to the variability across these parts. A value of 1.000 represents perfect convergence, and larger values indicate that the posterior summaries can be made more precise by creating more analysis samples. Clicking the Pause Sampling button a second time instructs Amos to resume the sampling process. You can also pause and resume sampling by choosing Pause Sampling from the Analyze menu, or by using the keyboard combination Ctrl+E. The next figure shows the results after resuming the sampling for a while and pausing again. 398 Example 26 At this point, we have 22,501 analysis samples, although the display was most recently updated at the 22,500th sample. The largest C.S. is 1.0012, which is below the 1.002 criterion that indicates acceptable convergence. Reflecting the satisfactory convergence, Amos now displays a happy face . Gelman et al. (2004) suggest that, for many analyses, values of 1.10 or smaller are sufficient. The default criterion of 1.002 is conservative. Judging that the MCMC chain has converged by this criterion does not mean that the summary table will stop changing. The summary table will continue to change as long as the MCMC algorithm keeps running. As the overall C.S. value on the toolbar approaches 1.000, however, there is not much more precision to be gained by taking additional samples, so we might as well stop. Diagnostic Plots In addition to the C.S. value, Amos offers several plots that can help you check convergence of the Bayesian MCMC method. To view these plots: E From the menus, choose View > Posterior. Amos displays the Posterior dialog box. 399 Bayesian Estimation E Select the age< - >vocabulary parameter from the Bayesian SEM window. 400 Example 26 The Posterior dialog box now displays a frequency polygon of the distribution of the age-vocabulary covariance across the 22,500 samples. One visual aid you can use to judge whether it is likely that Amos has converged to the posterior distribution is a simultaneous display of two estimates of the distribution, one obtained from the first third of the accumulated samples and another obtained from the last third. To display the two estimates of the marginal posterior on the same graph: E Select First and last. (A check mark will appear next to the option.) 401 Bayesian Estimation In this example, the distributions of the first and last thirds of the analysis samples are almost identical, which suggests that Amos has successfully identified the important features of the posterior distribution of the age-vocabulary covariance. Note that this posterior distribution appears to be centered at some value near –6, which agrees with the Mean value for this parameter. Visual inspection suggests that the standard deviation is roughly 10, which agrees with the value of S.D. Notice that more than half of the sampled values are to the left of 0. This provides mild evidence that the true value of the covariance parameter is negative, but this result is not statistically significant because the proportion to the right of 0 is still quite large. If the proportion of sampled values to the right of 0 were very small—for example, less than 5%—then we would be able to reject the null hypothesis that the covariance parameter is greater than or equal to 0. In this case, however, we cannot. Another plot that helps in assessing convergence is the trace plot. The trace plot, sometimes called a time-series plot, shows the sampled values of a parameter over time. This plot helps you to judge how quickly the MCMC procedure converges in distribution—that is, how quickly it forgets its starting values. 402 Example 26 E To view the trace plot, select Trace. The plot shown here is quite ideal. It exhibits rapid up-and-down variation with no long-term trends or drifts. If we were to mentally break up this plot into a few horizontal sections, the trace within any section would not look much different from the trace in any other section. This indicates that the convergence in distribution takes place rapidly. Long-term trends or drifts in the plot indicate slower convergence. (Note that long-term is relative to the horizontal scale of this plot, which depends on the number of samples. As we take more samples, the trace plot gets squeezed together like an accordion, and slow drifts or trends eventually begin to look like rapid up-and-down variation.) The rapid up-and-down motion means that the sampled value at any iteration is unrelated to the sampled value k iterations later, for values of k that are small relative to the total number of samples. To see how long it takes for the correlations among the samples to die down, we can examine a third plot, called an autocorrelation plot. This plot displays the estimated correlation between the sampled value at any iteration and the sampled value k iterations later for k = 1, 2, 3,…. 403 Bayesian Estimation E To display this plot, select Autocorrelation. Lag, along the horizontal axis, refers to the spacing at which the correlation is estimated. In ordinary situations, we expect the autocorrelation coefficients to die down and become close to 0, and remain near 0, beyond a certain lag. In the autocorrelation plot shown above, the lag-10 correlation—the correlation between any sampled value and the value drawn 10 iterations later—is approximately 0.50. The lag-35 correlation lies below 0.20, and at lag 90 and beyond, the correlation is effectively 0. This indicates that by 90 iterations, the MCMC procedure has essentially forgotten its starting position, at least as far as this covariance parameter is concerned. Forgetting the starting position is equivalent to convergence in distribution. If we were to examine the autocorrelation plots for the other parameters in the model, we would find that they also effectively die down to 0 by 90 or so iterations. This fact gives us confidence that a burn-in period of 500 samples was more than enough to ensure that convergence in distribution was attained, and that the analysis samples are indeed samples from the true posterior distribution. In certain pathological situations, the MCMC procedure may converge very slowly or not at all. This may happen in data sets with high proportions of missing values, 404 Example 26 when the missing values fall in a peculiar pattern, or in models with some parameters that are poorly estimated. If this should happen, the trace plots for one or more parameters in the model will have long-term drifts or trends that do not diminish as more and more samples are taken. Even as the trace plot gets squeezed together like an accordion, the drifts and trends will not go away. In that case, you will probably see that the range of sampled values for the parameter (as indicated by the vertical scale of the trace plot, or by the S.D. or the difference between Min and Max in the Bayesian SEM window) is huge. The autocorrelations may remain high for large lags or may appear to oscillate between positive and negative values for a long time. When this happens, it suggests that the model is too complicated to be supported by the data at hand, and we ought to consider either fitting a simpler model or introducing information about the parameters by specifying a more informative prior distribution. Bivariate Marginal Posterior Plots The summary table in the Bayesian SEM window and the frequency polygon in each Posterior dialog box describe the marginal posterior distributions of the estimands, one at a time. The marginal posterior distributions are very important, but they do not reveal relationships that may exist among the estimands. For example, two covariances or regression coefficients may share significance in the sense that either one could plausibly be 0, but both cannot. To help us visualize the relationships among pairs of estimands, Amos provides bivariate marginal posterior plots. E To display the marginal posterior of two parameters, begin by displaying the posterior distribution of one of the parameters (for example, the variance of age). E Hold down the control (Ctrl) key on the keyboard and select the second parameter in the summary table (for example, the variance of vocabulary). Amos then displays a three-dimensional surface plot of the marginal posterior distribution of the variances of age and vocabulary. 405 Bayesian Estimation E Select Histogram to display a similar plot using vertical blocks. E Select Contour to display a two-dimensional plot of the bivariate posterior density. 406 Example 26 Ranging from dark to light, the three shades of gray represent 50%, 90%, and 95% credible regions, respectively. A credible region is conceptually similar to a bivariate confidence region that is familiar to most data analysts acquainted with classical statistical inference methods. 407 Bayesian Estimation Credible Intervals Recall that the summary table in the Bayesian SEM window displays the lower and upper endpoints of a Bayesian credible interval for each estimand. By default, Amos presents a 50% interval, which is similar to a conventional 50% confidence interval. Researchers often report 95% confidence intervals, so you may want to change the boundaries to correspond to a posterior probability content of 95%. Changing the Confidence Level E Click the Display tab in the Options dialog box. E Type 95 as the Confidence level value. E Click the Close button. Amos now displays 95% credible intervals. 408 Example 26 Learning More about Bayesian Estimation Gill (2004) provides a readable overview of Bayesian estimation and its advantages in a special issue of Political Analysis. Jackman (2000) offers a more technical treatment of the topic, with examples, in a journal article format. The book by Gelman, Carlin, Stern, and Rubin (2004) addresses a multitude of practical issues with numerous examples. Example 27 Bayesian Estimation Using a Non-Diffuse Prior Distribution Introduction This example demonstrates using a non-diffuse prior distribution. About the Example Example 26 showed how to perform Bayesian estimation for a simple model with the uniform prior distribution that Amos uses by default. In the present example, we consider a more complex model and make use of a non-diffuse prior distribution. In particular, the example shows how to specify a prior distribution so that we avoid negative variance estimates and other improper estimates. More about Bayesian Estimation In the discussion of the previous example, we noted that Bayesian estimation depends on information supplied by the analyst in conjunction with data. Whereas maximum likelihood estimation maximizes the likelihood of an unknown parameter θ when given the observed data y through the relationship L(θ|y) ∝ p(y|θ), Bayesian estimation approximates the posterior density of y, p(θ|y) ∝p(θ)L(θ|y), where p(θ) is the prior distribution of θ, and p(θ|y) is the posterior density of θ given y. Conceptually, this means that the posterior density of y given θ is the product of the prior distribution of θ and the likelihood of the observed data (Jackman, 2000, p. 377). 409 410 Example 27 As the sample size increases, the likelihood function becomes more and more tightly concentrated about the ML estimate. In that case, a diffuse prior tends to be nearly flat or constant over the region where the likelihood is high; the shape of the posterior distribution is largely determined by the likelihood, that is by the data themselves. Under a uniform prior distribution for θ, p(θ) is completely flat, and the posterior distribution is simply a re-normalized version of the likelihood. Even under a nonuniform prior distribution, the influence of the prior distribution diminishes as the sample size increases. Moreover, as the sample size increases, the joint posterior distribution for θ comes to resemble a normal distribution. For this reason, Bayesian and classical maximum likelihood analyses yield equivalent asymptotic results (Jackman, 2000). In smaller samples, if you can supply sensible prior information to the Bayesian procedure, the parameter estimates from a Bayesian analysis can be more precise. (The other side of the coin is that a bad prior can do harm by introducing bias.) Bayesian Analysis and Improper Solutions One familiar problem in the fitting of latent variable models is the occurrence of improper solutions (Chen, Bollen, Paxton, Curran, and Kirby, 2001). An improper solution occurs, for example, when a variance estimate is negative. Such a solution is called improper because it is impossible for a variance to be less than 0. An improper solution may indicate that the sample is too small or that the model is wrong. Bayesian estimation cannot help with a bad model, but it can be used to avoid improper solutions that result from the use of small samples. Martin and McDonald (1975), discussing Bayesian estimation for exploratory factor analysis, suggested that estimates can be improved and improper solutions can be avoided by choosing a prior distribution that assigns zero probability to improper solutions. The present example demonstrates Martin and McDonald’s approach to avoiding improper solutions by a suitable choice of prior distribution. About the Data Jamison and Scogin (1995) conducted an experimental study of the effectiveness of a new treatment for depression in which participants were asked to read and complete the homework exercises in Feeling Good: The New Mood Therapy (Burns, 1999). Jamison and Scogin randomly assigned participants to a control condition or an 411 Bayesian Estimation Using a Non-Diffuse Prior Distribution experimental condition, measured their levels of depression, treated the experimental group, and then re-measured participants’ depression. The researchers did not rely on a single measure of depression. Instead, they used two well-known depression scales, the Beck Depression Inventory (Beck, 1967) and the Hamilton Rating Scale for Depression (Hamilton, 1960). We will call them BDI and HRSD for short. The data are in the file feelinggood.sav. Fitting a Model by Maximum Likelihood The following figure shows the results of using maximum likelihood estimation to fit a model for the effect of treatment (COND) on depression at Time 2. Depression at Time 1 is used as a covariate. At Time 1 and then again at Time 2, BDI and HRSD are modeled as indicators of a single underlying variable, depression (DEPR). The path diagram for this model is in Ex27.amw. The chi-square statistic of 0.059 with one degree of freedom indicates a good fit, but the negative residual variance for posttherapy HRSD makes the solution improper. 412 Example 27 Bayesian Estimation with a Non-Informative (Diffuse) Prior Does a Bayesian analysis with a diffuse prior distribution yield results similar to those of the maximum likelihood solution? To find out, we will do a Bayesian analysis of the same model. First, we will show how to increase the number of burn-in observations. This is just to show you how to do it. Nothing suggests that the default of 500 burn-in observations needs to be changed. Changing the Number of Burn-In Observations To change the number of burn-in observations to 1,000: E From the menus, choose View > Options. E In the Options dialog box, select the MCMC tab. E Change Number of burn-in observations to 1000. E Click Close and allow MCMC sampling to proceed until the unhappy face happy . turns 413 Bayesian Estimation Using a Non-Diffuse Prior Distribution The summary table should look something like this: 414 Example 27 In this analysis, we allowed Amos to reach its default limit of 100,000 MCMC samples. When Amos reaches this limit, it begins a process known as thinning. Thinning involves retaining an equally-spaced subset of samples rather than all samples. Amos begins the MCMC sampling process by retaining all samples until the limit of 100,000 samples is reached. At that point, if the data analyst has not halted the sampling process, Amos discards half of the samples by removing every alternate one, so that the lag-1 dependence in the remaining sequence is the same as the lag-2 dependence of the original unthinned sequence. From that point, Amos continues the sampling process, keeping one sample out of every two that are generated, until the upper limit of 100,000 is again reached. At that point, Amos thins the sample a second time and begins keeping one new sample out of every four...and so on. Why does Amos perform thinning? Thinning reduces the autocorrelation between successive samples, so a thinned sequence of 100,000 samples provides more information than an unthinned sequence of the same length. In the current example, the displayed results are based on 53,000 samples that were collected after 1,000 burn-in samples, for a total of 54,000 samples. However, this is after the sequence of samples has been thinned three times, so that eight samples had to be generated for every one that was kept. If thinning had not been performed, there would have been 1, 000 × 8 = 8, 000 burn-in samples and53, 000 × 8 = 424, 000 analysis samples. The results of the Bayesian analysis are very similar to the maximum likelihood results. The posterior Mean for the residual variance of e5 is negative, just as the maximum likelihood estimate is. The posterior distribution itself lies largely to the left of 0. 415 Bayesian Estimation Using a Non-Diffuse Prior Distribution Fortunately, there is a remedy for this problem: Assign a prior density of 0 to any parameter vector for which the variance of e5 is negative. To change the prior distribution of the variance of e5: E From the menus, choose View > Prior. Alternatively, click the Prior button on the Bayesian SEM toolbar, or enter the keyboard combination Ctrl+R. Amos displays the Prior dialog box. 416 Example 27 E Select the variance of e5 in the Bayesian SEM window to display the default prior distribution for e5. E Replace the default lower bound of – 3.4 × 10 – 38 with 0. 417 Bayesian Estimation Using a Non-Diffuse Prior Distribution E Click Apply to save this change. Amos immediately discards the accumulated MCMC samples and begins sampling all over again. After a while, the Bayesian SEM window should look something like this: 418 Example 27 The posterior mean of the variance of e5 is now positive. Examining its posterior distribution confirms that no sampled values fall below 0. 419 Bayesian Estimation Using a Non-Diffuse Prior Distribution Is this solution proper? The posterior mean of each variance is positive, but a glance at the Min column shows that some of the sampled values for the variance of e2 and the variance of e3 are negative. To avoid negative variances for e2 and e3, we can modify their prior distributions just as we did for e5. It is not too difficult to impose such constraints on a parameter-by-parameter basis in small models like this one. However, there is also a way to automatically set the prior density to 0 for any parameter values that are improper. To use this feature: 420 Example 27 E From the menus, choose View > Options. E In the Options dialog box, click the Prior tab. E Select Admissibility test. (A check mark will appear next to it.) Selecting Admissibility test sets the prior density to 0 for parameter values that result in a model where any covariance matrix fails to be positive definite. In particular, the prior density is set to 0 for non-positive variances. Amos also provides a stability test option that works much like the admissibility test option. Selecting Stability test sets the prior density to 0 for parameter values that result in an unstable system of linear equations. As soon as you select Admissibility test, the MCMC sampling starts all over, discarding any previously accumulated samples. After a short time, the results should look something like this: 421 Bayesian Estimation Using a Non-Diffuse Prior Distribution Notice that the analysis took only 73,000 observations to meet the convergence criterion for all estimands. Minimum values for all estimated variances are now positive. Example 28 Bayesian Estimation of Values Other Than Model Parameters Introduction This example shows how to estimate other quantities besides model parameters in a Bayesian analyses. About the Example Examples 26 and 27 demonstrated Bayesian analysis. In both of those examples, we were concerned exclusively with estimating model parameters. We may also be interested in estimating other quantities that are functions of the model parameters. For instance, one of the most common uses of structural equation modeling is the simultaneous estimation of direct and indirect effects. In this example, we demonstrate how to estimate the posterior distribution of an indirect effect. The Wheaton Data Revisited In Example 6, we profiled the Wheaton et al. (1977) alienation data and described three alternative models for the data. Here, we re-examine Model C from Example 6. The following path diagram is in the file Ex28.amw: 423 424 Example 28 Indirect Effects Suppose we are interested in the indirect effect of ses on 71_alienation through the mediation of 67_alienation. In other words, we suspect that socioeconomic status exerts an impact on alienation in 1967, which in turn influences alienation in 1971. 425 Bayesian Estimation of Values Other Than Model Parameters Estimating Indirect Effects E Before starting the Bayesian analysis, from the menus in Amos Graphics, choose View > Analysis Properties. E In the Analysis Properties dialog box, click the Output tab. E Select Indirect, direct & total effects and Standardized estimates to estimate standardized indirect effects. (A check mark will appear next to these options.) E Close the Analysis Properties dialog box. 426 Example 28 E From the menus, choose Analyze > Calculate Estimates to obtain the maximum likelihood chi-square test of model fit and the parameter estimates. The results are identical to those shown in Example 6, Model C. The standardized direct effect of ses on 71_alienation is –0.19. The standardized indirect effect of ses on 71_alienation is defined as the product of two standardized direct effects: the standardized direct effect of ses on 67_alienation (–0.56) and the standardized direct effect of 67_alienation on 71_alienation (0.58). The product of these two standardized direct effects is – 0.56 × 0.58 = – 0.32 . 427 Bayesian Estimation of Values Other Than Model Parameters You do not have to work the standardized indirect effect out by hand. To view all the standardized indirect effects: E From the menus, choose View > Text Output. E In the upper left corner of the Amos Output window, select Estimates, then Matrices, and then Standardized Indirect Effects. Bayesian Analysis of Model C To begin Bayesian estimation for Model C: E From the menus, choose Analyze > Bayesian Estimation. 428 Example 28 The MCMC algorithm converges quite rapidly within 22,000 MCMC samples. Additional Estimands The summary table displays results for model parameters only. To estimate the posterior of quantities derived from the model parameters, such as indirect effects: E From the menus, choose View > Additional Estimands. 429 Bayesian Estimation of Values Other Than Model Parameters Estimating the marginal posterior distribution of the additional estimands may take a while. A status window keeps you informed of progress. Results are displayed in the Additional Estimands window. To display the posterior mean for each standardized indirect effect: E Select Standardized Indirect Effects and Mean in the panel at the left side of the window. 430 Example 28 E To print the results, select the items you want to print. (A check mark will appear next to them). E From the menus, choose File > Print. Be careful because it is possible to generate a lot of printed output. If you put a check mark in every check box in this example, the program will print 1 × 8 × 11 = 88 matrices. E To view the posterior means of the standardized direct effects, select Standardized Direct Effects and Mean in the panel at the left. The posterior means of the standardized direct and indirect effects of socioeconomic status on alienation in 1971 are almost identical to the maximum likelihood estimates. 431 Bayesian Estimation of Values Other Than Model Parameters Inferences about Indirect Effects There are two methods for finding a confidence interval for an indirect effect or for testing an indirect effect for significance. Sobel (1982, 1986) gives a method that assumes that the indirect effect is normally distributed. A growing body of statistical simulation literature calls into question this assumption, however, and advocates the use of the bootstrap to construct better, typically asymmetric, confidence intervals (MacKinnon, Lockwood, and Williams, 2004; Shrout and Bolger, 2002). These studies have found that the bias-corrected bootstrap confidence intervals available in Amos produce reliable inferences for indirect effects. As an alternative to the Sobel method and the bootstrap for finding confidence intervals, Amos can provide (typically asymmetric) credible intervals for standardized or unstandardized indirect effects. The next figure shows the lower boundary of a 95% credible interval for each standardized indirect effect in the model. Notice that 95% Lower bound is selected in the panel at the left of the Additional Estimands window. (You can specify a value other than 95% in the Bayesian Sem Options dialog box.) 432 Example 28 The lower boundary of the 95% credible interval for the indirect effect of socioeconomic status on alienation in 1971 is –0.382. The corresponding upper boundary value is –0.270, as shown below: We are now 95% certain that the true value of this standardized indirect effect lies between –0.382 and –0.270. To view the posterior distribution: E From the menus in the Additional Estimands window, choose View > Posterior. At first, Amos displays an empty posterior window. 433 Bayesian Estimation of Values Other Than Model Parameters E Select Mean and Standardized Indirect Effects in the Additional Estimands window. 434 Example 28 Amos then displays the posterior distribution of the indirect effect of socioeconomic status on alienation in 1971. The distribution of the indirect effect is approximately, but not exactly, normal. 435 Bayesian Estimation of Values Other Than Model Parameters The skewness of the mean of the indirect effect values is –0.13; the kurtosis is 0.02. These values indicate very mild non-normality of the distribution of the mean indirect effect values. Example 29 Estimating a User-Defined Quantity in Bayesian SEM Introduction This example shows how to estimate a user-defined quantity: in this case, the difference between a direct effect and an indirect effect. About the Example In the previous example, we showed how to use the Additional Estimands feature of Amos Bayesian analysis to estimate an indirect effect. Suppose you wanted to carry the analysis a step further and address a commonly asked research question: How does an indirect effect compare to the corresponding direct effect? The Stability of Alienation Model You can use the Custom Estimands feature of Amos to estimate and draw inferences about an arbitrary function of the model parameters. To illustrate the Custom Estimands feature, let us revisit the previous example. The path diagram for the model is shown on p. 438 and can be found in the file Ex29.amw. The model allows socioeconomic status to exert a direct effect on alienation experienced in 1971. It also allows an indirect effect that is mediated by alienation experienced in 1967. The remainder of this example focuses on the direct effect, the indirect effect, and a comparison of the two. Notice that we supplied parameter labels for the direct effect 437 438 Example 29 (“c”) and the two components of the indirect effect (“a” and “b”). Although not required, parameter labels make it easier to specify custom estimands. To begin a Bayesian analysis of this model: E From the menus, choose Analyze > Bayesian Estimation. After a while, the Bayesian SEM window should look something like this: 439 Estimating a User-Defined Quantity in Bayesian SEM 440 Example 29 E From the menus, choose View > Additional Estimands. E In the Additional Estimands window, select Standardized Direct Effects and Mean. The posterior mean for the direct effect of ses on 71_alienation is –0.195. 441 Estimating a User-Defined Quantity in Bayesian SEM E Select Standardized Indirect Effects and Mean. The indirect effect of socioeconomic status on alienation in 1971 is –0.320. 442 Example 29 The posterior distribution of the indirect effect lies entirely to the left of 0, so we are practically certain that the indirect effect is less than 0. You can also display the posterior distribution of the direct effect. The program does not, however, have any built-in way to examine the posterior distribution of the difference between the indirect effect and the direct effect (or perhaps their ratio). This is a case of wanting to estimate and draw inferences about a quantity that the developers of the program did not anticipate. For this, you need to extend the capabilities of Amos by defining your own custom estimand. 443 Estimating a User-Defined Quantity in Bayesian SEM Numeric Custom Estimands In this section, we show how to write a Visual Basic program for estimating the numeric difference between a direct effect and an indirect effect. (You can use C# instead of Visual Basic.) The final Visual Basic program is in the file Ex29.vb. The first step in writing a program to define a custom estimand is to open the custom estimands window. E From the menus on the Bayesian SEM window, choose View > Custom estimands. This window displays a skeleton Visual Basic program to which we will add lines to define the new quantities that we want Amos to estimate. Note: If you want to use C# instead of Visual Basic, from the menus, choose File > New C# plug-in. 444 Example 29 The skeleton program contains a subroutine and a function. You have no control over when the subroutine and the function are called. They are called by Amos. Amos calls your DeclareEstimands subroutine once to find out how many new quantities (estimands) you want to estimate and what you want to call them. Amos calls your CalculateEstimands function repeatedly. Each time your CalculateEstimands function is called, Amos has to calculate the value of your custom estimands for a given set of parameter values. Only the first line of the DeclareEstimands subroutine is shown initially. E To display all of the lines, double-click Sub DeclareEstimands or click the + sign in the little box at the beginning of the line. You need to replace the placeholder ‘TODO: Your code goes here with lines that specify how many new quantities you want to estimate and what you want to call them. For this example, we want to estimate the difference between the direct effect of ses on 71_alienation and the corresponding indirect effect. We will also write code for 445 Estimating a User-Defined Quantity in Bayesian SEM computing the direct effect and the indirect individually, but this is only to show how to do it. The direct effect and the indirect effect individually can be estimated without defining them as custom estimands. To define each estimand, we use the keyword newestimand, as shown below: The words “direct”, “indirect”, and “difference” are estimand labels. You can use different labels. The function CalculateEstimands computes the values of the estimands defined in the DeclareEstimands subroutine. Only the first line of the function is shown. E To display all of the lines, double-click Function CalculateEstimands or click the + sign in the little box at the beginning of the line. 446 Example 29 The placeholder ‘TODO: Your code goes here needs to be replaced with lines for evaluating the estimands called “direct”, “indirect” and “difference”. We start by writing Visual Basic code for computing the direct effect. In the following figure, we have already typed part of a Visual Basic statement: estimand(“direct”) .value =. 447 Estimating a User-Defined Quantity in Bayesian SEM We need to finish the statement by adding additional code to the right of the equals (=) sign, describing how to compute the direct effect. The direct effect is to be calculated for a set of parameter values that are accessible through the AmosEngine object that is supplied as an argument to the CalculateEstimands function. Unless you are an expert Amos programmer, you would not know how to use the AmosEngine object; however, there is an easy way to get the needed Visual Basic syntax by dragging and dropping. Dragging and Dropping E Find the direct effect in the Bayesian SEM window and click to select its row. (Its row is highlighted in the following figure.) E Move the mouse pointer to an edge of the selected row. Either the top edge or the bottom edge will do. 448 Example 29 Tip: When you get the mouse pointer on the right spot, a plus (+) symbol will appear next to the mouse pointer. E Hold down the left mouse button, drag the mouse pointer into the Visual Basic window to the spot where you want the expression for the direct effect to go, and release the mouse button. When you complete this operation, Amos fills in the appropriate parameter expression, as shown in the next figure: 449 Estimating a User-Defined Quantity in Bayesian SEM The parameter on the right side of the equation is identified by the label (“c”) that was used in the path diagram shown earlier. We next turn our attention to calculating the indirect effect of socioeconomic status on alienation in 1971. This indirect effect is defined as the product of its two direct effects, the direct effect of socioeconomic status on alienation in 1967 (parameter a) and the direct effect of alienation in 1967 on alienation in 1971 (parameter b). E On the left side of the Visual Basic assignment statement for computing the indirect effect, type estimand(“indirect”) .value =. 450 Example 29 Using the same drag-and-drop process as previously described, start dragging things from the Bayesian SEM window to the Unnamed.vb window. E First, drag the direct effect of socioeconomic status on alienation in 1967 to the right side of the equals sign in the unfinished statement. 451 Estimating a User-Defined Quantity in Bayesian SEM E Next, drag and drop the direct effect of 1967 alienation on 1971alienation. This second direct effect appears in the Unnamed.vb window as sem.ParameterValue(“b”). 452 Example 29 E Finally, use the keyboard to insert an asterisk (*) between the two parameter values. 453 Estimating a User-Defined Quantity in Bayesian SEM Hint: For complicated custom estimands, you can also drag and drop from the Additional Estimands window to the Custom Estimands window. To compute the difference between the direct and indirect effects, add a third line of Visual Basic syntax, as seen in the following figure: 454 Example 29 E To find the posterior distribution of all three custom estimands, click Run. The results will take a few seconds. A status window keeps you informed of progress. 455 Estimating a User-Defined Quantity in Bayesian SEM The marginal posterior distributions of the three custom estimands are summarized in the following table: The results for direct can also be found in the Bayesian SEM summary table, and the results for indirect can be found in the Additional Estimands table. We are really interested in difference. Its posterior mean is –0.132. Its minimum is –0.412, and its maximum is 0.111. E To see its marginal posterior, from the menus, choose View > Posterior. E Select the difference row in the Custom Estimands table. 456 Example 29 Most of the area lies to the left of 0, meaning that the difference is almost sure to be negative. In other words, it is almost certain that the indirect effect is more negative than the direct effect. Eyeballing the posterior, perhaps 95% or so of the area lies to the left of 0, so there is about a 95% chance that the indirect effect is larger than the direct effect. It is not necessary to rely on eyeballing the posterior, however. There is a way to find any area under a marginal posterior or, more generally, to estimate the probability that any proposition about the parameters is true. 457 Estimating a User-Defined Quantity in Bayesian SEM Dichotomous Custom Estimands Visual inspection of the frequency polygon reveals that the majority of difference values are negative, but it does not tell us exactly what proportion of values are negative. That proportion is our estimate of the probability that the indirect effect exceeds the direct effect. To estimate probabilities like these, we can use dichotomous estimands. In Visual Basic (or C#) programs, dichotomous estimands are just like numeric estimands except that dichotomous estimands take on only two values: true and false. In order to estimate the probability that the indirect effect is more negative than the direct effect, we need to define a function of the model parameters that is true when the indirect effect is more negative than the direct effect and is false otherwise. Defining a Dichotomous Estimand E Name each dichotomous estimand in the DeclareEstimands subroutine. For purposes of illustration, we will declare two dichotomous estimands, calling them “indirect is less than zero” and “indirect is smaller than direct”. 458 Example 29 E Add lines to the CalculateEstimates function specifying how to compute them. In this example, the first dichotomous custom estimand is true when the value of the indirect effect is less than 0. The second dichotomous custom estimand is true when the indirect effect is smaller than the direct effect. E Click the Run button. Amos evaluates the truth of each logical expression for each MCMC sample drawn. When the analysis finishes, Amos reports the proportion of MCMC samples in which each expression was found to be true. These proportions appear in the Dichotomous Estimands section of the Custom Estimands summary table. 459 Estimating a User-Defined Quantity in Bayesian SEM The P column shows the proportion of times that each evaluated expression was true in the whole series of MCMC samples. In this example, the number of MCMC samples was 29,501, so P is based on approximately 30,000 samples. The P1, P2, and P3 columns show the proportion of times each logical expression was true in the first third, the middle third, and the final third of the MCMC samples. In this illustration, each of these proportions is based upon approximately 10,000 MCMC samples. Based on the proportions in the Dichotomous Estimands area of the Custom Estimands window, we can say with near certainty that the indirect effect is negative. This is consistent with the frequency polygon on p. 442 that showed no MCMC samples with an indirect effect value greater than or equal to 0. Similarly, the probability is about 0.975 that the indirect effect is larger (more negative) than the direct effect. The 0.975 is only an estimate of the probability. It is a proportion based on 29,501 correlated observations. However it appears to be a good estimate because the proportions from the first third (0.974), middle third (0.979) and final third (0.971) are so close together. Example 30 Data Imputation Introduction This example demonstrates multiple imputation in a factor analysis model. About the Example Example 17 showed how to fit a model using maximum likelihood when the data contain missing values. Amos can also impute values for those that are missing. In data imputation, each missing value is replaced by some numeric guess. Once each missing value has been replaced by an imputed value, the resulting completed dataset can be analyzed by data analysis methods that are designed for complete data. Amos provides three methods of data imputation. In regression imputation, the model is first fitted using maximum likelihood. After that, model parameters are set equal to their maximum likelihood estimates, and linear regression is used to predict the unobserved values for each case as a linear combination of the observed values for that same case. Predicted values are then plugged in for the missing values. Stochastic regression imputation (Little and Rubin, 2002) imputes values for each case by drawing, at random, from the conditional distribution of the missing values given the observed values, with the unknown model parameters set equal to their maximum likelihood estimates. Because of the random element in stochastic regression imputation, repeating the imputation process many times will produce a different completed dataset each time. 461 462 Example 30 Bayesian imputation is like stochastic regression imputation except that it takes into account the fact that the parameter values are only estimated and not known. Multiple Imputation In multiple imputation (Schafer, 1997), a nondeterministic imputation method (either stochastic regression imputation or Bayesian imputation) is used to create multiple completed datasets. While the observed values never change, the imputed values vary from one completed dataset to the next. Once the completed datasets have been created, each completed dataset is analyzed alone. For example, if there are m completed datasets, then there will be m separate sets of results, each containing estimates of various quantities along with estimated standard errors. Because the m completed datasets are different from each other, the m sets of results will also differ from one to the next. After each of the m completed datasets has been analyzed alone, the data analyst has m sets of estimates and standard errors that must be combined into a single set of results. Well-known formulas attributed to Rubin (1987) are available for combining the results from multiple completed datasets. Those formulas will be used in Example 31. Model-Based Imputation In this example, imputation is performed using a factor analysis model. Model-based imputation has two advantages. First, you can impute values for any latent variables in the model. Second, if the model is correct and has positive degrees of freedom, the implied covariance matrix and implied means will be estimated more accurately than with a saturated model. (Imputation is based on the implied covariance matrix and means.) However, a saturated model like the model in Example 1 can be used for imputation when no other model is appropriate. Performing Multiple Data Imputation Using Amos Graphics For this example, we will perform Bayesian multiple imputation using the confirmatory factor analysis model from Example 17. The dataset is the incomplete Holzinger and Swineford (1939) dataset in the file grant_x.sav. The imputation of missing values is only the first step in obtaining useful results from multiple imputation. Eventually, all three of the following steps need to be carried out. 463 Data Imputation Step 1: Use the Data Imputation feature of Amos to create m complete data files. Step 2: Perform an analysis of each of the m completed data files separately. Performing this analysis is up to you. You can perform the analysis in Amos but, typically, you would use some other program. For purposes of this example and the next, we will use SPSS Statistics to carry out a regression analysis in which one variable (sentence) is used to predict another variable (wordmean). Specifically, we will focus on the estimation of the regression weight and its standard error. Step 3: Combine the results from the analyses of the m data files. This example covers the first step. Steps 2 and 3 will be covered in Example 31. E To generate the completed data files, open the Amos Graphics file Ex30.amw. 464 Example 30 E From the menus, choose Analyze > Data Imputation. Amos displays the Amos Data Imputation window. E Make sure that Bayesian imputation is selected. E Set Number of completed datasets to 10. (This sets m = 10.) You might suppose that a large number of completed data files are needed. It turns out that, in most applications, very few completed data files are needed. Five to 10 completed data files are generally sufficient to obtain accurate parameter estimates and standard errors (Rubin, 1987). There is no penalty for using more than 10 imputations except for the clerical effort involved in Steps 2 and 3. Amos can save the completed datasets in a single file (Single output file) with the completed datasets stacked, or it can save each completed dataset in a separate file (Multiple output files). In a single-group analysis, selecting Single output file yields one output data file, whereas selecting Multiple output files yields m separate data files. In a multiple-group analysis, when you select the Single output file option, you get a separate output file for each analysis group; if you select the Multiple output files option, you get m output files per group. For instance, if you had four groups and requested five completed datasets, then selecting Single output file would give you four output files, and selecting Multiple output files would give you 20. Since we are going to use 465 Data Imputation SPSS Statistics to analyze the completed datasets, the simplest thing would be to select Single output file. Then, the split file capability of SPSS Statistics could be used in Step 2 to analyze each completed dataset separately. However, to make it easy to replicate this example using any regression program: E Select Multiple output files. You can save imputed data in two file formats: plain text or SPSS Statistics format. E Click File Names to display a Save As dialog box. E In the File name text box, you can specify a prefix name for the imputed datasets. Here, we have specified Grant_Imp. Amos will name the imputed data files Grant_Imp1, Grant_Imp2, and so on through Grant_Imp10. E Use the Save as type drop-down list to select plain text (.txt) or the SPSS Statistics format (.sav). 466 Example 30 E Click Save. E Click Options in the Data Imputation window to display the available imputation options. The online help explains these options. To get an explanation of an option, place your mouse pointer over the option in question and press the F1 key. The figure below shows how the number of observations can be changed from 10,000 (the default) to 30,000. E Close the Options dialog box and click the Impute button in the Data Imputation window. After a short time, the following message appears: E Click OK. Amos lists the names of the completed data files. 467 Data Imputation Each completed data file contains 73 complete cases. Here is a view of the first few records of the first completed data file, Grant_Imp1.sav: 468 Example 30 Here is an identical view of the second completed data file, Grant_Imp2.sav: The values in the first two cases for visperc were observed in the original data file and therefore do not change across the imputed data files. By contrast, the values for these cases for cubes were missing in the original data file, Grant_x.sav, so Amos has imputed different values across the imputed data files for cubes for these two cases. In addition to the original observed variables, Amos added four new variables to the imputed data files. Spatial and verbal are imputed latent variable scores. CaseNo and Imputation_ are the case number and completed dataset number, respectively. Example 31 Analyzing Multiply Imputed Datasets Introduction This example demonstrates the analysis of multiply (pronounced multiplee) imputed datasets. Analyzing the Imputed Data Files Using SPSS Statistics Ten completed datasets were created in Example 30. That was Step 1 in a three-step process: Use the Data Imputation feature of Amos to impute m complete data files. (Here, m = 10.) The next two steps are: Step 2: Perform an analysis of each of the m completed data files separately. Step 3: Combine the results from the analyses of the m data files. The analysis in Step 2 can be performed using Amos, SPSS Statistics, or any other program. Without knowing ahead of time what program will be used to analyze the completed datasets, it is not possible to automate Steps 2 and 3. To walk through Steps 2 and 3 for a specific problem, we will analyze the completed datasets by using SPSS Statistics to carry out a regression analysis in which one variable (sentence) is used to predict another variable (wordmean). We will focus specifically on the estimation of the regression weight and its standard error. 469 470 Example 31 Step 2: Ten Separate Analyses For each of the 10 completed datasets from Example 30, we need to perform a regression analysis in which sentence is used to predict wordmean. We start by opening the first completed dataset, Grant_Imp1.sav, in SPSS Statistics. E From the SPSS Statistics menus, choose Analyze > Regression > Linear and perform the regression analysis. (We assume you do not need detailed instructions for this step.) The results are as follows: Coefficientsa Unstandardized Coefficients Model 1 B (Constant) sentence Std. Error -2.712 3.110 1.106 .160 Standardized Coefficients Beta t .634 Sig. -.872 .386 6.908 .000 a. Dependent Variable: wordmean We are going to focus on the regression weight estimate (1.106) and its estimated standard error (0.160). Repeating the analysis that was just performed for each of the other nine completed datasets gives nine more estimates for the regression weight and for its standard error. All 10 estimates and standard errors are shown in the following table: 471 Analyzing Multiply Imputed Datasets Imputation ML Estimate ML Standard Error 1 2 3 4 5 6 7 8 9 10 1.106 1.080 1.118 1.273 1.102 1.286 1.121 1.283 1.270 1.081 0.160 0.160 0.151 0.155 0.154 0.152 0.139 0.140 0.156 0.157 Step 3: Combining Results of Multiply Imputed Data Files The standard errors from an analysis of any single completed dataset are not accurate because they do not take into account the uncertainty arising from imputing missing data values. The estimates and standard errors must be gathered from the separate analyses of the completed data files and combined into single summary values, one summary value for the parameter estimate and another summary value for the standard error of the parameter estimate. Formulas for doing this (Rubin, 1987) can be found in many places. The formulas below were taken from Schafer (1997, p. 109). The remainder of this section applies those formulas to the table of 10 estimates and 10 standard errors shown above. In what follows: Let m be the number of completed datasets (m = 10 in this case). ˆ ( t ) be the estimate from sample t, so Q ˆ ( 1 ) = 1.106, Q ˆ ( 2 ) = 1.080, and so on. Let Q (t) Let U be the estimated standard error from sample t, so 0.160, and so on. U (1) = 0.160, U (2) = Then the multiple-imputation estimate of the regression weight is simply the mean of the 10 estimates from the 10 completed datasets: 1 m ˆ (t ) Q = ∑ Q = 1.172 m t =1 472 Example 31 To obtain a standard error for the combined parameter estimate, go through the following steps: E Compute the average within-imputation variance. 1 U = ---m m ∑U (t) = 0.0233 t=1 E Compute the between-imputation variance. 1 B = ------------m–1 m ∑( Qˆ (t) 2 – Q ) = 0.0085 t=1 E Compute the total variance. 1 1 T = U + ⎛ 1 + ----⎞ B = 0.0233 + ⎛ 1 + ------⎞ 0.0085 = 0.0326 ⎝ ⎝ m⎠ 10⎠ The multiple-group standard error is then T = 0.0326 = 0.1807 A test of the null hypothesis that the regression weight is 0 in the population can be based on the statistic Q 1.172 ------- = ---------------- = 6.49 0.1807 T which, if the regression weight is 0, has a t distribution with degrees of freedom given by 2 U - = ( 10 – 1 ) 1 + ------------------------------------0.0233 v = ( m – 1 ) 1 + ---------------------1⎞ 1⎞ ⎛ 1 + --⎛ 1 + ----- B - 0.0085 ⎝ ⎝ m⎠ 10⎠ 2 = 109 A calculator that implements these formulas and also provides multiple-imputation confidence intervals can be downloaded from http://www.amosdevelopment.com/bayes/calculator. Joseph Schafer’s NORM program also performs these calculations. NORM can be downloaded from http://www.stat.psu.edu/~jls/misoftwa.html#win. 473 Analyzing Multiply Imputed Datasets Further Reading Amos provides several advanced methods of handling missing data, including FIML (described in Example 17), multiple imputation, and Bayesian estimation. To learn more about each method, consult Schafer and Graham (2002) for an overview of the strengths of FIML and multiple imputation. Allison has a concise, readable monograph that covers both FIML and multiple imputation, including a number of worked examples and an excellent discussion of how to handle non-normal and categorical variables within the context of multiple imputation methods that assume multivariate normality (Allison, 2002). Schafer (1997) provides an in-depth, technical treatment of multiple imputation. Schafer and Olsen (1998) provide a readable, step-by-step guide to performing multiple imputation. A SEM-specific study comparing the statistical performance of FIML and multiple imputation in structural equation models is also available (Olinsky, Chen, and Harlow, 2003). Lastly, it is worth noting that the Bayesian estimation approach discussed in Examples 26 through 29 is similar to FIML in its handling of missing data. Ibrahim and colleagues recently compared the performance of FIML, Bayesian estimation, probability weighting, and multiple imputation approaches to address incomplete data problems and concluded that these four approaches were generally similar in their satisfactory performance for handling incomplete data problems in which the missing data arose from a missing-at-random (MAR) process (Ibrahim, Chen, Lipsitz, and Herring, 2005). While their review considered generalized linear models rather than SEM, their results and conclusions should be generally applicable to a wide range of statistical models and data analysis scenarios, including those featuring SEM. Example 32 Censored Data Introduction This example demonstrates parameter estimation, estimation of posterior predictive distributions, and data imputation with censored data. About the Data For this example, we use the censored data from 103 patients who were accepted into the Stanford Heart Transplantation Program during the years 1967 through 1974. The data were collected by Crowley and Hu (1977) and have been reanalyzed by Kalbfleisch and Prentice (2002), among others. The dataset is saved in the file transplant-a.sav. 475 476 Example 32 Reading across the first visible row in the figure above, Patient 17 was accepted into the program in 1968. The patient at that time was 20.33 years old. The patient died 35 days later. The next number, 5.916, is the square root of 35. Amos assumes that censored variables are normally distributed. The square root of survival time will be used in this example in the belief that it is probably more nearly normally distributed than is survival time itself. Uncensored simply means that we know how long the patient lived. In other words, the patient has already died, and that is how we are able to tell that he lived for 35 days after being admitted into the program. Some patients were still alive when last seen. For example, Patient 25 entered the program in 1969 at the age of 33.22 years. The patient was last seen 1,799 days later. The number 42.415 is the square root of 1,799. The word censored in the Status column means that the patient was still alive 1,799 days after being accepted into the program, and that is the last time the patient was seen. So, we can’t say that the patient survived for 1,799 days. In fact, he survived for longer than that; we just don’t know how much longer. There are more cases like that. Patient number 26 was last seen 1,400 days after acceptance into the program and, at that time, was still alive, so we know that that patient lived for at least 1,400 days. It is not clear what is to be done with a censored value like Patient 25’s survival time of 1,799 days. You can’t just discard the 1,799 and all the other censored values because that amounts to discarding the patients who lived a long time. On the other hand, you can’t keep the 1,799 and treat it as an ordinary score because you know the patient really lived for more than 1,799 days. In Amos, you can use the information that Patient 25 lived for more than 1,799 days, neither discarding the information nor pretending that the patient’s survival time is 477 Censored Data known more precisely than it is. Of course, wherever the data provide an exact numeric value, as in the case of Patient 24 who is known to have survived for 218 days, that exact numeric value is used. Recoding the Data The data file needs to be recoded before Amos reads it. The next figure shows a portion of the dataset after recoding. (This complete dataset is in the file transplant-b.sav.) Every uncensored observation appears in the new data file just the way it did in the original data file. Censored values, however, are coded differently. For example, Patient 25’s survival time, which is known only to be greater than 1,799, is coded as > 1799 in the new data file. (Spaces in a string like > 1799 are optional.) The square root of survival time is known to be greater than 42.415, so the timesqr column of the data file contains > 42.415 for Patient 25. For data file formats (like SPSS Statistics) that make a distinction between numeric and string variables, time and timesqr need to be coded as string variables. Analyzing the Data To specify the data file in Amos Graphics: E From the menus, choose File > Data Files. 478 Example 32 E Then in the Data Files dialog box, click the File Name button. E Select the data file transplant-b.sav. E Select Allow non-numeric data (a check mark appears next to it). Recoding the data as shown above and selecting Allow non-numeric data are the only extra steps that are required for analyzing censored data. In all other respects, fitting a model with censored data and interpreting the results is exactly the same as if the data were purely numeric. Performing a Regression Analysis Let’s try predicting timesqr using age and year of acceptance (acceptyr) as predictors. Begin by drawing the following path diagram: age 0, timesqr acceptyr 1 e 479 Censored Data To fit the model: E Click on the toolbar. or E From the menus, choose Analyze > Bayesian Estimation. Note: The button is disabled because, with non-numeric data, you can perform only Bayesian estimation. After the Bayesian SEM window opens, wait until the unhappy face changes into a happy face . The table of estimates in the Bayesian SEM window should look something like this: (Only a portion of the table is shown in the figure.) The Mean column contains point estimates for the parameters. The regression weight for using acceptyr to predict timesqr is 1.45, so that each time the calendar advances by one year, you predict an increase of 1.45 in the square root of survival time. This suggests that the transplant program may have been improving over the period covered by the study. The regression weight for using age to predict timesqr is –0.29, so for every year older a patient is when admitted into the transplant program, you expect a decrease of 0.29 in the square root of survival time. The regression weight estimate of –0.29 is actually the mean of the posterior distribution of the regression weight. E To see the entire posterior distribution, right-click the row that contains the –0.29 estimate and choose Show Posterior from the pop-up menu. 480 Example 32 The Posterior dialog box opens, displaying the posterior distribution of the regression weight. The posterior distribution of the regression weight is indeed centered around –0.29. The distribution lies almost entirely between –0.75 and 0.25, so it is practically guaranteed that the regression weight lies in that range. Most of the distribution lies between –0.5 and 0, so we are pretty sure that the regression weight lies between –0.5 and 0. 481 Censored Data Posterior Predictive Distributions Recall that the dataset contains some censored values like Patient 25’s survival time. All we really know about Patient 25’s survival time is that it is longer than 1,799 days or, equivalently, that the square root of survival time exceeds 42.415. Even though we do not know the amount by which this patient’s timesqr exceeds 42.415, we can ask for its posterior distribution. Taking into account the fact that timesqr exceeds 42.415, assuming that the model is correct, and taking the patient’s age and acceptyr into account, what can be said about Patient 25’s survival time? To find out: E Click the Posterior Predictive button . or E From the menus, choose View > Posterior Predictive. The Posterior Predictive Distributions window shows a table with a row for every person and a column for every observed variable in the model. Looking in the 25th row, we see Patient 25’s age and acceptyr scores. For Patient 25’s timesqr, all we see is the symbol <<, which indicates that the data provide an inequality constraint on the timesqr score and not an actual numeric value. To see the posterior distribution of Patient 25’s timesqr: E Click <<. The posterior distribution appears in the Posterior window. 482 Example 32 The posterior distribution for Patient 25’s timesqr lies entirely to the right of 42.415. Of course, we knew from the data alone that timesqr exceeds 42.415, but now we also know that there is practically no chance that Patient 25’s timesqr exceeds 70. For that matter, there is only a slim chance that timesqr exceeds even 55. To see a posterior predictive distribution that looks very different from Patient 25’s: E Click the << symbol in the 100th row of the Posterior Predictive Distributions table. 483 Censored Data Patient 100 was still alive when last observed on the 38th day after acceptance into the program, so that his timesqr is known to exceed 6.164. The posterior distribution of that patient’s timesqr shows that it is practically guaranteed to be between 6.164 and 70, and almost certain to be between, 6.164 and 50. The mean is 27.36, providing a point estimate of timesqr if one is needed. Squaring 27.36 gives 748, an estimate of Patient 100’s survival time in days. 484 Example 32 Imputation You can use this model to impute values for the censored values. E Close the Bayesian SEM window if it is open. E From the Amos Graphics menu, choose Analyze > Data Imputation. Notice that Regression imputation and Stochastic regression imputation are disabled. When you have non-numeric data such as censored data, Bayesian imputation is the only choice. We will accept the options shown in the preceding figure, creating 10 completed datasets and saving all 10 in a single SPSS Statistics data file called transplantb_C.sav. To start the imputation: E Click the Impute button. The Bayesian SEM window opens along with the Data Imputation dialog box. 485 Censored Data E Wait until the Data Imputation dialog box displays a happy face to indicate that each of the 10 completed datasets is effectively uncorrelated with the others. Note: After you see a happy face but before you click OK, you may optionally choose to right-click a parameter in the Bayesian SEM window and choose Show Posterior from the pop-up menu. This will allow you to examine the Trace and Autocorrelation plots. E Click OK in the Data Imputation dialog box. The Summary window shows a list of the completed data files that were created. In this case, only one completed data file was created. 486 Example 32 E Double-click the file name to display the contents of the single completed data file, which contains 10 completed datasets. The file contains 1,030 cases because each of the 10 completed datasets contains 103 cases. The first 103 rows of the new data file contain the first completed dataset. The Imputation_ variable is equal to 1 for each row in the first completed dataset, and the CaseNo variable runs from 1 through 103. 487 Censored Data The first row of the completed data file contains a timesqr value of 7. Because that was not a censored value, 7 is not an imputed value. It is just an ordinary numeric value that was present in the original data file. On the other hand, Patient 25’s timesqr was censored, so that patient has an imputed timesqr (in this case, 49.66.) The value of 49.66 is a value drawn randomly from the posterior predictive distribution in the figure on p. 482. 488 Example 32 Normally, the next step would be to use the 10 completed datasets in transplantb_C.sav as input to some other program that cannot accept censored data. You would use that other program to perform 10 separate analyses, using each one of the 10 completed datasets in turn. Then you would do further computations to combine the results of those 10 separate analyses into a single set of results, as was done in Example 31. Those steps will not be carried out here. General Inequality Constraints on Data Values This example employed only inequality constraints like > 1799. Here are some other examples of string values that can be used in a data file to place inequality constraints on the value of an underlying numeric variable: The string value < 5 means that the underlying numeric value is less than 5. The string value 4<<5 means that the underlying numeric value is between 4 and 5. Example 33 Ordered-Categorical Data Introduction This example shows how to fit a factor analysis model to ordered-categorical data. It also shows how to find the posterior predictive distribution for the numeric variable that underlies a categorical response and how to impute a numeric value for a categorical response. About the Data This example uses data on attitudes toward environment issues obtained from a questionnaire administered to 1,017 respondents in the Netherlands. The data come from the European Values Study Group (see the bibliography for a citation). The data file environment-nl-string.sav contains responses to six questionnaire items with categorical responses strongly disagree (SD), disagree (D), agree (A), and strongly agree (SA). 489 490 Example 33 One way to analyze these data is to assign numbers to the four categorical responses; for example, using the assignment 1 = SD, 2 = D, 3 = A, 4 = SA. If you assign numbers to categories in that way, you get the dataset in environment-nl-numeric.sav. In an Amos analysis, it is not necessary to assign numbers to categories in the way just shown. It is possible to use only the ordinal properties of the four categorical responses. If you want to use only the ordinal properties of the data, you can use either dataset, environment-nl-string.sav or environment-nl-numeric.sav. 491 Ordered-Categorical Data It may be slightly easier to use environment-nl-numeric.sav because Amos will assume by default that the numbered categories go in the order 1, 2, 3, 4, with 1 being the lowest category. That happens to be the correct order. With environment-nlstring.sav, by contrast, Amos will assume by default that the categories are arranged alphabetically in the order A, D, SA, SD, with A being the lowest category. That is the wrong order, so the default ordering of the categories by Amos has to be overridden. The data file environment-nl-string.sav will be used for this example because then it will be clear that only the ordinal properties of the data are employed, and also you can see how to specify the correct ordering of the categories. Specifying the Data File E From the Amos Graphics menus, choose File > Data Files. E In the Data Files window, click the File Name button. E Select the data file environment-nl-string.sav. E Select Allow non-numeric data (a check mark appears next to it). E Click OK. 492 Example 33 Recoding the Data within Amos The ordinal properties of the data cannot be inferred from the data file alone. To give Amos the additional information it needs so that it can interpret the data values SD, D, A, and SA: E From the Amos Graphics menus, choose Tools > Data Recode. E Select item1 in the list of variables in the upper-left corner of the Data Recode window. This displays a frequency distribution of the responses to item1 at the bottom of the window. 493 Ordered-Categorical Data In the box labeled Recoding rule, the notation No recoding means that Amos will read the responses to item1 as is. In other words, it will read either SD, D, A, SA, or an empty string. We can’t leave things that way because Amos doesn’t know what to do with SD, D, and so on. E Click No recoding and select Ordered-categorical from the drop-down list. 494 Example 33 The frequency table at the bottom of the window now has a New Value column that shows how the item1 values in the data file will be recoded before Amos reads the data. The first row of the frequency table shows that empty strings in the original data file will be treated as missing values. The second row shows that the A response will be translated into the string <0.0783345405060296. Amos will interpret this to mean that there is a continuous numeric variable that underlies responses to item1, and that a person who gives the A response has a score that is less than 0.0783345405060296 on that underlying variable. Similarly, the third row shows that the D response will be translated into the string 0.0783345405060296<<0.442569286522029 and interpreted by Amos to mean that the score on the underlying numeric variable is between 0.0783345405060296 and 0.442569286522029. The numbers, 0.0783345405060296, 0.442569286522029, and so on, are derived from the frequencies in the Frequency 495 Ordered-Categorical Data column, based on the assumption that scores on the underlying numeric variable are normally distributed with a mean of 0 and a standard deviation of 1. The ordering of the categories in the Original Value column needs to be changed. To change the ordering: E Click the Details button. The Ordered-Categorical Details dialog box opens. The Ordered categories list box shows four response categories arranged in the order A, D, SA, SD, and separated from each other by dashed lines, <---->. The dashed lines represent three boundaries that divide the real numbers into four intervals, with the four intervals being associated with the four categorical responses. The assumption is made that a person who scores below the lowest boundary on some unobserved numeric variable gives the A response. A person who scores between the lowest boundary and the middle boundary gives the D response. A person who scores between the middle boundary and the highest boundary gives the SA response. Finally, a person who scores above the highest boundary gives the SD response. The program is correct about there being four categories (intervals) and three boundaries, but it has the ordering of the categories wrong. The program arbitrarily alphabetized the categories. We need to keep the four categories and the three boundaries but rearrange them. We want SD to fall in the lowest interval (below the lowest boundary), and so on. 496 Example 33 You can rearrange the categories and the boundaries. To do this: E Drag and drop with the mouse. or E Select a category or boundary with the mouse and then click the Up or Down button. After putting the categories and boundaries in the correct order, the OrderedCategorical Details dialog box looks like this: The Unordered categories list box contains a list of values that Amos will treat as missing. At the moment, the list contains one entry, [empty string], so that Amos will treat an empty string as a missing value. If a response coded as an empty string was actually a response that could be meaningfully compared to SD, D, A, and SA, then you would select [empty string] in the Unordered categories list box and click the Down button to move [empty string] into the Ordered categories list box. Similarly, if a response in the Ordered categories list box, for example SD, was not comparable to the other responses, you would select it with the mouse and click the Up button to move it into the Unordered categories list box. Then SD would be treated as a missing value. 497 Ordered-Categorical Data Note: You can’t drag and drop between the Ordered categories list box and the Unordered categories list box. You have to use the Up and Down buttons to move a category from one box to the other. We could stop here and close the Ordered-Categorical Details dialog box because we have the right number of boundaries and categories and we have the categories going in the right order. However, we will make a further change based on a suggestion by Croon (2002), who also worked with this dataset and concluded that the SD category occurred so seldom that it should be combined with the D category. To merge those two categories into a single category: E Select the boundary between the two categories you want to merge. E Click the Remove Boundary button. The Ordered categories list now looks like this: Now the SD response and the D response are indistinguishable. Either response means that the person who gave the response has a score that lies in the lowest interval on the underlying numeric variable. There remains the question of the values of the two boundaries that separate the three intervals. If you do not specify values for the boundaries, Amos will estimate the boundaries by assuming that scores on the underlying numeric variable are normally 498 Example 33 distributed with a mean of 0 and a standard deviation of 1. Alternatively, you can assign a value to a boundary instead of letting Amos estimate it. To assign a value: E Select the boundary with the mouse. E Type a numeric value in the text box. The following figure shows the result of assigning values 0 and 1 to the two boundaries. Although it may not be obvious, it is permissible to assign 0 and 1, or any pair of numbers, to the two boundaries, as long as the higher boundary is assigned a larger value than the lower one. No matter how many boundaries there are (as long as there are at least two), assigning values to two of the boundaries amounts to choosing a zero point and a unit of measurement for the underlying numeric variable. The scaling of the underlying numeric variable is discussed further in the Help file under the topic “Choosing boundaries when there are three categories.” E Click OK to close the Ordered-Categorical Details dialog box. 499 Ordered-Categorical Data The changes that were just made to the categories and the interval boundaries are now reflected in the frequency table at the bottom of the Data Recode window. The frequency table shows how the values that appear in the data file will be recoded before Amos reads them. Reading the frequency table from top to bottom: An empty string will be treated as a missing value. The strings SD and D will be recoded as <0, meaning that the underlying numeric score is less than 0. A will be recoded as 0<<1, meaning that the underlying numeric score is between 0 and 1. SA will be recoded as >1, meaning that the underlying numeric score is greater than 1. 500 Example 33 That takes care of item1. What was just done for item1 has to be repeated for each of the five remaining observed variables. After specifying the recoding for all six observed variables, you can view the original dataset along with the recoded variables. To do this: E Click the View Data button. The table on the left shows the contents of the original data file before recoding. The table on the right shows the recoded variables after recoding. When Amos performs an analysis, it reads the recoded values, not the original values. Note: You can create a raw data file in which the data recoding has already been performed. In other words, you can create a raw data file that contains the inequalities on the right-hand side of the figure above. In that case, you wouldn’t need to use the Data Recode window in Amos. Indeed, that approach was used in Chapter 32. E Finally, close the Data Recode window before specifying the model. Specifying the Model After you have specified the rules for data recoding as shown above, the analysis proceeds just like any Bayesian analysis. For this example, a factor analysis model will be fitted to the six questionnaire items in the environment dataset. The first three items were designed to be measures of willingness to spend money to take care of the 501 Ordered-Categorical Data environment. The other three items were designed to be measures of awareness of environmental issues. This design of the questionnaire is reflected in the following factor analysis model, which is saved in the file Ex33-a.amw. 0, 1 WILLING item1 item2 item3 item4 AWARE 0, 1 item5 item6 1 1 1 1 1 1 e1 0, e2 0, e3 0, e4 0, e5 0, e6 0, The path diagram is drawn exactly as it would be drawn for numeric data. This is one of the good things about having at least three categories for each ordered-categorical variable: You can specify a model in the way that you are used to, just as though all the variables were numeric, and the model will work for any combination of numeric and ordered-categorical variables. If variables are dichotomous, you will need to impose additional parameter constraints in order to make the model identified. This issue is discussed further in the online help under the topic “Parameter identification with dichotomous variables.” Fitting the Model E Click on the toolbar. or E From the menus, choose Analyze > Bayesian Estimation. Note: The button is disabled because, with non-numeric data, you can perform only Bayesian estimation. 502 Example 33 After the Bayesian SEM window opens, wait until the unhappy face changes into a happy face. The Bayesian SEM window should then look something like this: (The figure above shows some, but not all, of the parameter estimates.) The Mean column provides a point estimate for each parameter. For example, the regression weight for using WILLING to predict item1 is estimated to be 0.59. The skewness (0.09) and kurtosis (–0.01) of the posterior distribution are close to 0, which is compatible with the posterior distribution being nearly normal. The standard deviation (S.D.) is 0.03, so there is about a 67% chance that the regression weight is within 0.03 of 0.59. Doubling the standard deviation gives 0.06, so there is about a 95% chance that the regression weight is within 0.06 of 0.59. To view the posterior distribution of the regression weight: E Right-click its row and choose Show Posterior from the pop-up menu. 503 Ordered-Categorical Data The Posterior window displays the posterior distribution. The appearance of the distribution confirms what was concluded above from the mean, standard deviation, skewness, and kurtosis of the distribution. The shape of the distribution is nearly normal, and it looks like roughly 95% of the area lies between 0.53 and 0.65 (that is, within 0.06 of 0.59). 504 Example 33 MCMC Diagnostics If you know how to interpret the diagnostic output from MCMC algorithms (for example, see Gelman, et al, 2004), you might want to view the Trace plot and the Autocorrelation plot. 505 Ordered-Categorical Data The First and last plot provides another diagnostic. It shows two estimates of the posterior distribution (two superimposed plots), one estimate from the first third of the MCMC sample and another estimate from the last third of the MCMC sample. 506 Example 33 Posterior Predictive Distributions When you think of estimation, you normally think of estimating model parameters or some function of the model parameters such as a standardized regression weight or an indirect effect. However, there are other unknown quantities in the present analysis. Each entry in the data table on p. 490 represents a numeric value that is either unknown or partially known. For example, Person 1 did not respond to item2, so we can only guess at (estimate) that person’s score on the underlying numeric variable. On the other hand, it seems like we ought to be able to make a fairly educated guess about the underlying numeric value, considering that we know how the person responded to the other items, and that we can also make use of the assumption that the model is correct. 507 Ordered-Categorical Data We are in an even better position to guess at Person 1’s score on the numeric variable that underlies item1 because Person 1 gave a response to item1. This person’s response places his or her score in the middle interval, between the two boundaries. Since the two boundaries were arbitrarily fixed at 0 and 1, we know that the score is somewhere between 0 and 1, but it seems like we should be able to say more than that by using the person’s responses on the other variables along with the assumption that the model is correct. In Bayesian estimation, all unknown quantities are treated in the same way. Just as unknown parameter values are estimated by giving their posterior distribution, so are unknown data values. A posterior distribution for an unknown data value is called a posterior predictive distribution, but it is interpreted just like any posterior distribution. To view posterior predictive distributions for unknown data values: E Click the Posterior Predictive button . or E From the menus, choose View > Posterior Predictive. The Posterior Predictive Distributions window appears. 508 Example 33 The Posterior Predictive Distributions window contains a table with a row for every person and a column for every observed variable in the model. An asterisk (*) indicates a missing value, while << indicates a response that places inequality constraints on the underlying numeric variable. To display the posterior distribution for an item: E Click on the table entry in the upper-left corner (Person 1’s response to item1). The Posterior window opens, displaying the posterior distribution of Person 1’s underlying numeric score. At first, the posterior distribution looks jagged and random. 509 Ordered-Categorical Data That is because the program is building up an estimate of the posterior distribution as MCMC sampling proceeds. The longer you wait, the better the estimate of the posterior distribution will be. After a while, the estimate of the posterior distribution stabilizes and looks something like this: The posterior distribution shows that Person 1’s score on the numeric variable that underlies his or her response to item1 is between 0 and 1 (which we knew already), and that the score is more likely to be close to 1 than close to 0. 510 Example 33 E Next, click the table entry in the first column of the 22nd row to estimate Person 22’s score on the numeric variable that underlies his or her response to item1. After you wait a while to get a good estimate of the posterior distribution, you see this: Both Person 1 and Person 22 gave the agree response to item1, so both people have scores between 0 and 1 on the underlying numeric variable; however, their posterior distributions are very different For another example of a posterior predictive distribution, select a missing value like Person 1’s response to item2. After allowing MCMC sampling to proceed long enough to get a good estimate of the posterior distribution, it looks like this: 511 Ordered-Categorical Data The mean of the posterior distribution (0.52) can be taken as an estimate of Person 1’s score on the underlying variable if a point estimate is required. Looking at the plot of the posterior distribution, we can be nearly 100% sure that the score is between –1 and 2. The score is probably between 0 and 1 because most of the area under the posterior distribution lies between 0 and 1. Posterior Predictive Distributions for Latent Variables Suppose you want to estimate Person 1’s score on the WILLING factor. Amos can estimate posterior predictive distributions for unknown scores only for observed variables. It cannot estimate a posterior predictive distribution of a score on a latent variable. However, there is a trick that you can use to estimate the posterior predictive distribution of a score on WILLING. You can change WILLING to an observed variable, treating it not as a latent variable but as an observed variable that has a missing value for every case. That requires two changes – a change to the path diagram and a change to the data. In the path diagram, the WILLING ellipse has to be changed into a rectangle. To accomplish this: E Right-click the WILLING ellipse and choose Toggle Observed/Unobserved from the pop- up menu. E Click the WILLING ellipse. The WILLING ellipse changes to a rectangle so that the path diagram looks like this: 512 Example 33 0, 1 WILLING item1 item2 item3 item4 AWARE 0, 1 item5 item6 1 1 1 1 1 1 e1 0, e2 0, e3 0, e4 0, e5 0, e6 0, That takes care of the path diagram. It is also necessary to make a change to the data because if WILLING is an observed variable, then there has to be a WILLING column in the data file. You can directly modify the data file. Since this is a data file in SPSS Statistics format, you would use SPSS Statistics to add a WILLING variable to the data file, making sure that all the scores on WILLING are missing. To avoid changing the original data file: E Right-click the WILLING variable in the path diagram E Choose Data Recode from the pop-up menu to open the Data Recode window. E In the Data Recode window, click Create Variable. A new variable with the default name V1, appears in the New and recoded variables list box. 513 Ordered-Categorical Data E Change V1 to WILLING. (If necessary, click the Rename Variable button.) 514 Example 33 E You can optionally view the recoded dataset that includes the new WILLING variable by clicking the View Data button. 515 Ordered-Categorical Data The table on the left shows the original dataset. The table on the right shows the recoded dataset as read by Amos. It includes item1 through item6 after recoding, and also the new WILLING variable. E Close the Data Recode window. E Start the Bayesian analysis by clicking on the Amos Graphics toolbar. E In the Bayesian SEM window, wait until the unhappy face face and then click the Posterior Predictive button . changes into a happy E Click the entry in the upper-right corner of the table to display the posterior distribution of Person 1’s score on the WILLING factor. 516 Example 33 Imputation Data imputation works the same way for ordered-categorical data as it does for numeric data. With ordered-categorical data, you can impute numeric values for missing values, for scores on latent variables, and for scores on the unobserved numeric variables that underlie observed ordered-categorical measurements. You need a model in order to perform imputation. You could use the factor analysis model that was used earlier. There are several advantages and one disadvantage to using the factor analysis model for imputation. One advantage is that, if the model is correct, you can impute values for the factors. That is, you can create a new data set in which WILLING and AWARE are observed variables. The other advantage is that, if the factor analysis model is correct, it can be expected to give more accurate imputations for item1 through item6 than would be obtained from a less restrictive model. The disadvantage of using the factor analysis model is that it may be wrong. To be on the safe side, the present example will use the model that has the biggest chance of being correct, the saturated model shown in the following figure. (See the file Ex33-c.amw.) 517 Ordered-Categorical Data item1 item2 item3 item4 item5 item6 After drawing the path diagram for the saturated model, you can begin the imputation. E From the Amos Graphics menu, choose Analyze > Data Imputation. 518 Example 33 In the Amos Data Imputation window, notice that Regression imputation and Stochastic regression imputation are disabled. When you have non-numeric data, Bayesian imputation is the only choice. We will accept the options shown in the preceding figure, creating 10 completed datasets and saving all 10 in a single SPSS Statistics data file called environment-nlstring_C.sav. To start the imputation: E Click the Impute button. The Bayesian SEM window opens along with the Data Imputation dialog box. E Wait until the Data Imputation dialog box displays a happy face to indicate that each of the 10 completed data sets is effectively uncorrelated with the others. Note: After you see a happy face but before you click OK, you may optionally right- click a parameter in the Bayesian SEM window and choose Show Posterior from the pop-up menu. This will allow you to examine the Trace and Autocorrelation plots. 519 Ordered-Categorical Data E Click OK in the Data Imputation dialog box. The Summary window shows a list of the completed data files that were created. In this case, only one completed data file was created. E Double-click the file name in the Summary window to display the contents of the single completed data file, which contains 10 completed data sets. The file contains 10,170 cases because each of the 10 completed datasets contains 1,017 cases. The first 1,017 rows of the new data file contain the first completed dataset. The Imputation_ variable is equal to 1 for each row in the first completed dataset, and the CaseNo variable runs from 1 through 1,017 before starting over again at 1. 520 Example 33 Normally, the next step would be to use the 10 completed datasets in environment-nlstring_C.sav as input to some other program that requires numeric (not orderedcategorical) data. You would use that other program to perform 10 separate analyses using each one of the 10 completed data sets in turn. Then, you would do further computations to combine the results of those 10 separate analyses into a single set of results, as was done in Example 31. Those steps will not be carried out here. Example 34 Mixture Modeling with Training Data Introduction Mixture modeling is appropriate when you have a model that is incorrect for an entire population, but where the population can be divided into subgroups in such a way that the model is correct in each subgroup. Mixture modeling is discussed in the context of structural equation modeling by Arminger, Stein, and Wittenberg (1999), Hoshino (2001), Lee (2007, Chapter 11), Loken (2004), Vermunt and Magidson (2005), and Zhu and Lee (2001), among others. The present example demonstrates mixture modeling for the situation in which some cases have already been assigned to groups while other cases have not. It is up to Amos to learn from the cases that are already classified and to classify the others. We begin mixture modeling with an example in which some cases have already been classified because setting up such an analysis is almost identical to setting up an ordinary multiple-group analysis such as in Examples 10, 11, and 12. It is possible to perform mixture modeling when no cases have been classified in advance so that the program must classify every case. Example 35 demonstrates this type of analysis. About the Data The data for this example were collected by Anderson (1935) and used by Fisher (1936) to demonstrate discriminant analysis. The original data are in the file iris.sav, of which a portion is shown here: 521 522 Example 34 The dataset contains four measurements on flowers from 150 different plants. The first 50 flowers were irises of the species setosa. The next 50 were irises of the species versicolor. The last 50 were of the species virginica. A scatterplot of two of the numeric measurements, PetalLength and PetalWidth, suggests that those two measurements alone will be useful in classifying the flowers according to species. 523 Mixture Modeling with Training Data & & PetalLength 6.0 % % % % % % % % % % % % 4.0 % % % % % % % & & & & & & & & & % & & & % & & & % % % % % % % % % % & % % & & & & Species & & & & & & & & & & & & & & & & & & & & & & & $ setosa % versicolor & virginica % % % 2.0 $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ 0.5 1.0 1.5 2.0 2.5 PetalWidth The setosa flowers are all by themselves in the lower left corner of the scatterplot. It should therefore be easy for Amos to use PetalLength and PetalWidth to distinguish the setosa flowers from the others. On the other hand, there is some overlap of versicolor and virginica, so we should expect that sometimes it will be hard to tell whether a flower is versicolor or virginica purely on the basis of PetalLength and PetalWidth. This example will not use the iris.sav dataset, which gives the species of every flower. Instead, the example will use the iris3.sav dataset, which gives the species for only a few flowers. The following figure shows a portion of the iris3.sav dataset. 524 Example 34 Species information is available for 10 of the setosa flowers, 10 of the versicolor flowers, and 10 of the virginica flowers. Species is unknown for the remaining 120 flowers. When Amos analyzes these data, it will have 10 examples of each kind of flower to assist in classifying the rest of the flowers. Performing the Analysis E From the menus, choose File > New to start a new path diagram. E From the menus, choose Analyze > Manage Groups. E In the Manage Groups dialog box, change the name in the Group Name text box from Group number 1 to PossiblySetosa. 525 Mixture Modeling with Training Data E Click New to create a second group. E Change the name in the Group Name text box from Group number 2 to PossiblyVersicolor. E Click New to create a third group. E Change the name in the Group Name text box from Group number 3 to PossiblyVirginica. E Click Close. 526 Example 34 Specifying the Data File E From the menus, choose File > Data Files. E Click PossiblySetosa to select that row. E Click File Name, select the iris3.sav file that is in the Amos Examples directory, and click Open. E Click Grouping Variable and double-click Species in the Choose a Grouping Variable dialog box. This tells the program that the Species variable will be used for classifying flowers. 527 Mixture Modeling with Training Data E In the Data Files dialog box, click Group Value and then double-click setosa in the Choose Value for Group dialog box. 528 Example 34 The Data Files dialog box should now look like this: 529 Mixture Modeling with Training Data E Repeat the preceding steps for the PossiblyVersicolor group, but this time double-click versicolor in the Choose Value for Group dialog box. E Repeat the preceding steps once more for the PossiblyVirginica group, but this time double-click virginica in the Choose Value for Group dialog box. The Data Files dialog box will end up looking like this: So far, the analysis has been set up exactly like an ordinary three-group analysis in which the species of every flower is known. The next step is unique to mixture modeling. E Select Assign cases to groups (a check mark will appear next to it). The check mark tells Amos to assign a case to a group whenever the dataset does not specify which group that case belongs to. 530 Example 34 E Click OK to close the Data Files dialog box. Specifying the Model We will use a saturated model for the variables PetalLength and PetalWidth. The scatterplot that was shown earlier suggests that these two variables will allow the program to do a good job of classifying the flowers according to species. Note that you are not limited to saturated models when doing mixture modeling. You can use a factor analysis model or a regression model or any other kind of model. See Example 36 for a demonstration of mixture modeling with a regression model. E Draw the following path diagram. (This path diagram is saved as Ex34-a.amw.) 531 Mixture Modeling with Training Data E From the menus, choose View > Analysis Properties. E Select Estimate means and intercepts (a check mark will appear next to it). 532 Example 34 Fitting the Model E Click on the toolbar. or E From the menus, choose Analyze > Bayesian Estimation. Note: The button is disabled because, in mixture modeling, you can perform only Bayesian estimation. 533 Mixture Modeling with Training Data After the Bayesian SEM window opens, wait until the unhappy face changes into a happy face . The table of estimates in the Bayesian SEM window should look something like this: The Bayesian SEM window displays all of the parameter estimates that you would get in an ordinary three-group analysis. The table displays the results for one group at a time. You can switch from one group to another by clicking the tabs at the top of the table. In this example, the model parameters include only means, variances, and covariances. In a more complicated model, there would also be estimates of regression weights and intercepts. In a mixture modeling analysis, you also get an estimate of the proportion of the population that lies in each group. The preceding figure shows that the proportion of 534 Example 34 setosa flowers in the population is estimated to be 0.333. (It should be pointed out that it was by design that the sample contained equal numbers of setosa, versicolor, and virginica flowers. It is therefore not meaningful in this example to draw inferences about population proportions from the sample. Nevertheless, we will treat species here as a random variable in order to demonstrate how such inferences can be made.) To view the posterior distribution of a population proportion, right-click the row that contains the proportion and choose Show Posterior from the pop-up menu. 535 Mixture Modeling with Training Data The Posterior window shows that the proportion of flowers that belong to the setosa species is almost certainly between 0.25 and 0.45. It looks like there is about a 50–50 chance that the proportion is somewhere between 0.3 and 0.35. Classifying Individual Cases To obtain probabilities of group membership for each individual flower: E Click the Posterior Predictive button . or E From the menus, choose View > Posterior Predictive. 536 Example 34 For each flower, the Posterior Predictive Distributions window shows the probability that that flower is setosa, versicolor, or virginica. For the first 50 flowers (the ones that actually are setosa), the probability of membership in the setosa group is nearly 1. We expected that result because the setosa flowers were clearly separated from flowers of other species in the scatterplot shown earlier. Most of the versicolor flowers (starting with case number 51) were also correctly classified. For example, flower number 51 has posterior probability 0.95 of being versicolor. However, classification errors do occur. Case number 71, for example, is misclassified. It is a versicolor flower, but it is estimated to have a 0.74 probability of being virginica. 537 Mixture Modeling with Training Data Latent Structure Analysis It was mentioned earlier that you are not limited to saturated models when doing mixture modeling. You can use a factor analysis model, a regression model, or any model at all. You may want to become familiar with an important variation of the saturated model. Latent structure analysis (Lazarsfeld and Henry, 1968) is a variation of mixture modeling in which the measured variables are required to be independent within each group. When the measured variables are multivariate normal, they are required to be uncorrelated. E To require that the measured variables be uncorrelated, delete the double-headed arrow in the path diagram of the saturated model. (This path diagram is saved as Ex34b.amw.) E Click the Bayesian button to perform the latent structure analysis. The results of the latent structure analysis will not be presented here. Example 35 Mixture Modeling without Training Data Introduction Mixture modeling is appropriate when you have a model that is incorrect for an entire population, but where the population can be divided into subgroups in such a way that the model is correct in each subgroup. When Amos performs mixture modeling, it allows you to assign some cases to groups before the analysis starts. Example 34 shows how to do that. In the present example, all cases are unclassified at the start of the mixture modeling analysis. About the Data This example uses the Anderson (1935) iris data that was used in Example 34. This time, however, we will not use the iris3.sav dataset, which contains species information for 30 of the 150 flowers. Instead, we will use the iris2.sav dataset, which contains no species information at all. That is the difference between Example 34 and the present example: In Example 34, some cases were pre-classified; in the present example, no cases are pre-classified. The following figure shows a portion of the iris2.sav dataset. 539 540 Example 35 Notice that the dataset contains a Species column, even though that column is empty. It is important that the Species column be present even if it contains no values. This is because Amos allows for the possibility that you might already know the species of some cases (as in Example 34). The variable that is used for classifying cases does not actually have to be named Species. Any variable name will do. The variable does, however, have to be a string (non-numeric) variable. Performing the Analysis E From the menus, choose File > New to start a new path diagram. E From the menus, choose Analyze > Manage Groups. 541 Mixture Modeling without Training Data E Click New to create a second group. E Click New once more to create a third group. E Click Close. This example fits a three-group mixture model. When you aren’t sure how many groups there are, you can run the program multiple times. Run the program once to fit a two-group model, then again to fit a three-group model, and so on. 542 Example 35 Specifying the Data File E From the menus, choose File > Data Files. E Click Group number 1 to select the first row. E Click File Name, select the iris2.sav file that is in the Amos Examples directory, and click Open. E Click Grouping Variable and double-click Species in the Choose a Grouping Variable dialog box. This tells the program that the Species variable will be used to distinguish one group from another. 543 Mixture Modeling without Training Data E Repeat the preceding steps for Group number 2, specifying the same data file (iris2.sav) and the same grouping variable (Species). E Repeat the preceding steps once more for Group number 3, specifying the same data file (iris2.sav) and the same grouping variable (Species). 544 Example 35 E Select Assign cases to groups (a check mark will appear next to it). So far, this has been just like any ordinary multiple-group analysis except for the check mark next to Assign cases to groups. That check mark turns this into a mixture modeling analysis. The check mark tells Amos to assign a flower to a group if the grouping variable in the data file does not already assign it to a group. Notice that it 545 Mixture Modeling without Training Data was not necessary to click Group Value to specify a value for the grouping variable. The data file contains no values for the grouping variable (Species), so the program automatically constructed the following Species values for the three groups: Cluster1, Cluster2, and Cluster3. E Click OK to close the Data Files dialog box. Specifying the Model We will use a saturated model for the variables PetalLength and PetalWidth. The scatterplot in Example 34 suggests that these two variables will allow the program to do a good job of classifying the flowers according to species. Note that you are not limited to saturated models when doing mixture modeling. You can use a factor analysis model, a regression model, or any other kind of model. Example 36 demonstrates mixture modeling with a regression model. E Draw the following path diagram: E From the menus, choose View > Analysis Properties. E Select Estimate means and intercepts (a check mark will appear next to it). 546 Example 35 Constraining the Parameters In this example, variances and covariances will be required to be invariant across groups. This is the assumption of homogeneity of variances and covariances that is often made in discriminant analysis and some kinds of clustering. In principle, the assumption of homogeneity of variances and covariances is not necessary in mixture modeling. The reason we will make the assumption here is that, for this example, the algorithm in Amos fails without that assumption. (It should be noted that the scatterplot in Example 34 suggests that the assumption is violated.) 547 Mixture Modeling without Training Data E Right-click PetalLength in the path diagram, choose Object Properties from the pop-up menu, and enter the parameter name, v1, in the Variance text box. While the Object Properties dialog is still open, click PetalWidth in the path diagram. E While the Object Properties dialog box is still open, click PetalWidth in the path diagram. E In the Object Properties dialog box, enter the parameter name, v2, in the Variance text box. E While the Object Properties dialog box is still open, click the double-headed arrow that represents the covariance between PetalLength and PetalWidth. 548 Example 35 E In the Object Properties dialog box, enter the parameter name, c12, in the Covariance text box. The path diagram should now look like the following figure. (This path diagram is saved as Ex35-a.amw.) Fitting the Model E Click on the toolbar. or E From the menus, choose Analyze > Bayesian Estimation. Note: The button is disabled because, in mixture modeling, you can perform only Bayesian estimation. 549 Mixture Modeling without Training Data After the Bayesian SEM window opens, wait until the unhappy face changes into a happy face . The table of estimates in the Bayesian SEM window should then look something like this: The Bayesian SEM window displays all of the parameter estimates that you would get in an ordinary three-group analysis. The table displays the estimates for one group at a time. You can switch from one group to another by clicking the tabs at the top of the table. In this example, the model parameters include only means, variances, and covariances. In a more complicated model, there would also be estimates of regression weights and intercepts. 550 Example 35 In a mixture modeling analysis, you also get an estimate of the proportion of the population that lies in each group. In the preceding figure, the proportion of setosa flowers in the population is estimated to be 0.306. E To view the posterior distribution of a population proportion, right-click the row that contains the proportion and choose Show Posterior from the pop-up menu. The graph of the posterior distribution in the Posterior window shows that the proportion of flowers that belong in Group number 1 is certainly between 0.15 and 0.45. There is a very high probability that the proportion is between 0.25 and 0.35. 551 Mixture Modeling without Training Data Classifying Individual Cases To obtain probabilities of group membership for each individual flower: E Click the Posterior Predictive button . or E From the menus, choose View > Posterior Predictive. For each flower, the Posterior Predictive Distributions window shows the probability that the value of the Species variable is Cluster1, Cluster2, or Cluster3. 552 Example 35 The first 50 cases, which we know to be examples of setosa, are placed in Group number 3 with a probability of 1, so Group number 3 clearly contains setosa flowers. Cases 51 through 100 fall mainly into Group number 2, so Group number 2 clearly contains versicolor flowers. Similarly, although the preceding figure does not show it, cases 101 through 150 are assigned mainly to Group number 1, so Group number 1 clearly contains virginica flowers. 553 Mixture Modeling without Training Data Latent Structure Analysis There is a variation of mixture modeling called latent structure analysis in which observed variables are required to be independent within each group. E To require that PetalLength and PetalWidth be uncorrelated and therefore (because they are multivariate normally distributed) independent, remove the double-headed arrow that connects them in the path diagram. The resulting path diagram is shown here. (This path diagram is saved as the file, Ex35-b.amw.) E Optionally, remove the constraints on the variances by deleting the parameter names, v1 and v2. (The resulting path diagram is saved as Ex35-c.amw.) E After deleting the double-headed arrow and possibly removing the constraints on the variances, click the Bayesian button to perform the latent structure analysis. The results of the latent structure analysis will not be reported here. 554 Example 35 Label Switching If you attempt to replicate the analysis in this example, it is possible that you will get the results that are reported here but with the group names permuted. The results reported here for Group number 1 might correspond to the results you get for Group number 2 or Group number 3. This is sometimes called label switching (Chung, Loken, and Schafer, 2004). Label switching is not really a problem unless it occurs during the course of a single analysis. Unfortunately, label switching can in fact occur in the middle of an analysis. When label switching occurs, it is usually revealed by trace plots for individual parameters. To display a trace plot during Bayesian estimation: E Right-click a parameter in the Bayesian SEM window and choose Show Posterior from the pop-up menu. E In the Posterior window, select Trace. Label switching did not occur in the analysis of the present example. The following figure, from another analysis, shows a trace plot that is typical of label switching. This trace plot came from an analysis of data with two clusters of cases. In one cluster, the mean of a variable called X was about 4. In the other cluster, the mean of the X variable was about 17. The trace plot shows that, in the group called Group number 1, the sampled values of the mean of X stayed close to 4 most of the time until about the 5,000-th iteration of the MCMC algorithm. At about the 5,000-th iteration, sampled values started fluctuating around 17. This abrupt shift in the trace plot is evidence that the group labels (Group number 1 and Group number 2) were switched at about the 5,000-th iteration. The trace plot shows that this label switching occurred several times during the first 20,000 iterations of the MCMC algorithm. 555 Mixture Modeling without Training Data Label switching can be revealed by a multi-model posterior distribution for one or more parameters. The preceding trace plot corresponds to the following posterior distribution estimate. The preceding graph shows that the mean of a parameter’s posterior distribution may not be a meaningful estimate in a mixture modeling analysis when label switching occurs. Some methods for preventing label switching have been proposed (Celeux, Hurn, and Robert, 2000; Frühwirth-Schnatter, 2004; Jasra, Holmes, and Stephens, 2005; Stephens, 2000). Chung, Loken, and Schafer (2004) suggest that pre-assigning even one or two cases to groups can be effective in eliminating label switching. Amos allows pre-assigning cases to groups, as shown in Example 34. Amos 21 does not implement any other method for preventing label switching. Example 36 Mixture Regression Modeling Introduction Mixture regression modeling (Ding, 2006) is appropriate when you have a regression model that is incorrect for an entire population, but where the population can be divided into subgroups in such a way that the regression model is correct in each subgroup. About the Data Two artificial datasets will be used to explain mixture regression. First Dataset The following dataset is in the file DosageAndPerformance1.sav. Dosage is the intensity of some treatment. Performance is just some performance measure. Group is a string (non-numeric) variable whose role in mixture regression analysis will be explained later. 557 558 Example 36 A scatterplot of dosage and performance shows two distinct groups of people in the sample. In one group, performance improves as dosage goes up. In the other group, performance gets worse as dosage goes up. performance 20.00 10.00 0.00 $$ $$ $ $ $ $ $$$$$$$$$ $$ $ $ $$$ $ $ $ $ $ $$$$$$$ $ $$ $ $$ $ $$ $ $ $ $ $ $$$$$$ $ $$$$ $ $ $$$$$$$$$$ $$ $$$$ $$$$$ $$$$$ $$ $$$$$$ $ $ $$$$$$ $$$$$$$ $$$ $$ $$$$ $ $ $$$$$$$ $ $ $ $$$$ $ $$$$ $$$$$ $ $ $ $$ $$$$$$$$$$$$$$$$ $$$$$$ $ $ $ $$$$$$$$$$ $$$$ $$ $ $$ $$ $$$$$$$$$$$ $$ $$ $$$$$$$ $$$$ $$$$ $$$$ $ $ $ $ $ $ $ $$$$$$$$$$$$ $ $$$$$$$$$$$ $ $ $$$$$ $ $$$$$$$ $ $$$$$$$$$$$ $ $ $$$$ $$ $$$$$$$ $$ $ $ $ $$$$ $ $$$ $ $$$$$ $ $$$$$$$ $$$$$$$$$ $ $ $ $ $ $ $ $ $$$$ $$ $ $$$$$$$$ $ $ $$$ $$ $$ $ $ $$ $ $ $$$$$$$$$ $ $ $ $ $$$ $$$$ $ $ $ $ $ $ $ $ $ $ $$$ $$$ $ $ $ $ $ $ $ $ $$$$$$ $$ $$$$$$$$$$$$$$$$$$$ $ $ $ $ $ $$$$$$$$$$$$$$$$$$$$ $$$ $$ $$$$$ $ $$$$$$$ $$$$$$ $ $ $ $$ $$ $$$$ $$$$ $$$$ $$$ $$$$$ $$$ $ $$$$$ $ $$$$ $$$ $ $$ $ $$$ $$$ $$$$$$$ $$ $ $$$$$$$ $$$$$$ $$$ $$ $ $ $$$$$ $ $ $ $ $$$$ $ $$$$$$ $$ $$$$$ $ $ $ $ $$$$$$$$$$$$$ $$ $ $ $ $ $ $ $ $$$$$ $ $$ $$$$$$$$ $$ $$$$$$ $ $ $ $$$$$$$$$$$$$$$$ $$$$ $ $$ $ $ $ $ $$$ $ $ $$ $ $$$ $$$$$$$$ $ $ $$ $$ $ $ $ $$$ $ $ $ $ $ $ -2.00 0.00 2.00 dosage 4.00 6.00 559 Mixture Regression Modeling It would be a mistake to try to fit a single regression line to the whole sample. On the other hand, two straight lines, one for each group, would fit the data well. This is a job for mixture regression modeling. A mixture regression analysis would attempt to divide the sample up into groups and to fit a separate regression line to each group. Second Dataset The following dataset, in the file DosageAndPerformance2.sav, also contains data on the variables dosage, performance, and group. Again, a scatterplot of the data shows evidence of two groups, with each group requiring its own regression line. In either group by itself, an increase of one unit in dosage is associated with an increase of about two units in performance, so that the slope of the regression line is about 2 within each group. On the other hand, the two groups have different intercepts. At any particular dosage level, performance is 5 points or so higher in one group than in the other. A mixture regression analysis of this dataset would attempt to divide the sample up into groups and to fit a separate regression line to each group. 560 Example 36 $$ $ $ $ $ $$ $$ $ $ $$ $ $ $ $$$ $ $ $ $ $ $$$$$ $ $ $ $$ $$ $$ $ $ $ $$ $ $$$$ $$ $ $ $$$ $$ $$$ $ $ $ $ $ $ $ $ $ $$$ $$$ $ $$ $$ $ $$$ $ $$ $ $$$$ $$ $ $ $ $$$ $ $$$ $ $$$$ $ $ $$$$$$ $ $ $ $ $ $ $ $ $$$$$$$ $ $$ $ $$$ $$$ $ $$$ $$$$ $$$$ $$$ $$ $ $$$$$$ $$$$ $ $$$ $ $ $ $ $$$$$$ $ $$$ $$$$$$$ $$$$$$ $ $ $$$$$$$ $$ $$$ $ $$$$$ $ $$$$$$ $$$$$$ $$ $ $ $$$$$$ $ $ $ $ $ $ $ $ $$$$$ $$ $$ $ $$ $$$ $ $$$ $$ $ $$$$ $ $ $$ $$$$$$$$$$$$ $ $$$$ $$$$$ $ $$ $$$$$$$ $ $$$$ $$$$$ $ $ $ $ $ $$$$ $$ $ $ $ $ $$ $$$ $$$ $$ $ $$$ $$ $ $ $ performance 25.00 20.00 15.00 10.00 5.00 $ $ 0.00 5.00 10.00 dosage The Group Variable in the Dataset Both of the datasets just described include a string (non-numeric) variable called group that contains no data. In a mixture regression analysis, Amos will use the group variable to classify individual cases. (The fact that the variable is called group is not important. Any variable name will do; however, it does have to be a string variable.) If some cases have already been assigned to groups before the analysis starts, you can put the group names in the group column of the dataset. For example, if you know ahead of time (before the mixture regression analysis starts) that the sample contains high performers and low performers and you know that the first two people in the sample are high performers and that the next three people are low performers, then you can enter that information in the group column of the data table in the following way: 561 Mixture Regression Modeling The program will then use the five cases that have been pre-classified to assist in classifying the remaining cases. Pre-assigning selected individual cases to groups is mentioned here only as a possibility. In the present example, no cases will be preassigned to groups. Performing the Analysis Only the DosageAndPerformance2.sav dataset will be analyzed in this example. E From the menus, choose File > New to start a new path diagram. E From the menus, choose Analyze > Manage Groups. 562 Example 36 E Click New to create a second group. E Click Close. This example fits a two-group mixture regression model. When you aren’t sure how many groups there are, you can run the program multiple times. Run the program once to fit a two-group model, then again to fit a three-group model, and so on. 563 Mixture Regression Modeling Specifying the Data File E From the menus, choose File > Data Files. E Click Group number 1 to select that row. E Click File Name, select the DosageAndPerformance2.sav file that is in the Amos Examples directory, and click Open. E Click Grouping Variable and double-click group in the Choose a Grouping Variable dialog box. This tells the program that the variable called group will be used to distinguish one group from another. 564 Example 36 E Repeat the preceding steps for Group number 2, specifying the same data file (DosageAndPerformance2.sav) and the same grouping variable (group). 565 Mixture Regression Modeling E Select Assign cases to groups (a check mark will appear next to it). So far, this has been just like any ordinary multiple-group analysis except for the check mark next to Assign cases to groups. That check mark turns this into a mixture 566 Example 36 modeling analysis. The check mark tells Amos to assign a case to a group if the grouping variable in the data file does not already assign it to a group. Notice that it was not necessary to click Group Value to specify a value for the grouping variable. The data file contains no values for the grouping variable (group), so the program automatically constructed values for the group variable: Cluster1 for cases in Group number 1, and Cluster2 for cases in Group number 2. E Click OK to close the Data Files dialog box. Specifying the Model E Draw a path diagram for the regression model, as follows. (This path diagram is saved as Ex36-a.amw.) E From the menus, choose View > Analysis Properties. E Select Estimate means and intercepts (a check mark will appear next to it). 567 Mixture Regression Modeling Fitting the Model E Click on the toolbar. or E From the menus, choose Analyze > Bayesian Estimation. Note: The button is disabled because, in mixture modeling, you can perform only Bayesian estimation. 568 Example 36 After the Bayesian SEM window opens, wait until the unhappy face changes into a happy face . The table of estimates in the Bayesian SEM window should then look something like this: The Bayesian SEM window contains all of the parameter estimates that you would get in an ordinary multiple-group regression analysis. There is a separate table of estimates for each group. You can switch from group to group by clicking the tabs just above the table of estimates. 569 Mixture Regression Modeling The bottom row of the table contains an estimate of the proportion of the population that lies in an individual group. The preceding figure, which displays estimates for Group number 1, shows that the proportion of the population in Group number 1 is estimated to be 0.247. To see the estimated posterior distribution of that population proportion, right-click the proportion’s row in the table and choose Show Posterior from the pop-up menu. 570 Example 36 The graph in the Posterior window shows that the proportion of the population in Group number 1 is practically guaranteed to be somewhere between 0.15 and 0.35. Let’s compare the regression weight and the intercept in Group number 1 with the corresponding estimates in Group number 2. In Group number 1, the regression weight estimate is 2.082 and the intercept estimate is 5.399. In Group number 2, the regression weight estimate (1.999) is about the same as in Group number 1 while the intercept estimate (9.955) is substantially higher than in Group number 1. 571 Mixture Regression Modeling 572 Example 36 Classifying Individual Cases To obtain probabilities of group membership for each individual case: E Click the Posterior Predictive button . or E From the menus, choose View > Posterior Predictive. For each case, the Posterior Predictive Distributions window shows the probability that the group variable takes on the value Cluster1 or Cluster2. Case 1 is estimated to have a 0.88 probability of being in Group number 1 and a 0.12 probability of being in Group number 2. Recall that the first group has an intercept of about 5.399 while the second group has an intercept of about 9.955, so Group number 1 is the low performing group. Therefore, there is an 88 percent chance that the first person in the sample is in the low performing group and a 12 percent chance that that person is in the high performing group. 573 Mixture Regression Modeling Improving Parameter Estimates You can improve the parameter estimates (and also improve Amos’s ability to form clusters) by reducing the number of parameters that need to be estimated. As we have seen, the slope of the regression line is about the same for the two groups. Also, the variability about each regression line appears to be about the same for the two groups. It is possible to incorporate into the mixture modeling analysis the hypothesis that the slopes and the error variances are the same for the two groups, thereby reducing the number of distinct parameters to be estimated. To do this: E On the path diagram, right-click the single-headed arrow that connects dosage and performance, choose Object Properties from the pop-up menu, and enter the parameter name, b, in the Regression weight text box. E While the Object Properties dialog box is still open, click E1 in the path diagram. E In the Object Properties dialog box, enter the parameter name, v, in the Variance text box. 574 Example 36 The path diagram should now look like the following figure. (This path diagram is saved as Ex36-b.amw.) After constraining the slope and error variance to be the same for the two groups, you can repeat the mixture modeling analysis by clicking the Bayesian button . The results of that analysis will not be presented here. 575 Mixture Regression Modeling Prior Distribution of Group Proportions For the prior distribution of group proportions, Amos uses a Dirichlet distribution with parameters that you can specify. By default, the Dirichlet parameters are 4, 4, …. E To specify the Dirichlet parameters, right-click on a group proportion’s estimate in the Bayesian SEM window and choose Show Prior from the pop-up menu. 576 Example 36 Label Switching It is possible that the results reported here for Group number 1 will match the results that you get for Group number 2, and that the results reported here for Group number 2 will match those that you get for Group number 1. In other words, your results may match the results reported here, but with the group names reversed. This is sometimes called label switching (Chung, Loken, and Schafer, 2004). Label switching is discussed further at the end of Example 35. Example 37 Using Amos Graphics without Drawing a Path Diagram Introduction People usually specify models in Amos Graphics by drawing path diagrams; however, Amos Graphics also provides a non-graphical method for model specification. If you don't want to draw a path diagram, you can specify a model by entering text in the form of a Visual Basic or C# program. In such a program, each object in a path diagram (for example, each rectangle, ellipse, single-headed arrow, double-headed arrow, and figure caption) corresponds to a single program statement. Usually, a program statement is one line of text. Here are some reasons why you might choose to specify a model by entering text rather than by drawing a path diagram. Your model is so big that drawing its path diagram would be difficult. You prefer using a keyboard to using a mouse, or prefer working with text to working with graphics. You need to generate a lot of similar models that differ only in some detail such as the number of variables or the variable names. If you need to generate such models frequently, it can be efficient to automate the chore by creating a super program whose text output is a tailor-made Visual Basic or C# program that specifies the particular model that you want Amos to fit. The present example shows how to specify a model in Amos Graphics by entering text rather than by drawing a path diagram. 577 578 Example 37 About the Data The Holzinger and Swineford (1939) dataset from Example 8 is used for this example. A Common Factor Model The factor analysis model from Example 8 is used for this example. Whereas the model was specified in Example 8 by drawing its path diagram, the same model will be specified in the current example by writing a Visual Basic program. Creating a Plugin to Specify the Model E From the menus, choose Plugins > Plugins. E In the Plugins dialog box, click Create. 579 Using Amos Graphics without Drawing a Path Diagram The Program Editor window opens. E In the Program Editor window, change the Name and Description functions so that they return meaningful strings. You may find it helpful at this point to refer to the first path diagram in Example 8. We are going to add one line to the Mainsub function for each rectangle, ellipse and arrow in the path diagram. 580 Example 37 E In the Program Editor, enter the line pd.Observed("visperc") as the first line in the Mainsub function. If you save the plugin now, you can use it later on to draw a rectangle representing a variable called visperc. The rectangle will be drawn with arbitrary height and width at a random location in the path diagram. You can specify its height, width and location. For example, pd.Observed("visperc", 400, 300, 200, 100) draws a rectangle for a variable called visperc. The rectangle will be centered 400 logical pixels from the left edge of the path diagram, 300 logical pixels from the top edge. It will be 200 logical pixels wide and 100 logical pixels high. (A logical pixel is 1/96 of an inch.) The online help gives other variations of the Observed method. In this example, we will not specify the height, width or location of any path diagram objects. 581 Using Amos Graphics without Drawing a Path Diagram E Enter the following additional lines in the Mainsub function so that the plugin will draw five more rectangles for the five remaining observed variables: pd.Observed("cubes") pd.Observed("lozenges") pd.Observed("paragrap") pd.Observed("sentence") pd.Observed("wordmean") E Enter the following lines so that the plugin will draw eight ellipses for the eight unobserved variables: pd.Unobserved("err_v") pd.Unobserved("err_c") pd.Unobserved("err_l") pd.Unobserved("err_p") pd.Unobserved("err_s") pd.Unobserved("err_w") pd.Unobserved("spatial") pd.Unobserved("verbal") 582 Example 37 E Enter the following lines so that the plugin will draw the 12 single-headed arrows: pd.Path("visperc", "spatial", 1) pd.Path("cubes", "spatial") pd.Path("lozenges", "spatial") pd.Path("paragrap", "verbal", 1) pd.Path("sentence", "verbal") pd.Path("wordmean", "verbal") pd.Path("visperc", "err_v", 1) pd.Path("cubes", "err_c", 1) pd.Path("lozenges", "err_l", 1) pd.Path("paragrap", "err_p", 1) pd.Path("sentence", "err_s", 1) pd.Path("wordmean", "err_w", 1) Notice that in some of the lines above, the Path method has a third argument that is set equal to 1. This is how you fix a regression weight to a constant value of 1. See the online help for other variations of the Path method. E Enter the following line so that the plugin will draw the double-headed arrow: pd.Cov("spatial", "verbal") E Enter the following line to reposition the objects in the path diagram so as to improve its appearance: pd.Reposition() As mentioned above, the simple forms of the Observed, Unobserved and Caption methods that are used in this example place objects at random positions in the path diagram. The Reposition method attempts to make the path diagram look better by rearranging objects. The Reposition method does not produce path diagrams of presentation quality. Far from it, in fact. On the other hand, Reposition usually improves a path diagram’s appearance substantially. In order to get objects in the path diagram sized and positioned exactly the way you want, you can use one of the following approaches. 583 Using Amos Graphics without Drawing a Path Diagram E Specify a height, width and location each time you use the Observed, Unobserved and Caption methods of the pd class. (See the online help for the Observed, Unobserved and Caption methods.) or E In your plugin, use the Reposition method to improve the positioning of objects. After running the plugin, use the drawing tools in the Amos Graphics toolbox to interactively move and resize the objects in the path diagram. Controlling Undo Capability E Enter the following line as the first line in the Mainsub function: pd.UndoToHere E Enter the following line as the last line in the Mainsub function: pd.UndoResume The UndoToHere method and the UndoResume method work together to ensure that the effect of running the plugin can be undone by one click of the Undo button. 584 Example 37 The Mainsub function now looks like this in the Program Editor: 585 Using Amos Graphics without Drawing a Path Diagram This completes the plugin for specifying the factor analysis model from Example 8. You can find a pre-written copy of the plugin in a file called Ex37a-plugin.vb located in a subfolder of Amos’s plugins folder. If you performed a typical installation of Amos, Ex37a-plugin.vb is in the location: C:\Program Files\IBM\SPSS\Amos\21\Plugins\ . Compiling and Saving the Plugin E Click Compile in the Program Editor window. Any compilation errors will be displayed on the Compile errors tab of the Program Editor window. E After you fix any compilation errors, click Close in the Program Editor window. You will be asked if you want to save the file: E Click Yes . The Save As dialog box will be displayed. E In the Save As dialog box, type a filename for your plugin and click Save. Your plugin must be saved in the Save As dialog’s default folder location. In a typical Amos installation, that folder location is C:\Program Files\IBM\SPSS\Amos\21\Plugins. 586 Example 37 After you have saved your plugin, its name, Example 37a, appears on the list of plugins in the Plugins window. (Recall that Example 37a is the string returned by the plugin’s Name function.) E Close the Plugins window. Using the Plugin E From the menus, choose File > New to start with an empty path diagram. If you are asked whether you want to save your work, choose either Yes or No: E From the menus, choose Plugins > Example 37a. The plugin generates the model’s path diagram, which is then displayed in the path diagram window. The following path diagram was generated during the preparation of this example. (You will almost 587 Using Amos Graphics without Drawing a Path Diagram certainly get a different path diagram because a random number generator plays a role in positioning the elements in the path diagram.) 588 Example 37 Other Aspects of the Analysis in Addition to Model Specification In Example 8, the data file Grnt_fem.sav was specified interactively (by choosing File > Data Files on the menus). You can do the same thing here as well. As an alternative, you can specify the Grnt_fem.sav data file within the plugin by adding the following lines to the Mainsub function: pd.SetDataFile(1, MiscAmosTypes.cDatabaseFormat.mmSPSS, _ "C:\Program Files\IBM\SPSS\Amos\21\Examples\English\grnt_fem.sav", "", "", "") Similarly, in Example 8, standardized estimates were requested interactively (by choosing View > Analysis Properties on the menus). As an alternative to requesting standardized estimates interactively, you can request them within a plugin by adding the following line to the Mainsub function: pd.GetCheckBox("AnalysisPropertiesForm", "StandardizedCheck").Checked = True Generally, any aspect of an analysis that can be specified interactively can be specified within a plugin by using the methods and properties of the pd class. Defining Program Variables that Correspond to Model Variables There are five pd methods that create an object in a path diagram: Observed, Unobserved, Path, Cov and Caption. Each of these methods returns a reference to the object that it creates. For example, the Observed method creates an observed variable in the path diagram and also returns a reference to that observed variable. Instead of writing the lines pd.Observed("wordmean") pd.Unobserved("verbal") to create an observed variable called wordmean and an unobserved variable called verbal, you can write the following lines (in Visual Basic): Dim wordmean As PDElement = pd.Observed("wordmean") Dim verbal As PDElement = pd.Unobserved("verbal") 589 Using Amos Graphics without Drawing a Path Diagram Then you can use the program variable wordmean to refer to the model variable called wordmean, and use the program variable verbal to refer to the model variable called verbal. If you want to draw a single-headed arrow from the verbal variable to the wordmean variable, you can write either pd.Path(wordmean, verbal) or pd.Path(“wordmean”, "verbal") The advantage of the unquoted version over the quoted version is that, with the unquoted version, typing errors are likely to be detected when you compile the plugin (by clicking Compile in the Program Editor window). With the quoted version, typing errors cannot be detected until you use the plugin, if they are detected at all. The file Ex37b-plugin.vb contains a plugin that has the same functionality as Ex37aplugin.vb. The difference is that Ex37b-plugin.vb uses Visual Basic variables to refer to model variables. If you performed a typical installation of Amos, Ex37b-plugin.vb is in this location: C:\Program Files\IBM\SPSS\Amos\21\Plugins. Appendix A Notation q = the number of parameters γ = the vector of parameters (of order q) G = the number of groups N (g) = the number of observations in group g G N = ∑N (g) = the total number of observations in all groups combined g=1 p p (g) = the number of observed variables in group g *(g) = the number of sample moments in group g. When means and intercepts are explicit model parameters, the relevant sample moments are means, (g) (g) (g) variances, and covariances, so that p * = p ( p + 3 ) ⁄ 2. Otherwise, only sample variances and covariances are counted so that (g) (g) (g) p * = p ( p + 1 ) ⁄ 2. G p = ∑p *(g) = the number of sample moments in all groups combined g=1 d = p – q = the number of degrees of freedom for testing the model (g) x ir = the r-th observation on the i-th variable in group g (g) xr = the r-th observation in group g S (g) = the sample covariance matrix for group g 591 592 Appendix A (g) Σ ( γ ) = the covariance matrix for group g, according to the model (g) μ ( γ ) = the mean vector for group g, according to the model (g) = the population covariance matrix for group g (g) = the population mean vector for group g Σ0 μ0 s (g) (g) = vec ( S ) = the p * vector (g) distinct elements of S (g) arranged in a single column (g) σ ( γ ) = vec ( Σ ( g ) ( γ ) ) r = the non-negative integer specified by the ChiCorrect method. By default r = G. When the Emulisrel6 method is used, r = G and cannot be changed by using ChiCorrect. n=N–r a = the vector of order p containing the sample moments for all groups; that is, a (1) (G) contains the elements of S , …, S and also (if means and intercepts are (1) (G) explicit model parameters) x , …, x . ␣ 0 = the vector of order p containing the population moments for all groups; that is, (1) (G) ␣ 0 contains the elements of Σ 0 , …, Σ 0 and also (if means and intercepts (1) (G) are explicit model parameters) μ 0, …, μ 0 . The ordering of the elements of ␣ ( γ ) must match the ordering of the elements of a. ␣ ( γ ) = the vector of order p containing the population moments for all groups according to the model; that is, ␣ ( γ ) contains the elements of (1) (G) Σ ( γ ), …, Σ ( γ ) and also (if means and intercepts are explicit model (1) (G) parameters) μ ( γ ), …, μ ( γ ). The ordering of the elements of ␣ ( γ ) must match the ordering of the elements of a. F ( ␣ ( γ ), a ) = the function (of ␥) that is minimized in fitting the model to the sample γˆ = the value of ␥ that minimizes F ( ␣ ( γ ), a ) ˆ (g) (g) Σ = Σ ( γˆ ) (g) (g) μˆ = μ ( γˆ ) ˆ = ␣ ( γˆ ) ␣ Appendix B Discrepancy Functions Amos minimizes discrepancy functions (Browne, 1982, 1984) of the form: (D1) ⎛ G (g ) ⎜ ∑ N f μ ( g ) , Σ( g );x ( g ) , S ( g ) g =1 C (α ,a ) = [N − r ]⎜⎜ N ⎜⎜ ⎝ ( )⎞⎟ ⎟ = [N − r ]F (α ,a ) ⎟ ⎟⎟ ⎠ Different discrepancy functions are obtained by changing the way f is defined. If means and intercepts are unconstrained and do not appear as explicit model (g) (g) (g) (g) parameters, x and μ will be omitted and f will be written f ( Σ ; S ) . The discrepancy functions C KL and F KL are obtained by taking f to be: ( )( −1 −1 ′ f KL μ ( g ) , Σ ( g ); x (g ) , S (g ) = log Σ (g ) + tr S (g )Σ (g ) + x ( g ) − μ (g ) Σ ( g ) x ( g ) − μ (g ) ( ) ) ( ) Except for an additive constant that depends only on the sample size, f KL is –2 times the Kullback-Leibler information quantity (Kullback and Leibler, 1951). Strictly speaking, C KL and F KL do not qualify as discrepancy functions according to Browne’s definition because F KL ( a, a ) ≠ 0. For maximum likelihood estimation (ML), C ML , and F ML are obtained by taking f to be: 593 594 Appendix B (D2) ( ) ( ) ( ) f ML μ (g ) , Σ (g ); x ( g ) , S ( g ) = f KL μ (g ) , Σ (g ); x (g ) , S ( g ) − f KL x (g ) , S ( g ); x (g ) , S (g ) −1 −1 ′ = log Σ ( g ) + tr S ( g )Σ (g ) − log S ( g ) − p (g ) + x (g ) − μ ( g ) Σ (g ) x (g ) − μ (g ) . ( ) ( ( ) ) For generalized least squares estimation (GLS), C GLS , and F GLS are obtained by taking f to be: (D3) ( [ ) ( f GLS Σ (g );S (g ) = 12 tr S (g ) S (g ) − Σ (g ) −1 )] 2 For asymptotically distribution-free estimation (ADF), C ADF , and F ADF are obtained by taking f to be: (D4) G −1 ′ f ADF Σ ( g );S ( g ) =∑ s (g )−σ ( g ) ( γ ) U (g ) s ( g )−σ ( g ) ( γ ) ) [ ( ] g =1 where the elements of U (g) x 1 = Ng w wij( g,kl) = 1 Ng Ng ∑ (x (g) ir r =1 ] are given by Browne (1984, Equations 3.1–3.4): (g) i (g) ij [ 1 = Ng Ng ∑ (x (g) ir r =1 )( Ng ∑x (g) ir r =1 )( ) )( )( − xi( g ) x (jrg ) − x (j g ) − xi( g ) x (jrg ) − x (j g ) xkr( g ) − xk( g ) xlr( g ) − xl( g ) ) 595 Discrepancy Functions [U ( ) ] g ij , kl =wij( g,kl) − wij( g ) wkl( g ) For scale-free least squares estimation (SLS), C SLS , and F SLS are obtained by taking f to be: (D5) ( [ ) ( f SLS Σ ( g );S ( g ) = 12 tr D(g ) S (g ) − Σ (g ) where D ( g) −1 )] 2 (g) = diag(S ). For unweighted least squares estimation (ULS), C ULS , and F ULS are obtained by taking f to be: (D6) ( ) [ fULS Σ ( g );S ( g ) = 12 tr S ( g ) − Σ ( g ) ] 2 The Emulisrel6 method in Amos can be used to replace (D1) with: (D1a) G ( ) C = ∑ N (g ) − 1 F (g ) g =1 F is then calculated as F = C ⁄ ( N – G ). When G = 1 and r = 1, (D1) and (D1a) are equivalent, giving: ( ) C = N (1) − 1 F (1) = ( N − 1) F For maximum likelihood, asymptotically distribution-free, and generalized least squares estimation, both (D1) and (D1a) have a chi-square distribution for correctly specified models under appropriate distributional assumptions. Asymptotically, (D1) and (D1a) are equivalent; however, both formulas can exhibit some inconsistencies in finite samples. 596 Appendix B Suppose you have two independent samples and a model for each. Furthermore, suppose that you analyze the two samples simultaneously, but that, in doing so, you impose no constraints requiring any parameter in one model to equal any parameter in the other model. Then, if you minimize (D1a), the parameter estimates obtained from the simultaneous analysis of both groups will be the same as from separate analyses of each group alone. Furthermore, the discrepancy function (D1a) obtained from the simultaneous analysis will be the sum of the discrepancy functions from the two separate analyses. Formula (D1) does not have this property when r is nonzero. Using formula (D1) to do a simultaneous analysis of the two groups will give the same parameter estimates as two separate analyses, but the discrepancy function from the simultaneous analysis will not be the sum of the individual discrepancy functions. On the other hand, suppose you have a single sample to which you have fitted some model using Amos. Now suppose that you arbitrarily split the sample into two groups of unequal size and perform a simultaneous analysis of both groups, employing the original model for both groups and constraining each parameter in the first group to be equal to the corresponding parameter in the second group. If you have minimized (D1) in both analyses, you will get the same results in both. However, if you use (D1a) in both analyses, the two analyses will produce different estimates and a different minimum value for F. All of the inconsistencies just pointed out can be avoided by using (D1) with the choice r = 0, so that (D1) becomes: G C = ∑ N ( g )F ( g ) = N F g =1 Appendix C Measures of Fit Model evaluation is one of the most unsettled and difficult issues connected with structural modeling. Bollen and Long (1993), MacCallum (1990), Mulaik, et al. (1989), and Steiger (1990) present a variety of viewpoints and recommendations on this topic. Dozens of statistics, besides the value of the discrepancy function at its minimum, have been proposed as measures of the merit of a model. Amos calculates most of them. Fit measures are reported for each model specified by the user and for two additional models called the saturated model and the independence model. In the saturated model, no constraints are placed on the population moments. The saturated model is the most general model possible. It is a vacuous model in the sense that it is guaranteed to fit any set of data perfectly. Any Amos model is a constrained version of the saturated model. The independence model goes to the opposite extreme. In the independence model, the observed variables are assumed to be uncorrelated with each other. When means are being estimated or constrained, the means of all observed variables are fixed at 0. The independence model is so severely and implausibly constrained that you would expect it to provide a poor fit to any interesting set of data. It frequently happens that each one of the models that you have specified can be so constrained as to be equivalent to the independence model. If this is the case, the saturated model and the independence model can be viewed as two extremes between which your proposed models lie. For every estimation method except maximum likelihood, Amos also reports fit measures for a zero model, in which every parameter is fixed at 0. 597 598 Appendix C Measures of Parsimony Models with relatively few parameters (and relatively many degrees of freedom) are sometimes said to be high in parsimony, or simplicity. Models with many parameters (and few degrees of freedom) are said to be complex, or lacking in parsimony. This use of the terms simplicity and complexity does not always conform to everyday usage. For example, the saturated model would be called complex, while a model with an elaborate pattern of linear dependencies but with highly constrained parameter values would be called simple. While one can inquire into the grounds for preferring simple, parsimonious models (such as Mulaik, et al., 1989), there does not appear to be any disagreement that parsimonious models are preferable to complex ones. When it comes to parameters, all other things being equal, less is more. At the same time, well-fitting models are preferable to poorly fitting ones. Many fit measures represent an attempt to balance these two conflicting objectives—simplicity and goodness of fit. In the final analysis, it may be, in a sense, impossible to define one best way to combine measures of complexity and measures of badness-of-fit in a single numerical index, because the precise nature of the best numerical trade-off between complexity and fit is, to some extent, a matter of personal taste. The choice of a model is a classic problem in the two-dimensional analysis of preference. (Steiger, 1990, p. 179) NPAR NPAR is the number of distinct parameters (q) being estimated. For example, two regression weights that are required to be equal to each other count as one parameter, not two. Note: Use the \npar text macro to display the number of parameters in the output path diagram. DF DF is the number of degrees of freedom for testing the model df = d = p − q 599 Measures of Fit where p is the number of sample moments and q is the number of distinct parameters. Rigdon (1994a) gives a detailed explanation of the calculation and interpretation of degrees of freedom. Note: Use the \df text macro to display the degrees of freedom in the output path diagram. PRATIO The parsimony ratio (James, Mulaik, and Brett, 1982; Mulaik, et al., 1989) expresses the number of constraints in the model being evaluated as a fraction of the number of constraints in the independence model PRATIO = d di where d is the degrees of freedom of the model being evaluated and d i is the degrees of freedom of the independence model. The parsimony ratio is used in the calculation of PNFI and PCFI (see “Parsimony Adjusted Measures” on p. 612). Note: Use the \pratio text macro to display the parsimony ratio in the output path diagram. Minimum Sample Discrepancy Function The following fit measures are based on the minimum value of the discrepancy. CMIN CMIN is the minimum value, Cˆ , of the discrepancy, C (see Appendix B). ˆ of the discrepancy Note: Use the \cmin text macro to display the minimum value C function C in the output path diagram. P P is the probability of getting as large a discrepancy as occurred with the present sample (under appropriate distributional assumptions and assuming a correctly 600 Appendix C specified model). That is, P is a “p value” for testing the hypothesis that the model fits perfectly in the population. One approach to model selection employs statistical hypothesis testing to eliminate from consideration those models that are inconsistent with the available data. Hypothesis testing is a widely accepted procedure, and there is a lot of experience in its use. However, its unsuitability as a device for model selection was pointed out early in the development of analysis of moment structures (Jöreskog, 1969). It is generally acknowledged that most models are useful approximations that do not fit perfectly in the population. In other words, the null hypothesis of perfect fit is not credible to begin with and will, in the end, be accepted only if the sample is not allowed to get too big. If you encounter resistance to the foregoing view of the role of hypothesis testing in model fitting, the following quotations may come in handy. The first two predate the development of structural modeling and refer to other model fitting problems. The power of the test to detect an underlying disagreement between theory and data is controlled largely by the size of the sample. With a small sample an alternative hypothesis which departs violently from the null hypothesis may still have a small probability of yielding a significant value of χ2 . In a very large sample, small and unimportant departures from the null hypothesis are almost certain to be detected. (Cochran, 1952) If the sample is small, then the χ2 test will show that the data are ‘not significantly different from’ quite a wide range of very different theories, while if the sample is large, the χ2 test will show that the data are significantly different from those expected on a given theory even though the difference may be so very slight as to be negligible or unimportant on other criteria. (Gulliksen and Tukey, 1958, pp. 95–96) Such a hypothesis [of perfect fit] may be quite unrealistic in most empirical work with test data. If a sufficiently large sample were obtained this χ2 statistic would, no doubt, indicate that any such non-trivial hypothesis is statistically untenable. (Jöreskog, 1969, p. 200) ...in very large samples virtually all models that one might consider would have to be rejected as statistically untenable.... In effect, a nonsignificant chi-square value is desired, and one attempts to infer the validity of the hypothesis of no difference between model and data. Such logic is well-known in various statistical guises as attempting to prove the null hypothesis. This procedure cannot generally be justified, since the chi-square variate v can be made small by simply reducing sample size. (Bentler and Bonett, 1980, p. 591) 601 Measures of Fit Our opinion...is that this null hypothesis [of perfect fit] is implausible and that it does not help much to know whether or not the statistical test has been able to detect that it is false. (Browne and Mels, 1992, p. 78). See also “PCLOSE” on p. 605. Note: Use the \p text macro for displaying this p value in the output path diagram. CMIN/DF CMIN/DF is the minimum discrepancy, Cˆ , (see Appendix B) divided by its degrees of freedom. Cˆ d Several writers have suggested the use of this ratio as a measure of fit. For every estimation criterion except for ULS and SLS, the ratio should be close to 1 for correct models. The trouble is that it isn’t clear how far from 1 you should let the ratio get before concluding that a model is unsatisfactory. Rules of Thumb ...Wheaton et al. (1977) suggest that the researcher also compute a relative chisquare (χ2 ⁄ df).... They suggest a ratio of approximately five or less ‘as beginning to be reasonable.’ In our experience, however, χ2 to degrees of freedom ratios in the range of 2 to 1 or 3 to 1 are indicative of an acceptable fit between the hypothetical model and the sample data. (Carmines and McIver, 1981, p. 80) ...different researchers have recommended using ratios as low as 2 or as high as 5 to indicate a reasonable fit. (Marsh and Hocevar, 1985). ...it seems clear that a χ2 ⁄ df ratio > 2.00 represents an inadequate fit. (Byrne, 1989, p. 55). Note: Use the \cmindf text macro to display the value of CMIN/DF in the output path diagram. 602 Appendix C FMIN FMIN is the minimum value, Fˆ , of the discrepancy, F (see Appendix B). Note: Use the \fmin text macro to display the minimum value Fˆ of the discrepancy function F in the output path diagram. Measures Based On the Population Discrepancy Steiger and Lind (1980) introduced the use of the population discrepancy function as a measure of model adequacy. The population discrepancy function, F 0 , is the value of the discrepancy function obtained by fitting a model to the population moments rather than to sample moments. That is, F 0 = min [ F ( α( γ ) ,α0 ) ] γ in contrast to Fˆ = min [ F ( α( γ ) ,a ) ] γ ˆ = nFˆ Steiger, Shapiro, and Browne (1985) showed that, under certain conditions, C has a noncentral chi-square distribution with d degrees of freedom and noncentrality parameter δ = C = nF . The Steiger-Lind approach to model evaluation centers around the estimation of F 0 and related quantities. This section of the User’s Guide relies mainly on Steiger and Lind (1980) and Steiger, Shapiro, and Browne (1985). The notation is primarily that of Browne and Mels (1992). NCP NCP = max(Cˆ – d, 0) is an estimate of the noncentrality parameter, δ = C 0 = nF 0 . The columns labeled LO 90 and HI 90 contain the lower limit ( δL ) and upper limit ( δU ) of a 90% confidence interval, on δ. δL is obtained by solving ( ) Φ Cˆ δ , d = .95 603 Measures of Fit for δ , and δU is obtained by solving ( ) Φ Cˆ | δ , d = .05 for δ , where Φ(x δ, d) is the distribution function of the noncentral chi-squared distribution with noncentrality parameter δ and d degrees of freedom. Note: Use the \ncp text macro to display the value of the noncentrality parameter estimate in the path diagram, \ncplo to display the lower 90% confidence limit, and \ncphi for the upper 90% confidence limit. F0 Cˆ – d NCP δ F0 = Fˆ 0 = max ⎛ -------------, 0⎞ = ----------- is an estimate of --- = F 0 . ⎝ n ⎠ n n The columns labeled LO 90 and HI 90 contain the lower limit and upper limit of a 90% confidence interval for F 0 . LO 90 = HI 90 = δL n δU n Note: Use the \f0 text macro to display the value of Fˆ 0 in the output path diagram, \f0lo to display its lower 90% confidence estimate, and \f0hi to display the upper 90% confidence estimate. RMSEA F 0 incorporates no penalty for model complexity and will tend to favor models with many parameters. In comparing two nested models, F 0 will never favor the simpler model. Steiger and Lind (1980) suggested compensating for the effect of model complexity by dividing F 0 by the number of degrees of freedom for testing the model. Taking the square root of the resulting ratio gives the population root mean square 604 Appendix C error of approximation, called RMS by Steiger and Lind, and RMSEA by Browne and Cudeck (1993). population RMSEA = F0 d estimated RMSEA = Fˆ0 d The columns labeled LO 90 and HI 90 contain the lower limit and upper limit of a 90% confidence interval on the population value of RMSEA. The limits are given by LO 90 = HI 90 = δL n d δU n d Rule of Thumb Practical experience has made us feel that a value of the RMSEA of about 0.05 or less would indicate a close fit of the model in relation to the degrees of freedom. This figure is based on subjective judgment. It cannot be regarded as infallible or correct, but it is more reasonable than the requirement of exact fit with the RMSEA = 0.0. We are also of the opinion that a value of about 0.08 or less for the RMSEA would indicate a reasonable error of approximation and would not want to employ a model with a RMSEA greater than 0.1. (Browne and Cudeck, 1993) Note: Use the \rmsea text macro to display the estimated root mean square error of approximation in the output path diagram, \rmsealo for its lower 90% confidence estimate, and \rmseahi for its upper 90% confidence estimate. 605 Measures of Fit PCLOSE 2 PCLOSE = 1 – Φ( Cˆ .05 nd, d ) is a p value for testing the null hypothesis that the population RMSEA is no greater than 0.05. H 0 : RMSEA ≤ .05 By contrast, the p value in the P column (see “P” on p. 599) is for testing the hypothesis that the population RMSEA is 0. H 0 : RMSEA = 0 Based on their experience with RMSEA, Browne and Cudeck (1993) suggest that a RMSEA of 0.05 or less indicates a close fit. Employing this definition of close fit, PCLOSE gives a test of close fit while P gives a test of exact fit. Note: Use the \pclose text macro to display the p value for close fit of the population RMSEA in the output path diagram. Information-Theoretic Measures ˆ + kq or Fˆ + kq , where k is some positive Amos reports several statistics of the form C constant. Each of these statistics creates a composite measure of badness of fit ˆ or Fˆ ) and complexity (q) by forming a weighted sum of the two. Simple models (C that fit well receive low scores according to such a criterion. Complicated, poorly fitting models get high scores. The constant k determines the relative penalties to be attached to badness of fit and to complexity. The statistics described in this section are intended for model comparisons and not for the evaluation of an isolated model. All of these statistics were developed for use with maximum likelihood estimation. Amos reports them for GLS and ADF estimation as well, although it is not clear that their use is appropriate there. AIC The Akaike information criterion (Akaike, 1973, 1987) is given by AIC = Cˆ + 2q 606 Appendix C See also “ECVI” on p. 607. Note: Use the \aic text macro to display the value of the Akaike information criterion in the output path diagram. BCC The Browne-Cudeck (1989) criterion is given by G BCC = Cˆ + 2q ∑ b (g ) g =1 ( ) p (g ) p (g ) + 3 N (g ) − p (g ) − 2 ∑ p (g )(p (g ) + 3) G g =1 (g) N (g) (g) (g) where b = N – 1 if the Emulisrel6 command has been used, or b = n --------- if it N has not. BCC imposes a slightly greater penalty for model complexity than does AIC. BCC is the only measure in this section that was developed specifically for analysis of moment structures. Browne and Cudeck provided some empirical evidence suggesting that BCC may be superior to more generally applicable measures. Arbuckle (in preparation) gives an alternative justification for BCC and derives the above formula for multiple groups. See also “MECVI” on p. 608. Note: Use the \bcc text macro to display the value of the Browne-Cudeck criterion in the output path diagram. BIC The Bayes information criterion (Schwarz, 1978; Raftery, 1993) is given by the formula (1) BIC = Cˆ + q ln ( N ) In comparison to the AIC, BCC, and CAIC, the BIC assigns a greater penalty to model complexity and, therefore, has a greater tendency to pick parsimonious models. The BIC is reported only for the case of a single group where means and intercepts are not explicit model parameters. 607 Measures of Fit Note: Use the \bic text macro to display the value of the Bayes information criterion in the output path diagram. CAIC Bozdogan’s (1987) CAIC (consistent AIC) is given by the formula ( ) CAIC = Cˆ + q ln N (1) + 1 CAIC assigns a greater penalty to model complexity than either AIC or BCC but not as great a penalty as does BIC. CAIC is reported only for the case of a single group where means and intercepts are not explicit model parameters. Note: Use the \caic text macro to display the value of the consistent AIC statistic in the output path diagram. ECVI Except for a constant scale factor, ECVI is the same as AIC. ECVI = 1 (AIC) = Fˆ + 2q n n The columns labeled LO 90 and HI 90 give the lower limit and upper limit of a 90% confidence interval on the population ECVI: LO 90 = HI 90 = δ L + d + 2q n δ U + d + 2q n See also “AIC” on p. 605. Note: Use the \ecvi text macro to display the value of the expected cross-validation index in the output path diagram, \ecvilo to display its lower 90% confidence estimate, and \ecvihi for its upper 90% confidence estimate. 608 Appendix C MECVI Except for a scale factor, MECVI is identical to BCC. G MECVI = ∑ 1 (BCC) = Fˆ + 2q g =1 n a (g ) ( ) p ( g ) p (g ) + 3 N (g ) − p (g ) − 2 ∑ p (g )(p (g ) + 3) G g =1 where a has not. (g) (g) (g) (g) N –1 N = ------------------ if the Emulisrel6 command has been used, or a = --------- if it N–G N See also “BCC” on p. 606. Note: Use the \mecvi text macro to display the modified ECVI statistic in the output path diagram. Comparisons to a Baseline Model Several fit measures encourage you to reflect on the fact that, no matter how badly your model fits, things could always be worse. Bentler and Bonett (1980) and Tucker and Lewis (1973) suggested fitting the independence model or some other very badly fitting baseline model as an exercise to see how large the discrepancy function becomes. The object of the exercise is to put the fit of your own model(s) into some perspective. If none of your models fit very well, it may cheer you up to see a really bad model. For example, as the following output shows, Model A from Example 6 has a rather large discrepancy ( Cˆ = 71.544 ) in relation to its degrees of freedom. On the other hand, 71.544 does not look so bad compared to 2131.790 (the discrepancy for the independence model). 609 Measures of Fit Model NPAR CMIN DF P CMIN/DF Model A: No Autocorrelation Model B: Most General Model C: Time-Invariance Model D: A and C Combined Saturated model Independence model 15 16 13 12 21 6 71.544 6.383 7.501 73.077 0.000 2131.790 6 5 8 9 0 15 0.000 0.271 0.484 0.000 11.924 1.277 0.938 8.120 0.000 142.119 This things-could-be-much-worse philosophy of model evaluation is incorporated into a number of fit measures. All of the measures tend to range between 0 and 1, with values close to 1 indicating a good fit. Only NFI (described below) is guaranteed to be between 0 and 1, with 1 indicating a perfect fit. (CFI is also guaranteed to be between 0 and 1, but this is because values bigger than 1 are reported as 1, while values less than 0 are reported as 0.) The independence model is only one example of a model that can be chosen as the baseline model, although it is the one most often used and the one that Amos uses. Sobel and Bohrnstedt (1985) contend that the choice of the independence model as a baseline model is often inappropriate. They suggest alternatives, as did Bentler and Bonett (1980), and give some examples to demonstrate the sensitivity of NFI to the choice of baseline model. NFI The Bentler-Bonett (1980) normed fit index (NFI), or Δ1 in the notation of Bollen (1989b) can be written NFI = Δ1 = 1 − Cˆ Fˆ =1− Fˆ Cˆ b b ˆ = nFˆ is the minimum discrepancy of the model being evaluated and where C Cˆb = nFˆb is the minimum discrepancy of the baseline model. In Example 6, the independence model can be obtained by adding constraints to any of the other models. Any model can be obtained by constraining the saturated model. So Model A, for instance, with χ2 = 71.544, is unambiguously in between the perfectly fitting saturated model ( χ2 = 0 ) and the independence model ( χ2 = 2131.790 ). 610 Appendix C Model NPAR CMIN DF P CMIN/DF Model A: No Autocorrelation Model B: Most General Model C: Time-Invariance Model D: A and C Combined Saturated model Independence model 15 16 13 12 21 6 71.544 6.383 7.501 73.077 0.000 2131.790 6 5 8 9 0 15 0.000 0.271 0.484 0.000 11.924 1.277 0.938 8.120 0.000 142.119 Looked at in this way, the fit of Model A is a lot closer to the fit of the saturated model than it is to the fit of the independence model. In fact, you might say that Model A has a discrepancy that is 96.6% of the way between the (terribly fitting) independence model and the (perfectly fitting) saturated model. NFI = 2131.790 − 71.54 71.54 =1− = .966 2131.790 2131.790 Rule of Thumb Since the scale of the fit indices is not necessarily easy to interpret (e.g., the indices are not squared multiple correlations), experience will be required to establish values of the indices that are associated with various degrees of meaningfulness of results. In our experience, models with overall fit indices of less than 0.9 can usually be improved substantially. These indices, and the general hierarchical comparisons described previously, are best understood by examples. (Bentler and Bonett, 1980, p. 600, referring to both the NFI and the TLI) Note: Use the \nfi text macro to display the normed fit index value in the output path diagram. RFI Bollen’s (1986) relative fit index (RFI) is given by RFI = ρ1 = 1 − Cˆ d Fˆ d =1− Fˆb d b Cˆ b d b 611 Measures of Fit ˆ and d are the discrepancy and the degrees of freedom for the model being where C ˆ b and d b are the discrepancy and the degrees of freedom for the evaluated, and C baseline model. The RFI is obtained from the NFI by substituting F / d for F. RFI values close to 1 indicate a very good fit. Note: Use the \rfi text macro to display the relative fit index value in the output path diagram. IFI Bollen’s (1989b) incremental fit index (IFI) is given by: IFI = Δ 2 = Cˆ b − Cˆ Cˆ b − d ˆ and d are the discrepancy and the degrees of freedom for the model being where C ˆ b and d b are the discrepancy and the degrees of freedom for the evaluated, and C baseline model. IFI values close to 1 indicate a very good fit. Note: Use the \ifi text macro to display the incremental fit index value in the output path diagram. TLI The Tucker-Lewis coefficient (ρ 2 in the notation of Bollen, 1989b) was discussed by Bentler and Bonett (1980) in the context of analysis of moment structures and is also known as the Bentler-Bonett non-normed fit index (NNFI). TLI = ρ 2 = Cˆ b db Cˆ b db ˆ − Cd −1 The typical range for TLI lies between 0 and 1, but it is not limited to that range. TLI values close to 1 indicate a very good fit. Note: Use the \tli text macro to display the value of the Tucker-Lewis index in the output path diagram. 612 Appendix C CFI The comparative fit index (CFI; Bentler, 1990) is given by CFI = 1 − ( ) NCP max Cˆ − d , 0 =1− ˆ NCP b max Cb − d b , 0 ( ) ˆ , d, and NCP are the discrepancy, the degrees of freedom, and the where C ˆ b , d b, and noncentrality parameter estimate for the model being evaluated, and C NCP b are the discrepancy, the degrees of freedom, and the noncentrality parameter estimate for the baseline model. The CFI is identical to McDonald and Marsh’s (1990) relative noncentrality index (RNI) RNI = 1 − Cˆ − d Cˆ − d b b except that the CFI is truncated to fall in the range from 0 to 1. CFI values close to 1 indicate a very good fit. Note: Use the \cfi text macro to display the value of the comparative fit index in the output path diagram. Parsimony Adjusted Measures James, et al. (1982) suggested multiplying the NFI by a parsimony index so as to take into account the number of degrees of freedom for testing both the model being evaluated and the baseline model. Mulaik, et al. (1989) suggested applying the same adjustment to the GFI. Amos also applies a parsimony adjustment to the CFI. See also “PGFI” on p. 615. 613 Measures of Fit PNFI The PNFI is the result of applying James, et al.’s (1982) parsimony adjustment to the NFI PNFI = (NFI)(PRATIO) = NFI d db where d is the degrees of freedom for the model being evaluated, and d b is the degrees of freedom for the baseline model. Note: Use the \pnfi text macro to display the value of the parsimonious normed fit index in the output path diagram. PCFI The PCFI is the result of applying James, et al.’s (1982) parsimony adjustment to the CFI: PCFI = (CFI )(PRATIO ) = CFI d db where d is the degrees of freedom for the model being evaluated, and d b is the degrees of freedom for the baseline model. Note: Use the \pcfi text macro to display the value of the parsimonious comparative fit index in the output path diagram. GFI and Related Measures The GFI and related fit measures are described here. GFI The GFI (goodness-of-fit index) was devised by Jöreskog and Sörbom (1984) for ML and ULS estimation, and generalized to other estimation criteria by Tanaka and Huba (1985). 614 Appendix C The GFI is given by GFI = 1 − Fˆ Fˆ b where Fˆ is the minimum value of the discrepancy function defined in Appendix B and (g) Fˆb is obtained by evaluating F with Σ = 0 , g = 1, 2,...,G. An exception has to be made for maximum likelihood estimation, since (D2) in Appendix B is not defined for (g) Σ = 0. For the purpose of computing GFI in the case of maximum likelihood (g) (g) estimation, f ( Σ ; S ) in Appendix B is calculated as ( ) f Σ (g ); S (g ) = 12 tr ⎡K (g ) ⎢⎣ −1 (S( ) − Σ( ) )⎤⎥⎦ g g 2 (g) (g) with K = Σ ( γˆ ML ) , where γˆ ML is the maximum likelihood estimate of γ . GFI is always less than or equal to 1. GFI = 1 indicates a perfect fit. Note: Use the \gfi text macro to display the value of the goodness-of-fit index in the output path diagram. AGFI The AGFI (adjusted goodness-of-fit index) takes into account the degrees of freedom available for testing the model. It is given by AGFI = 1 − (1 − GFI) db d where G db = ∑ p*(g ) g =1 The AGFI is bounded above by 1, which indicates a perfect fit. It is not, however, bounded below by 0, as the GFI is. Note: Use the \agfi text macro to display the value of the adjusted GFI in the output path diagram. 615 Measures of Fit PGFI The PGFI (parsimony goodness-of-fit index), suggested by Mulaik, et al. (1989), is a modification of the GFI that takes into account the degrees of freedom available for testing the model PGFI = GFI d db where d is the degrees of freedom for the model being evaluated, and G db = ∑ p*(g ) g =1 is the degrees of freedom for the baseline zero model. Note: Use the \pgfi text macro to display the value of the parsimonious GFI in the output path diagram. Miscellaneous Measures Miscellaneous fit measures are described here. HI 90 Amos reports a 90% confidence interval for the population value of several statistics. The upper and lower boundaries are given in columns labeled HI 90 and LO 90. HOELTER Hoelter’s (1983) critical N is the largest sample size for which one would accept the hypothesis that a model is correct. Hoelter does not specify a significance level to be used in determining the critical N, although he uses 0.05 in his examples. Amos reports a critical N for significance levels of 0.05 and 0.01. 616 Appendix C Here are the critical N’s displayed by Amos for each of the models in Example 6: Model HOELTER 0.05 HOELTER 0.01 Model A: No Autocorrelation Model B: Most General Model C: Time-Invariance Model D: A and C Combined Independence model 164 1615 1925 216 11 219 2201 2494 277 14 Model A, for instance, would have been accepted at the 0.05 level if the sample moments had been exactly as they were found to be in the Wheaton study but with a sample size of 164. With a sample size of 165, Model A would have been rejected. Hoelter argues that a critical N of 200 or better indicates a satisfactory fit. In an analysis of multiple groups, he suggests a threshold of 200 times the number of groups. Presumably this threshold is to be used in conjunction with a significance level of 0.05. This standard eliminates Model A and the independence model in Example 6. Model B is satisfactory according to the Hoelter criterion. I am not myself convinced by Hoelter’s arguments in favor of the 200 standard. Unfortunately, the use of critical N as a practical aid to model selection requires some such standard. Bollen and Liang (1988) report some studies of the critical N statistic. Note: Use the \hfive text macro to display Hoelter’s critical N in the output path diagram for α = 0.05 , or the \hone text macro for α = 0.01 . LO 90 Amos reports a 90% confidence interval for the population value of several statistics. The upper and lower boundaries are given in columns labeled HI 90 and LO 90. RMR The RMR (root mean square residual) is the square root of the average squared amount by which the sample variances and covariances differ from their estimates obtained under the assumption that your model is correct. ⎧ pg ⎪ RMR = ⎨ g =1 ⎪ ⎩ i =1 j ≤i ⎫ ⎪ G j =1 ⎭ g =1 ∑ ∑∑ (sˆij( g ) − σ ij( g ) )⎬⎪ ∑ p *(g ) G 617 Measures of Fit The smaller the RMR is, the better. An RMR of 0 indicates a perfect fit. The following output from Example 6 shows that, according to the RMR, Model A is the best among the models considered except for the saturated model: Model RMR GFI AGFI PGFI Model A: No Autocorrelation Model B: Most General Model C: Time-Invariance Model D: A and C Combined Saturated model Independence model 0.284 0.757 0.749 0.263 0.000 12.342 0.975 0.998 0.997 0.975 1.000 0.494 0.913 0.990 0.993 0.941 0.279 0.238 0.380 0.418 0.292 0.353 Note: Use the \rmr text macro to display the value of the root mean square residual in the output path diagram. Selected List of Fit Measures If you want to focus on a few fit measures, you might consider the implicit recommendation of Browne and Mels (1992), who elect to report only the following fit measures: “CMIN” on p. 599 “P” on p. 599 “FMIN” on p. 602 “F0” on p. 603, with 90% confidence interval “PCLOSE” on p. 605 “RMSEA” on p. 603, with 90% confidence interval “ECVI” on p. 607, with 90% confidence interval (See also “AIC” on p. 605) For the case of maximum likelihood estimation, Browne and Cudeck (1989, 1993) suggest substituting MECVI (p. 608) for ECVI. Appendix D Numeric Diagnosis of Non-Identifiability In order to decide whether a parameter is identified or an entire model is identified, Amos examines the rank of the matrix of approximate second derivatives and of some related matrices. The method used is similar to that of McDonald and Krane (1977). There are objections to this approach in principle (Bentler and Weeks, 1980; McDonald, 1982). There are also practical problems in determining the rank of a matrix in borderline cases. Because of these difficulties, you should judge the identifiability of a model on a priori grounds if you can. With complex models, this may be impossible, so you will have to rely on the numeric determination of Amos. Fortunately, Amos is pretty good at assessing identifiability in practice. 619 Appendix E Using Fit Measures to Rank Models In general, it is hard to pick a fit measure because there are so many from which to choose. The choice gets easier when the purpose of the fit measure is to compare models to each other rather than to judge the merit of models by an absolute standard. For example, it turns out that it does not matter whether you use RMSEA, RFI, or TLI when rank ordering a collection of models. Each of those three measures depends on ˆ ⁄ d, and each depends monotonically on C ˆ ⁄ d. Thus, each Cˆ and d only through C measure gives the same rank ordering of models. For this reason, the specification search procedure reports only RMSEA. RMSEA = Cˆ – d ------------- = nd 1 ⎛ Cˆ --- ---- – 1⎞ ⎠ n⎝ d Cˆ ⁄ d RFI = ρ 1 = 1 – -----------------ˆ Cb ⁄ db ˆ ˆ C C ------b – --db d TLI = ρ 2 = ---------------ˆ C ------b – 1 db ˆ and d only through Cˆ – d , and they depend The following fit measures depend on C ˆ – d . The specification search procedure reports only CFI as monotonically on C representative of them all. 621 622 Appendix E ˆ – d, 0 ) NCP = max ( C ˆ –d C F0 = Fˆ 0 = max ⎛ -------------, 0⎞ ⎝ n ⎠ max ( Cˆ – d, 0 ) CFI = 1 – --------------------------------------------------------ˆ max ( C b – d b, Cˆ – d, 0 ) ˆ –d C RNI = 1 – ----------------- (not reported by Amos) ˆ Cb – db ˆ and not at all on d. The The following fit measures depend monotonically on C ˆ as representative of them all. specification search procedure reports only C CMIN = Cˆ Cˆ FMIN = ---n ˆ C NFI = 1 – -----Cˆ b ˆ and d and can produce a Each of the following fit measures is a weighted sum of C distinct rank order of models. The specification search procedure reports each of them except for CAIC. BCC AIC BIC CAIC 623 Using Fit Measures to Rank Models Each of the following fit measures is capable of providing a unique rank order of models. The rank order depends on the choice of baseline model as well. The specification search procedure does not report these measures. IFI = Δ 2 PNFI PCFI The following fit measures are the only ones reported by Amos that are not functions ˆ and d in the case of maximum likelihood estimation. The specification search of C procedure does not report these measures. GFI AGFI PGFI Appendix F Baseline Models for Descriptive Fit Measures Seven measures of fit (NFI, RFI, IFI, TLI, CFI, PNFI, and PCFI) require a null or baseline bad model against which other models can be compared. The specification search procedure offers a choice of four null, or baseline, models: Null 1: The observed variables are required to be uncorrelated. Their means and variances are unconstrained. This is the baseline Independence model in an ordinary Amos analysis when you do not perform a specification search. Null 2: The correlations among the observed variables are required to be equal. The means and variances of the observed variables are unconstrained. Null 3: The observed variables are required to be uncorrelated and to have means of 0. Their variances are unconstrained. This is the baseline Independence model used by Amos 4.0.1 and earlier for models where means and intercepts are explicit model parameters. Null 4: The correlations among the observed variables are required to be equal. The variances of the observed variables are unconstrained. Their means are required to be 0. Each null model gives rise to a different value for NFI, RFI, IFI, TLI, CFI, PNFI, and PCFI. Models Null 3 and Null 4 are fitted during a specification search only when means and intercepts are explicitly estimated in the models you specify. The Null 3 and Null 4 models may be appropriate when evaluating models in which means and intercepts are constrained. There is little reason to fit the Null 3 and Null 4 models in the common situation where means and intercepts are not constrained but are estimated for the sole purpose of allowing maximum likelihood estimation with missing data. 625 626 Appendix F To specify which baseline models you want to be fitted during specification searches: E From the menus, choose Analyze > Specification Search. E Click the Options button on the Specification Search toolbar. E In the Options dialog box, click the Next search tab. The four null models and the saturated model are listed in the Benchmark models group. Appendix G Rescaling of AIC, BCC, and BIC The fit measures, AIC, BCC, and BIC, are defined in Appendix C. Each measure is of ˆ + kq , where k takes on the same value for all models. Small values are the form C ˆ ) and parsimony good, reflecting a combination of good fit to the data (small C (small q). The measures are used for comparing models to each other and not for judging the merit of a single model. The specification search procedure in Amos provides three ways of rescaling these measures, which were illustrated in Examples 22 and 23. This appendix provides formulas for the rescaled fit measures. (i) (i) (i) In what follows, let AIC , BCC , and BIC be the fit values for model i. Zero-Based Rescaling Because AIC, BCC, and BIC are used only for comparing models to each other, with smaller values being better than larger values, there is no harm in adding a constant, as in: (i) (i) (i) AIC 0 = AIC – min[ AIC ] i (i) (i) (i) BCC 0 = BCC – min[ BCC ] i (i) (i) (i) BIC 0 = BIC – min [ BIC ] i 627 628 Appendix G The rescaled values are either 0 or positive. For example, the best model according to AIC has AIC 0 = 0 , while inferior models have positive AIC 0 values that reflect how much worse they are than the best model. E To display AIC 0 , BCC 0 , and BIC 0 after a specification search, click on the Specification Search toolbar. E On the Current results tab of the Options dialog box, click Zero-based (min = 0). Akaike Weights and Bayes Factors (Sum = 1) E To obtain the following rescaling, select Akaike weights and Bayes factors (sum = 1) on the Current results tab of the Options dialog box. (i) AIC p (i) e –AIC ⁄ 2 = ---------------------------- ∑e – AIC (m) ⁄ 2 m (i) (i) e –BCC ⁄ 2 BCC p = ----------------------------- ∑e – BCC (m) ⁄ 2 m (i) (i) e –BIC ⁄ 2 BIC p = --------------------------- ∑e – BIC (m) ⁄ 2 m Each of these rescaled measures sums to 1 across models. The rescaling is performed only after an exhaustive specification search. If a heuristic search is carried out or if a positive value is specified for Retain only the best ___ models, then the summation in (i) the denominator cannot be calculated, and rescaling is not performed. The AIC p are (i) called Akaike weights by Burnham and Anderson (1998). BCC p has the same (i) interpretation as AIC p . Within the Bayesian framework and under suitable (i) assumptions with equal prior probabilities for the models, the BIC p are approximate posterior probabilities (Raftery, 1993, 1995). 629 Rescaling of AIC, BCC, and BI C Akaike Weights and Bayes Factors (Max = 1) E To obtain the following rescaling, select Akaike weights and Bayes factors (max = 1) on the Current results tab of the Options dialog box. (i) (i) e –AIC ⁄ 2 AIC L = ----------------------------------------(m) max [ e –AIC ⁄ 2 ] m (i) (i) e –BCC ⁄ 2 BCC L = -----------------------------------------(m) max [ e –BCC ⁄ 2 ] m (i) BIC L (i) e –BIC ⁄ 2 = ---------------------------------------( m) – BIC ⁄ 2] max [ e m For example, the best model according to AIC has AIC L = 1, while inferior models have AIC L between 0 and 1. See Burnham and Anderson (1998) for further discussion of AIC L , and Raftery (1993, 1995) and Madigan and Raftery (1994) for further discussion of BIC L . 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Index additive constant (intercept), 221 ADF, asymptotically distribution-free, 594 admissibility test in Bayesian estimation, 420 AGFI, adjusted goodness-of-fit index, 614 AIC Akaike information criterion, 309, 605 Burnham and Anderson’s guidelines for, 326 Akaike weights, 628, 629 interpreting, 328 viewing, 327 alternative to analysis of covariance, 145, 241 Amos Graphics, launching, 9 AmosEngine methods, 57 analysis of covariance, 147 alternative to, 145, 241 comparison of methods, 256 Anderson iris data, 521, 539 assumptions by Amos about analysis of covariance, 241 about correlations among exogenous variables, 77 about distribution, 35 about missing data, 270 about parameters in the measurement model, 245 about regression, 221 asymptotic, 30 autocorrelation plot, 402, 505 backwards heuristic specification search, 358 baseline model, 625 comparisons to, 608 specifying, 626 Bayes factors, 628, 629 rescaling of, 331 Bayes’ Theorem, 385 Bayesian estimation, 385 of additional estimands, 428 Bayesian imputation, 462 BCC Browne-Cudeck criterion, 309, 606 Burnham and Anderson’s guidelines for, 326 comparing models using, 326 best-fit graph for C, 338 for fit measures, 339 point of diminishing returns, 339 BIC Bayes information criterion, 606 comparing models using, 347 bootstrap, 295–301 ADF, 314 approach to model comparison, 303–310 compare estimation methods, 311–318 failures, 309 GLS, 314 ML, 314 monitoring progress, 297 number of samples, 297, 307 samples, 303 shortcomings, 296 table of diagnostic information, 299 ULS, 314 boundaries. See category boundaries burn-in samples, 395 CAIC, consistent AIC, 607 calculate critical ratios, 110 standardized estimates, 33 Caption pd method for drawing path diagrams, 583 647 648 Index category boundaries, 495 censored data, 475 CFI, comparative fit index, 612 change default behavior, 243 defaults, 243 fonts, 27 orientation of drawing area, 86 chi-square probability method, 281 chi-square statistic, 53 display in figure caption, 53 classification errors, 536 CMIN minimum discrepancy function C, 120, 599 table, 368 CMIN/DF, minimum discrepancy function divided by degrees of freedom, 601 combining results of multiply imputed data files, 471 common factor analysis model, 139 common factor model, 138 common factors, 139 comparing models using Bayes factors, 329 using BCC, 326 using BIC, 328, 347 complex model, 598 conditional test, 260 conditions for identifiability, 140 confidence limits, 615, 616 consistent AIC (CAIC), 309 constrain covariances, 44 means and intercepts, 378 parameters, 14 variances, 42 constraints add to improve model, 110 conventional linear regression, 67 conventions for specifying group differences, 161 convergence in Bayesian estimation, 396 in distribution, 396 of posterior summaries, 397 copy path diagram, 21 text output, 21 correlation estimates as text output, 34 correlations among exogenous variables, 77 Cov pd method for drawing path diagrams, 582 covariances draw, 190 label, 191 structural, 365 unbiased estimates, 242 create a second group, 191 path diagram, 87 credible interval, 386 credible regions, 406 critical ratio, 30 calculate, 110 cross-group constraints, 232 generating, 379 parameters affected by, 366 setting manually, 369 custom estimands, 437 data and model specification methods, 57 data files, 11 data imputation, 270, 461, 484, 516 data input, 46 data recoding, 477, 492, 512 declarative methods, 57 defaults, changing, 243 degrees of freedom, 32 descriptive fit measures, 625 DF, degrees of freedom, 598 diagnostics MCMC, 504 direct effect, 122 discrepancy functions, 593 distribution assumptions for Amos models, 35 drag properties option, 189 649 Index draw covariances, 190 drawing area add covariance paths, 90 add unobserved variable, 90 change orientation of, 86 viewing measurement weights, 366 duplicate measurement model, 88 ECVI, expected cross-validation index, 607 endogenous variables, 69, 76 EQS (SEM program), 243 equality constraints, 140 equation format for AStructure method, 78 establishing covariances, 27 estimate means and intercepts option when not selected, 212 when selected, 212 estimating indirect effects, 425 means, 209 variances and covariances, 23 European Values Study Group, 489 exhaustive specification search, 358 exogenous variables, 38, 69, 76, 78 exploratory analysis, 101 exploratory factor analysis, 344, 349 F0, population discrepancy function, 603 factor analysis, 137 exploratory, 349 model, 229 with structured means, 229 factor loadings, 139, 365 factor means comparing, 370 removing constraints, 371 factor score weights, 122 Fisher iris data, 521, 539 fit measures, 597, 617, 621 fitting all models, 368 in a single analysis, 188 fixed variables, 35 FMIN, minimum value of discrepancy F, 602 forward heuristic specification search, 358 free parameters, 38 generated models, 367 generating cross-group constraints, 379 GetCheckBox pd method, 588 GFI, goodness-of-fit index, 613 GLS, generalized least squares, 594 graph best-fit, 338 scatterplot of fit and complexity, 333 scree plot, 340 GroupName method, 172 heuristic specification search, 349, 358 backwards, 358 forward, 358 limitations of, 361 stepwise, 358, 359 HOELTER, critical N, 615 homogeneity of variances and covariances, 546 hypothesis testing, 52 identifiability, 67, 139, 619 conditions for, 140 identification constraints, 148 IFI, incremental fit index, 611 improper solutions, 410 imputation Bayesian, 462 data, 461, 484, 516 model-based, 462 multiple, 462 regression, 461 stochastic regression, 461 independence model, 272, 275, 306, 597 650 Index indirect effects, 122 estimating, 425 finding a confidence interval for, 431 viewing standardized, 427 inequality constraints on data, 481, 488 information-theoretic measures of fit, 605 iris data, 521, 539 journals about structural equation modeling, 5 just-identified model, 73 label output, 51 variances and covariances, 191 label switching, 554, 576 latent structure analysis, 537, 553 latent variable posterior predictive distribution, 511 linear dependencies, 69 LISREL (SEM program), 243 listwise deletion, 269 Mainsub function, 579 MCMC diagnostics, 504 means and intercept modeling, 209 means and intercepts constraining, 370, 378 measurement error, 69 measurement model, 83, 304 measurement residuals, 366 measurement weights, 365 viewing in the drawing area, 366 measures of fit, 597 MECVI, modified expected cross-validation index, 608 methods for retrieving results, 57 minimum discrepancy function C, 120 missing data, 269–293 misuse of modification indices, 110 mixture modeling, 521 ML, maximum likelihood estimation, 593 model common factor, 138 common factor analysis, 139 complex, 598 draw, 140 drawing arrows in, 13 drawing variables in, 11 factor analysis, 229 generated, 367 identification, 67, 70, 85, 103, 131, 139, 148, 230 improve by adding new constraints, 110 independence, 272, 275, 306, 597 just-identified, 73 measurement, 83, 304 modification, 104 naming variables in, 12 nested, 260 new, 10 nonrecursive, 76, 129, 131 recursive, 76 regression, 9 rejection of, 104 saturated, 73, 272, 275, 306, 597 simple, 598 simultaneous equations, 175 specification, 38 specify, 11 stable, 135 structural, 84 test one against another, 96 unstable, 135 without means and intercepts, 363 zero, 597 model specification, non-graphical, 577 model-based imputation, 462 models individual, view graphics for, 119 multiple in a single analysis, 116 multiple, view statistics for, 119 modification indices, 105, 110, 382 misuse of, 110 request, 149 651 Index move objects, 15 multiple imputation, 462 multiple models in a single analysis, 116 multiple-group analysis, 377 multiple-group factor analysis, 363 multiply imputed data file, combining results, 471 multiply imputed datasets, 469 multivariate analysis of variance, 216 naming groups, 196 variables, 26 NCP, noncentrality parameter, 602 negative variances, 153 nested models, 260 new group, 56, 77, 172 NFI, normed fit index, 609 NNFI, non-normed fit index, 611 non-diffuse prior distribution, 409 non-graphical model specification, 577 non-identifiability, 619 nonrecursive model, 76, 129, 131 normal distribution, 35 NPAR, number of parameters, 598 null model, 625 numeric custom estimands, 443 Observed pd method for drawing path diagrams, 580 obtain critical rations for parameter differences, 182 squared multiple correlations, 133 standardized estimates, 133, 142 Occam’s window, symmetric, 331 optional output, 16, 33, 48, 121 ordered-categorical data, 489 P, probability, 599 pairwise deletion, 270 parameter constraints, 41 parameter estimation structure specification, 78 parameters affected by cross-group constraints, 366 equal, benefits of specifying, 44 specifying equal, 43 parsimony, 598 parsimony index, 612 Path pd method for drawing path diagrams, 582 path diagram, 3 alter the appearance, 15 attach data file, 24, 46 constrain parameters, 14 copy, 21 create, 87 delete an object, 15 display chi-square statistics, 53 draw arrows, 13 duplicate measurement model, 88 format objects, 45 move objects, 15, 45 new, 24 print, 20 redo an action, 16 reshape an object, 15 rotate indicators, 88 specify group name in caption, 176 undo an action, 16 PCFI, parsimonious comparative fit index, 613 PCLOSE, for close fit of the population RMSEA, 605 pd methods Caption, 583 Cov, 582 GetCheckBox, 588 Observed, 580 Path, 582 Reposition, 582 SetDataFile, 588 UndoResume, 583 UndoToHere, 583 Unobserved, 581 652 Index PGFI, parsimony goodness-of-fit index, 615 Plot window display best-fit graphs, 339 scree plot, 340 PNFI, parsimonious normed fit index, 613 point of diminishing returns, 332, 339, 342 population discrepancy measure of model adequacy, 602 posterior distribution, 385 mean, 386 standard deviation, 386 posterior predictive distribution, 481, 506, 535, 551, 572 for a latent variable, 511 PRATIO, parsimony ratio, 599 predictive distribution. See posterior predictive distribution predictor variables, 36 prior distribution, 385, 387, 409 of group proportions, 575 probability, 30 random number seed, 392 random variables, 35 recoding data, 477, 492, 512 recursive model, 76 regression imputation, 461 regression model, 9, 14, 478 regression weights fix, 70 making optional, 351 unidentified, 73 Reposition pd method for drawing path diagrams, 582 request modification indices, 149 rescaled measures, 627 reshape an object, 15 RFI, relative fit index, 610 RMR, root mean square residual, 616 RMSEA, root mean square error of approximation, 603 RNI, relative noncentrality index, 612 rotate indicators, 88 saturated model, 73, 272, 275, 306, 597 scatterplot adjusting line of constant fit, 335 adjusting line representing C - df, 337 line representing C - df, 336 line representing constant fit, 335 of fit and complexity, 333 other lines representing constant fit, 338 scree plot, 342 for C, 340 seed, random number, 392 Semnet, 5 SetDataFile pd method, 588 simple model, 598 simultaneous analysis of several groups, 159 simultaneous equations model, 175 simultaneous factor analysis, 195 SLS, scale-free least squares, 595 space vertically, 190 specification search, 319–348 Akaike weights, 327 CAIC, 622 CFI, 621 comparing models using Bayes factor, 329 comparing models using BCC, 326 comparing models using BIC, 328 confirmatory, 320 exploratory factor analysis, 344, 349 generated models, 324 heuristic, 349, 358 increasing speed of, 323 limiting models retained, 322 number of parameters to use, 332 optional arrows, 345 parameter estimates, 325 performing, 323 point of diminishing returns, 332 program options, 322 required arrows, 321 resetting defaults, 322, 345 653 Index RMSEA, 621 viewing fit measures, 323 with few optional arrows, 320 specify benefits of equal parameters, 44 equal paramaters, 43 group name in figure caption, 176 specifying group differences conventions, 161 squared multiple correlation, 144 stability index, 135 stability test in Bayesian estimation, 420 stable model, 135 standardized estimates, 33, 132 obtain, 142 view, 143 statistical hypothesis testing, 104 stochastic regression imputation, 461 structural covariances, 365 structural equation modeling, 2 journals, 5 methods for estimating, 2 structural model, 84 structure specification, 57, 78, 79 parameter estimation, 78 survival time, 476 symettric Occam’s window, 331 test for uncorreletated variables, 60 testing hypotheses about means, 209 text file with results, 56 text macros, 52, 598–617 text output copy, 21 thinning, 414 thresholds. See category boundaries time-series plot, 401 TLI, Tucker-Lewis index, 611 total effect, 123 trace plot, 401, 504, 554 training data, 521 ULS, unweighted least squares, 595 unbiased estimates of variance and covariances, 242 uncorrelated variables, 60 UndoResume pd method, 583 UndoToHere pd method, 583 unidentified regression weights, 73 unique factor, 139 unique variables, 78 Unobserved pd method for drawing path diagrams, 581 unobserved variables, 81 unstable model, 135 using BCC to compare models, 354 variables endogenous, 69, 76 entering names, 90 exogenous, 69, 76, 78 unique, 78 unobserved, 81 variances label, 191 unbiased estimates, 242 view generated models, 367 graphics output, 19, 28 parameter subsets, 366 standardized estimates, 143 standardized indirect effects, 427 text output, 18, 29 zero model, 597 zero-based rescaling, 627
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