The_SeqHound_Admin_Manual The Seq Hound Admin Manual
User Manual:
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Page Count: 421 [warning: Documents this large are best viewed by clicking the View PDF Link!]
- About this manual.
- Conventions
- How to contact us.
- Who is SeqHound?
- 4. Setting up SeqHound locally.
- 5. Description of the SeqHound parsers and data tables by module
- What are modules?
- How to use this section.
- Parser descriptions
- Table descriptions
- An overview of the SeqHound data table structure
- Parsers and resource files needed to build and update modules of SeqHound.
- core module
- Redundant protein sequences (redundb) module
- Complete genomes tracking (gendb) module
- Taxonomy hierarchy (taxdb) module
- Structural databases (strucdb) module
- Protein sequence neighbours (neighdb) module
- Locus link functional annotations (lldb) module
- GENE module
- Gene Ontology hierarchy (godb) module
- Gene Ontology Association (GOA) module
- dbxref module
- How to update the DBXref and GO Annotation modules using a cluster.
- Understanding the dbxref.ini file
- RPS-BLAST domains (rpsdb) module
- Molecular Interaction (MI) module
- Text mining module
- 6. Developing for SeqHound.
- 7. Appendices